Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:38:32 (69653): wrapper (7.7.26015): starting
21:38:32 (69653): wrapper: running run_atlas (--nthreads 2)
[2026-02-06 21:38:32] Arguments: --nthreads 2
[2026-02-06 21:38:32] Threads: 2
[2026-02-06 21:38:32] Checking for CVMFS
[2026-02-06 21:38:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 21:38:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 21:38:32] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 21:38:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 21:38:32] 2.9.2.0 2935 613 55056 155959 0 49 30235997 36864001 0 130560 0 197584 99.974 27386 22228 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 21:38:32] CVMFS is ok
[2026-02-06 21:38:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 21:38:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 21:38:32] Further information can be found at the LHC@home message board.
[2026-02-06 21:38:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 21:38:32] Checking for apptainer binary...
[2026-02-06 21:38:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 21:38:32] Running /usr/bin/apptainer --version
[2026-02-06 21:38:32] apptainer version 1.4.1-1.1
[2026-02-06 21:38:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 21:38:32] magicA244
[2026-02-06 21:38:32] apptainer works
[2026-02-06 21:38:32] Set ATHENA_PROC_NUMBER=2
[2026-02-06 21:38:32] Set ATHENA_CORE_NUMBER=2
[2026-02-06 21:38:32] Starting ATLAS job with PandaID=6996532906
[2026-02-06 21:38:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 23:36:15]  *** The last 200 lines of the pilot log: ***
[2026-02-06 23:36:15] 2026-02-06 22:35:55,275 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 23:36:15] 2026-02-06 22:35:55,275 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 23:36:15] 2026-02-06 22:35:55,275 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 23:36:15] 2026-02-06 22:35:55,275 | INFO     | job 6996532906 has completed (purged errors)
[2026-02-06 23:36:15] 2026-02-06 22:35:55,275 | INFO     | overall cleanup function is called
[2026-02-06 23:36:15] 2026-02-06 22:35:56,281 | INFO     | --- collectZombieJob: --- 10, [78085]
[2026-02-06 23:36:15] 2026-02-06 22:35:56,281 | INFO     | zombie collector waiting for pid 78085
[2026-02-06 23:36:15] 2026-02-06 22:35:56,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 23:36:15] 2026-02-06 22:35:56,282 | INFO     | collected zombie processes
[2026-02-06 23:36:15] 2026-02-06 22:35:56,282 | INFO     | will attempt to kill all subprocesses of pid=78085
[2026-02-06 23:36:15] 2026-02-06 22:35:56,313 | INFO     | process IDs to be killed: [78085] (in reverse order)
[2026-02-06 23:36:15] 2026-02-06 22:35:56,332 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 23:36:15] 2026-02-06 22:35:56,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 23:36:15] 2026-02-06 22:35:56,333 | INFO     | did not find any defunct processes belonging to 78085
[2026-02-06 23:36:15] 2026-02-06 22:35:56,333 | INFO     | did not find any defunct processes belonging to 78085
[2026-02-06 23:36:15] 2026-02-06 22:35:56,334 | INFO     | ready for new job
[2026-02-06 23:36:15] 2026-02-06 22:35:56,334 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 23:36:15] 2026-02-06 22:35:56,334 | INFO     | **************************************
[2026-02-06 23:36:15] 2026-02-06 22:35:56,334 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 23:36:15] 2026-02-06 22:35:56,334 | INFO     | **************************************
[2026-02-06 23:36:15] 2026-02-06 22:35:56,334 | INFO     | 
[2026-02-06 23:36:15] 2026-02-06 22:35:56,334 | INFO     | architecture information:
[2026-02-06 23:36:15] 2026-02-06 22:35:56,335 | INFO     | executing command: cat /etc/os-release
[2026-02-06 23:36:15] 2026-02-06 22:35:56,342 | INFO     | cat /etc/os-release:
[2026-02-06 23:36:15] NAME="CentOS Linux"
[2026-02-06 23:36:15] VERSION="7 (Core)"
[2026-02-06 23:36:15] ID="centos"
[2026-02-06 23:36:15] ID_LIKE="rhel fedora"
[2026-02-06 23:36:15] VERSION_ID="7"
[2026-02-06 23:36:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 23:36:15] ANSI_COLOR="0;31"
[2026-02-06 23:36:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 23:36:15] HOME_URL="https://www.centos.org/"
[2026-02-06 23:36:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 23:36:15] 
