Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:30:49 (995341): wrapper (7.7.26015): starting
20:30:49 (995341): wrapper: running run_atlas (--nthreads 4)
[2026-02-06 20:30:49] Arguments: --nthreads 4
[2026-02-06 20:30:49] Threads: 4
[2026-02-06 20:30:49] Checking for CVMFS
[2026-02-06 20:30:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 20:30:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 20:30:49] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 20:30:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 20:30:50] 2.13.1.0 667405 843 61660 155958 2 188 5576837 10240001 1778 130560 0 880672 99.991 35809 374 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-06 20:30:50] CVMFS is ok
[2026-02-06 20:30:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 20:30:50] Checking for apptainer binary...
[2026-02-06 20:30:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 20:30:50] Running /usr/bin/apptainer --version
[2026-02-06 20:30:50] apptainer version 1.4.5
[2026-02-06 20:30:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 20:30:50] atlas6l2
[2026-02-06 20:30:50] apptainer works
[2026-02-06 20:30:50] Set ATHENA_PROC_NUMBER=4
[2026-02-06 20:30:50] Set ATHENA_CORE_NUMBER=4
[2026-02-06 20:30:50] Starting ATLAS job with PandaID=6996533797
[2026-02-06 20:30:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 21:58:12]  *** The last 200 lines of the pilot log: ***
[2026-02-06 21:58:12]  replicas=None
[2026-02-06 21:58:12]  scope=mc23_13p6TeV
[2026-02-06 21:58:12]  status=None
[2026-02-06 21:58:12]  status_code=0
[2026-02-06 21:58:12]  storage_token=
[2026-02-06 21:58:12]  surl=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6996533797/log.48442098._003931.job.log.tgz.1
[2026-02-06 21:58:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/10/log.48442098._003931.job.log.tgz.1
[2026-02-06 21:58:12]  workdir=None
[2026-02-06 21:58:12] ]
[2026-02-06 21:58:12] 2026-02-06 20:57:31,344 | INFO     | transferring file log.48442098._003931.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6996533797/log.48442098._003931.job.log.tgz.1 to /var/li
[2026-02-06 21:58:12] 2026-02-06 20:57:31,345 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6996533797/log.48442098._003931.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-02-06 21:58:12] 2026-02-06 20:57:31,355 | INFO     | adding to output.list: log.48442098._003931.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/10/log.48442098._003931.job.log.tg
[2026-02-06 21:58:12] 2026-02-06 20:57:31,356 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-06 21:58:12] 2026-02-06 20:57:31,356 | INFO     | summary of transferred files:
[2026-02-06 21:58:12] 2026-02-06 20:57:31,356 | INFO     |  -- lfn=log.48442098._003931.job.log.tgz.1, status_code=0, status=transferred
[2026-02-06 21:58:12] 2026-02-06 20:57:31,356 | INFO     | stage-out finished correctly
[2026-02-06 21:58:12] 2026-02-06 20:57:31,936 | INFO     | time since job start (5192s) is within the limit (349056.0s)
[2026-02-06 21:58:12] 2026-02-06 20:57:33,252 | WARNING  | process 1003642 can no longer be monitored (due to stat problems) - aborting
[2026-02-06 21:58:12] 2026-02-06 20:57:33,253 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6996533797/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 21:58:12] 2026-02-06 20:57:33,338 | INFO     | number of running child processes to parent process 1003642: 1
[2026-02-06 21:58:12] 2026-02-06 20:57:33,338 | INFO     | maximum number of monitored processes: 6
[2026-02-06 21:58:12] 2026-02-06 20:57:33,353 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-06 21:58:12] 2026-02-06 20:57:33,942 | INFO     | time since job start (5194s) is within the limit (349056.0s)
[2026-02-06 21:58:12] 2026-02-06 20:57:35,841 | INFO     | monitor loop #398: job 0:6996533797 is in state 'finished'
[2026-02-06 21:58:12] 2026-02-06 20:57:35,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-06 21:58:12] 2026-02-06 20:57:35,948 | INFO     | time since job start (5196s) is within the limit (349056.0s)
[2026-02-06 21:58:12] 2026-02-06 20:57:35,948 | INFO     | 5200s have passed since pilot start - server update state is 'RUNNING'
[2026-02-06 21:58:12] 2026-02-06 20:57:36,131 | INFO     | job 6996533797 has state=finished