[2026-02-06 23:36:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 23:36:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 23:36:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 23:36:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 23:36:15] 
[2026-02-06 23:36:15] 2026-02-06 22:35:56,342 | INFO     | **************************************
[2026-02-06 23:36:15] 2026-02-06 22:35:56,846 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | INFO     | sufficient remaining disk space (491596546048 B)
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | INFO     | update_server=False
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 23:36:15] 2026-02-06 22:35:56,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 23:36:15] 2026-02-06 22:35:56,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 23:36:15] 2026-02-06 22:35:56,858 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 23:36:15] 2026-02-06 22:35:56,858 | INFO     | aborting loop
[2026-02-06 23:36:15] 2026-02-06 22:35:56,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 23:36:15] 2026-02-06 22:35:56,906 | INFO     | all payload control threads have been joined
[2026-02-06 23:36:15] 2026-02-06 22:35:57,137 | INFO     | all data control threads have been joined
[2026-02-06 23:36:15] 2026-02-06 22:35:57,723 | INFO     | all job control threads have been joined
[2026-02-06 23:36:15] 2026-02-06 22:35:57,863 | INFO     | [job] queue monitor thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:57,864 | INFO     | [job] job monitor thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:57,865 | INFO     | [job] retrieve thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:57,912 | INFO     | [payload] control thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:57,947 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:58,006 | INFO     | [data] copytool_in thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:58,064 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:58,108 | INFO     | [payload] validate_post thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:58,143 | INFO     | [data] control thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:58,729 | INFO     | [job] control thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:58,730 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:58,910 | INFO     | [data] copytool_out thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:59,032 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 23:36:15] 2026-02-06 22:35:59,174 | INFO     | [payload] failed_post thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:35:59,221 | INFO     | [job] validate thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:36:03,040 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:36:04,583 | INFO     | [monitor] cgroup control has ended
[2026-02-06 23:36:15] 2026-02-06 22:36:07,742 | INFO     | job.realtimelogging is not enabled
[2026-02-06 23:36:15] 2026-02-06 22:36:08,747 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 23:36:15] 2026-02-06 22:36:10,534 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180567045952)>', '<ExcThread(monitor, started 140179939518208)>']
[2026-02-06 23:36:15] 2026-02-06 22:36:10,935 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 23:36:15] 2026-02-06 22:36:10,935 | INFO     | [monitor] control thread has ended
[2026-02-06 23:36:15] 2026-02-06 22:36:15,560 | INFO     | all workflow threads have been joined
[2026-02-06 23:36:15] 2026-02-06 22:36:15,560 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 23:36:15] 2026-02-06 22:36:15,561 | INFO     | traces error code: 0
[2026-02-06 23:36:15] 2026-02-06 22:36:15,561 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 23:36:15] 2026-02-06 22:36:15,602 [wrapper] ==== pilot stdout END ====
[2026-02-06 23:36:15] 2026-02-06 22:36:15,605 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 23:36:15] 2026-02-06 22:36:15,607 [wrapper] pilotpid: 73678
[2026-02-06 23:36:15] 2026-02-06 22:36:15,609 [wrapper] Pilot exit status: 0
[2026-02-06 23:36:15] 2026-02-06 22:36:15,614 [wrapper] pandaids: 6996532906
[2026-02-06 23:36:15] 2026-02-06 22:36:15,626 [wrapper] cleanup supervisor_pilot   83278 73679
[2026-02-06 23:36:15] 2026-02-06 22:36:15,628 [wrapper] Test setup, not cleaning
[2026-02-06 23:36:15] 2026-02-06 22:36:15,630 [wrapper] apfmon messages muted
[2026-02-06 23:36:15] 2026-02-06 22:36:15,632 [wrapper] ==== wrapper stdout END ====
[2026-02-06 23:36:15] 2026-02-06 22:36:15,634 [wrapper] ==== wrapper stderr END ====
[2026-02-06 23:36:15]  *** Error codes and diagnostics ***
[2026-02-06 23:36:15]     "exeErrorCode": 0,
[2026-02-06 23:36:15]     "exeErrorDiag": "",
[2026-02-06 23:36:15]     "pilotErrorCode": 0,
[2026-02-06 23:36:15]     "pilotErrorDiag": "",
[2026-02-06 23:36:15]  *** Listing of results directory ***
[2026-02-06 23:36:15] total 660152
[2026-02-06 23:36:15] -rwx------ 1 boinc boinc     36322 Feb  6 10:17 runpilot2-wrapper.sh
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc      5111 Feb  6 10:21 queuedata.json
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc    584627 Feb  6 10:21 pilot3.tar.gz
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc       100 Feb  6 21:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 23:36:15] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 21:38 run_atlas
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc       105 Feb  6 21:38 job.xml
[2026-02-06 23:36:15] -rw-r--r-- 2 boinc boinc 490440703 Feb  6 21:38 EVNT.48442096._000073.pool.root.1
[2026-02-06 23:36:15] -rw-r--r-- 2 boinc boinc    597953 Feb  6 21:38 input.tar.gz
[2026-02-06 23:36:15] -rw-r--r-- 2 boinc boinc     15845 Feb  6 21:38 start_atlas.sh
[2026-02-06 23:36:15] drwxrwx--x 2 boinc boinc      4096 Feb  6 21:38 shared
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc         0 Feb  6 21:38 boinc_setup_complete
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc      6208 Feb  6 21:38 init_data.xml
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc         0 Feb  6 21:38 boinc_lockfile
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc      2529 Feb  6 21:38 pandaJob.out
[2026-02-06 23:36:15] -rw------- 1 boinc boinc   1009520 Feb  6 21:38 agis_schedconf.cvmfs.json
[2026-02-06 23:36:15] -rw------- 1 boinc boinc   1513088 Feb  6 21:38 agis_ddmendpoints.agis.ALL.json
[2026-02-06 23:36:15] -rw------- 1 boinc boinc       429 Feb  6 21:38 workernode_map.json
[2026-02-06 23:36:15] drwx------ 5 boinc boinc      4096 Feb  6 21:38 pilot3
[2026-02-06 23:36:15] -rw------- 1 boinc boinc        95 Feb  6 23:35 pilot_heartbeat.json
[2026-02-06 23:36:15] -rw------- 1 boinc boinc 179082708 Feb  6 23:35 HITS.48442098._003612.pool.root.1
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc       530 Feb  6 23:35 boinc_task_state.xml
[2026-02-06 23:36:15] -rw------- 1 boinc boinc      1027 Feb  6 23:35 memory_monitor_summary.json
[2026-02-06 23:36:15] -rw------- 1 boinc boinc    265893 Feb  6 23:35 log.48442098._003612.job.log.tgz.1
[2026-02-06 23:36:15] -rw------- 1 boinc boinc      6308 Feb  6 23:35 heartbeat.json
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc        27 Feb  6 23:36 wrapper_checkpoint.txt
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc      8192 Feb  6 23:36 boinc_mmap_file
[2026-02-06 23:36:15] -rw------- 1 boinc boinc      4624 Feb  6 23:36 pilotlog.txt
[2026-02-06 23:36:15] -rw------- 1 boinc boinc   1007004 Feb  6 23:36 log.48442098._003612.job.log.1
[2026-02-06 23:36:15] -rw------- 1 boinc boinc       357 Feb  6 23:36 output.list
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc       620 Feb  6 23:36 runtime_log
[2026-02-06 23:36:15] -rw------- 1 boinc boinc   1290240 Feb  6 23:36 result.tar.gz
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc      8911 Feb  6 23:36 runtime_log.err
[2026-02-06 23:36:15] -rw------- 1 boinc boinc       660 Feb  6 23:36 JC7KDmj8W88n9Rq4apOajLDm4fhM0noT9bVooX4SDmNNYKDmAeJMNo.diag
[2026-02-06 23:36:15] -rw-r--r-- 1 boinc boinc     11101 Feb  6 23:36 stderr.txt
[2026-02-06 23:36:15] HITS file was successfully produced:
[2026-02-06 23:36:15] -rw------- 1 boinc boinc 179082708 Feb  6 23:35 shared/HITS.pool.root.1
[2026-02-06 23:36:15]  *** Contents of shared directory: ***
[2026-02-06 23:36:15] total 655704
[2026-02-06 23:36:15] -rw-r--r-- 2 boinc boinc 490440703 Feb  6 21:38 ATLAS.root_0
[2026-02-06 23:36:15] -rw-r--r-- 2 boinc boinc    597953 Feb  6 21:38 input.tar.gz
[2026-02-06 23:36:15] -rw-r--r-- 2 boinc boinc     15845 Feb  6 21:38 start_atlas.sh
[2026-02-06 23:36:15] -rw------- 1 boinc boinc 179082708 Feb  6 23:35 HITS.pool.root.1
[2026-02-06 23:36:15] -rw------- 1 boinc boinc   1290240 Feb  6 23:36 result.tar.gz
23:36:17 (69653): run_atlas exited; CPU time 13610.801319
23:36:17 (69653): called boinc_finish(0)

</stderr_txt>
]]>

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