[2026-02-06 21:58:12] 2026-02-06 20:57:36,131 | INFO     | preparing for final server update for job 6996533797 in state='finished'
[2026-02-06 21:58:12] 2026-02-06 20:57:36,131 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6996533797/jobReport.json
[2026-02-06 21:58:12] 2026-02-06 20:57:36,132 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/1/workernode_map.json
[2026-02-06 21:58:12] 2026-02-06 20:57:36,132 | INFO     | this job has now completed (state=finished)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,132 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,132 | INFO     | log transfer has been attempted: DONE
[2026-02-06 21:58:12] 2026-02-06 20:57:36,132 | INFO     | job 6996533797 has finished - writing final server update
[2026-02-06 21:58:12] 2026-02-06 20:57:36,132 | INFO     | total number of processed events: 400 (read)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,134 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6996533797/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,134 | INFO     | extracted standard info from prmon json
[2026-02-06 21:58:12] 2026-02-06 20:57:36,134 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 21:58:12] 2026-02-06 20:57:36,134 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 21:58:12] 2026-02-06 20:57:36,134 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 21:58:12] 2026-02-06 20:57:36,134 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 21:58:12] 2026-02-06 20:57:36,135 | INFO     | fitting pss+swap vs Time
[2026-02-06 21:58:12] 2026-02-06 20:57:36,135 | INFO     | sum of square deviations: 147126479.5
[2026-02-06 21:58:12] 2026-02-06 20:57:36,135 | INFO     | sum of deviations: -5973886983.499999
[2026-02-06 21:58:12] 2026-02-06 20:57:36,135 | INFO     | mean x: 1770408930.5
[2026-02-06 21:58:12] 2026-02-06 20:57:36,135 | INFO     | mean y: 2399552.269230769
[2026-02-06 21:58:12] 2026-02-06 20:57:36,135 | INFO     | intersect: 71887643468.44753
[2026-02-06 21:58:12] 2026-02-06 20:57:36,135 | INFO     | chi2: 0.014584024584571954
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | current memory leak: -40.60 B/s (using 78 data points, chi2=0.01)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | could have reported an average CPU frequency of 2400 MHz (6 samples)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | ..............................
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | . Timing measurements:
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | . get job = 0 s
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | . initial setup = 3 s
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | . payload setup = 4 s
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | . stage-in = 0 s
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | . payload execution = 5173 s
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | . stage-out = 0 s
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | . log creation = 0 s
[2026-02-06 21:58:12] 2026-02-06 20:57:36,136 | INFO     | ..............................
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | 
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | job summary report
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | --------------------------------------------------
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | PanDA job id: 6996533797
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | task id: 48442098
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | errors: (none)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | pilot state: finished 
[2026-02-06 21:58:12] 2026-02-06 20:57:36,406 | INFO     | transexitcode: 0
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | exeerrorcode: 0
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | exeerrordiag: 
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | exitcode: 0
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | exitmsg: OK
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | cpuconsumptiontime: 19665 s
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | nevents: 400
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | neventsw: 0
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | pid: 1003642
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | pgrp: 1003642
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | corecount: 4
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | event service: False
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | sizes: {0: 2282848, 1: 2283138, 11: 2283138, 5181: 2318712, 5183: 2318712, 5186: 2318906}
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | --------------------------------------------------
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | 
[2026-02-06 21:58:12] 2026-02-06 20:57:36,407 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | job 6996533797 has completed (purged errors)
[2026-02-06 21:58:12] 2026-02-06 20:57:36,418 | INFO     | overall cleanup function is called
[2026-02-06 21:58:12] 2026-02-06 20:57:37,425 | INFO     | --- collectZombieJob: --- 10, [1003642]
[2026-02-06 21:58:12] 2026-02-06 20:57:37,425 | INFO     | zombie collector waiting for pid 1003642
[2026-02-06 21:58:12] 2026-02-06 20:57:37,425 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 21:58:12] 2026-02-06 20:57:37,425 | INFO     | collected zombie processes
[2026-02-06 21:58:12] 2026-02-06 20:57:37,425 | INFO     | will attempt to kill all subprocesses of pid=1003642
[2026-02-06 21:58:12] 2026-02-06 20:57:37,509 | INFO     | process IDs to be killed: [1003642] (in reverse order)
[2026-02-06 21:58:12] 2026-02-06 20:57:37,537 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 21:58:12] 2026-02-06 20:57:37,537 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 21:58:12] 2026-02-06 20:57:37,539 | INFO     | did not find any defunct processes belonging to 1003642
[2026-02-06 21:58:12] 2026-02-06 20:57:37,541 | INFO     | did not find any defunct processes belonging to 1003642
[2026-02-06 21:58:12] 2026-02-06 20:57:37,541 | INFO     | ready for new job
[2026-02-06 21:58:12] 2026-02-06 20:57:37,541 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 21:58:12] 2026-02-06 20:57:37,542 | INFO     | **************************************
[2026-02-06 21:58:12] 2026-02-06 20:57:37,542 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 21:58:12] 2026-02-06 20:57:37,542 | INFO     | **************************************
[2026-02-06 21:58:12] 2026-02-06 20:57:37,543 | INFO     | 
[2026-02-06 21:58:12] 2026-02-06 20:57:37,543 | INFO     | pilot is running in a VM
[2026-02-06 21:58:12] 2026-02-06 20:57:37,543 | INFO     | architecture information:
[2026-02-06 21:58:12] 2026-02-06 20:57:37,543 | INFO     | executing command: cat /etc/os-release
[2026-02-06 21:58:12] 2026-02-06 20:57:37,550 | INFO     | cat /etc/os-release:
[2026-02-06 21:58:12] NAME="CentOS Linux"
[2026-02-06 21:58:12] VERSION="7 (Core)"
[2026-02-06 21:58:12] ID="centos"
[2026-02-06 21:58:12] ID_LIKE="rhel fedora"
[2026-02-06 21:58:12] VERSION_ID="7"
[2026-02-06 21:58:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 21:58:12] ANSI_COLOR="0;31"
[2026-02-06 21:58:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 21:58:12] HOME_URL="https://www.centos.org/"
[2026-02-06 21:58:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 21:58:12] 
[2026-02-06 21:58:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 21:58:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 21:58:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 21:58:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 21:58:12] 
[2026-02-06 21:58:12] 2026-02-06 20:57:37,550 | INFO     | **************************************
[2026-02-06 21:58:12] 2026-02-06 20:57:38,053 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2026-02-06 21:58:12] 2026-02-06 20:57:38,061 | INFO     | sufficient remaining disk space (158188175360 B)
[2026-02-06 21:58:12] 2026-02-06 20:57:38,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 21:58:12] 2026-02-06 20:57:38,061 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 21:58:12] 2026-02-06 20:57:38,061 | INFO     | update_server=False
[2026-02-06 21:58:12] 2026-02-06 20:57:38,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 21:58:12] 2026-02-06 20:57:38,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 21:58:12] 2026-02-06 20:57:38,193 | INFO     | all data control threads have been joined
[2026-02-06 21:58:12] 2026-02-06 20:57:38,345 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-06 21:58:12] 2026-02-06 20:57:38,345 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-06 21:58:12] 2026-02-06 20:57:38,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 21:58:12] 2026-02-06 20:57:38,345 | INFO     | will abort loop
[2026-02-06 21:58:12] 2026-02-06 20:57:38,912 | INFO     | all job control threads have been joined
[2026-02-06 21:58:12] 2026-02-06 20:57:39,067 | INFO     | [job] retrieve thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:39,067 | INFO     | [job] queue monitor thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:39,148 | INFO     | all payload control threads have been joined
[2026-02-06 21:58:12] 2026-02-06 20:57:39,198 | INFO     | [data] control thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:39,253 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:39,346 | INFO     | [job] job monitor thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:39,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 21:58:12] 2026-02-06 20:57:39,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 21:58:12] 2026-02-06 20:57:39,590 | INFO     | [payload] failed_post thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:39,808 | INFO     | [payload] validate_post thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:39,917 | INFO     | [job] control thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:40,153 | INFO     | [payload] control thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:40,186 | INFO     | [job] validate thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:40,287 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:40,453 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:40,510 | INFO     | [data] copytool_in thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:41,411 | INFO     | [data] copytool_out thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:43,411 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:57:48,347 | INFO     | job.realtimelogging is not enabled
[2026-02-06 21:58:12] 2026-02-06 20:57:49,353 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 21:58:12] 2026-02-06 20:58:06,112 | INFO     | [monitor] cgroup control has ended
[2026-02-06 21:58:12] 2026-02-06 20:58:06,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125537461839680)>', '<ExcThread(monitor, started 125536961541888)>']
[2026-02-06 21:58:12] 2026-02-06 20:58:09,158 | INFO     | PID=999150 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-06 21:58:12] 2026-02-06 20:58:09,158 | INFO     | .. there are 3 such processes running
[2026-02-06 21:58:12] 2026-02-06 20:58:09,159 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 21:58:12] 2026-02-06 20:58:09,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 21:58:12] 2026-02-06 20:58:09,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 21:58:12] 2026-02-06 20:58:09,159 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 21:58:12] 2026-02-06 20:58:09,159 | INFO     | [monitor] control thread has ended
[2026-02-06 21:58:12] 2026-02-06 20:58:11,951 | INFO     | all workflow threads have been joined
[2026-02-06 21:58:12] 2026-02-06 20:58:11,952 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 21:58:12] 2026-02-06 20:58:11,952 | INFO     | traces error code: 0
[2026-02-06 21:58:12] 2026-02-06 20:58:11,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 21:58:12] 2026-02-06 20:58:12,031 [wrapper] ==== pilot stdout END ====
[2026-02-06 21:58:12] 2026-02-06 20:58:12,034 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 21:58:12] 2026-02-06 20:58:12,039 [wrapper] pilotpid: 999150
[2026-02-06 21:58:12] 2026-02-06 20:58:12,043 [wrapper] Pilot exit status: 0
[2026-02-06 21:58:12] 2026-02-06 20:58:12,056 [wrapper] pandaids: 6996533797
[2026-02-06 21:58:12] 2026-02-06 20:58:12,082 [wrapper] cleanup supervisor_pilot 1025805 999151
[2026-02-06 21:58:12] 2026-02-06 20:58:12,084 [wrapper] Test setup, not cleaning
[2026-02-06 21:58:12] 2026-02-06 20:58:12,089 [wrapper] apfmon messages muted
[2026-02-06 21:58:12] 2026-02-06 20:58:12,092 [wrapper] ==== wrapper stdout END ====
[2026-02-06 21:58:12] 2026-02-06 20:58:12,096 [wrapper] ==== wrapper stderr END ====
[2026-02-06 21:58:12]  *** Error codes and diagnostics ***
[2026-02-06 21:58:12]     "exeErrorCode": 0,
[2026-02-06 21:58:12]     "exeErrorDiag": "",
[2026-02-06 21:58:12]     "pilotErrorCode": 0,
[2026-02-06 21:58:12]     "pilotErrorDiag": "",
[2026-02-06 21:58:12]  *** Listing of results directory ***
[2026-02-06 21:58:12] insgesamt 673228
[2026-02-06 21:58:12] -rwx------ 1 yeti boinc     36322 Feb  6 10:17 runpilot2-wrapper.sh
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc      5111 Feb  6 10:21 queuedata.json
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc    584627 Feb  6 10:21 pilot3.tar.gz
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc       100 Feb  6 20:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 21:58:12] -rwxr-xr-x 1 yeti boinc      7986 Feb  6 20:30 run_atlas
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc       105 Feb  6 20:30 job.xml
[2026-02-06 21:58:12] -rw-r--r-- 2 yeti boinc     15845 Feb  6 20:30 start_atlas.sh
[2026-02-06 21:58:12] drwxrwx--x 2 yeti boinc      4096 Feb  6 20:30 shared
[2026-02-06 21:58:12] -rw-r--r-- 2 yeti boinc    597962 Feb  6 20:30 input.tar.gz
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc      6620 Feb  6 20:30 init_data.xml
[2026-02-06 21:58:12] -rw-r--r-- 2 yeti boinc 502828793 Feb  6 20:30 EVNT.48442096._000079.pool.root.1
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc         0 Feb  6 20:30 boinc_setup_complete
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc         0 Feb  6 20:30 boinc_lockfile
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc      2530 Feb  6 20:30 pandaJob.out
[2026-02-06 21:58:12] -rw------- 1 yeti boinc        52 Feb  6 20:30 setup.sh.local
[2026-02-06 21:58:12] -rw------- 1 yeti boinc   1009512 Feb  6 20:30 agis_schedconf.cvmfs.json
[2026-02-06 21:58:12] -rw------- 1 yeti boinc   1513088 Feb  6 20:30 agis_ddmendpoints.agis.ALL.json
[2026-02-06 21:58:12] -rw------- 1 yeti boinc       419 Feb  6 20:30 workernode_map.json
[2026-02-06 21:58:12] drwx------ 5 yeti boinc      4096 Feb  6 20:30 pilot3
[2026-02-06 21:58:12] -rw------- 1 yeti boinc 180457355 Feb  6 21:57 HITS.48442098._003931.pool.root.1
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc       530 Feb  6 21:57 boinc_task_state.xml
[2026-02-06 21:58:12] -rw------- 1 yeti boinc      1021 Feb  6 21:57 memory_monitor_summary.json
[2026-02-06 21:58:12] -rw------- 1 yeti boinc    295555 Feb  6 21:57 log.48442098._003931.job.log.tgz.1
[2026-02-06 21:58:12] -rw------- 1 yeti boinc        95 Feb  6 21:57 pilot_heartbeat.json
[2026-02-06 21:58:12] -rw------- 1 yeti boinc      6311 Feb  6 21:57 heartbeat.json
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc        27 Feb  6 21:58 wrapper_checkpoint.txt
[2026-02-06 21:58:12] -rw------- 1 yeti boinc      5153 Feb  6 21:58 pilotlog.txt
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc      8192 Feb  6 21:58 boinc_mmap_file
[2026-02-06 21:58:12] -rw------- 1 yeti boinc    781022 Feb  6 21:58 log.48442098._003931.job.log.1
[2026-02-06 21:58:12] -rw------- 1 yeti boinc       357 Feb  6 21:58 output.list
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc       620 Feb  6 21:58 runtime_log
[2026-02-06 21:58:12] -rw------- 1 yeti boinc   1095680 Feb  6 21:58 result.tar.gz
[2026-02-06 21:58:12] -rw------- 1 yeti boinc       637 Feb  6 21:58 uWcNDmu8W88n9Rq4apOajLDm4fhM0noT9bVooX4SDmmOYKDmyN67qm.diag
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc      9544 Feb  6 21:58 runtime_log.err
[2026-02-06 21:58:12] -rw-r--r-- 1 yeti boinc     21594 Feb  6 21:58 stderr.txt
[2026-02-06 21:58:12] HITS file was successfully produced:
[2026-02-06 21:58:12] -rw------- 1 yeti boinc 180457355 Feb  6 21:57 shared/HITS.pool.root.1
[2026-02-06 21:58:12]  *** Contents of shared directory: ***
[2026-02-06 21:58:12] insgesamt 668952
[2026-02-06 21:58:12] -rw-r--r-- 2 yeti boinc     15845 Feb  6 20:30 start_atlas.sh
[2026-02-06 21:58:12] -rw-r--r-- 2 yeti boinc    597962 Feb  6 20:30 input.tar.gz
[2026-02-06 21:58:12] -rw-r--r-- 2 yeti boinc 502828793 Feb  6 20:30 ATLAS.root_0
[2026-02-06 21:58:12] -rw------- 1 yeti boinc 180457355 Feb  6 21:57 HITS.pool.root.1
[2026-02-06 21:58:12] -rw------- 1 yeti boinc   1095680 Feb  6 21:58 result.tar.gz
21:58:13 (995341): run_atlas exited; CPU time 19730.625620
21:58:13 (995341): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN