Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:55:45 (2172823): wrapper (7.7.26015): starting
02:55:45 (2172823): wrapper: running run_atlas (--nthreads 2)
[2026-02-07 02:55:45] Arguments: --nthreads 2
[2026-02-07 02:55:45] Threads: 2
[2026-02-07 02:55:45] Checking for CVMFS
[2026-02-07 02:55:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 02:55:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 02:55:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 02:55:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 02:55:45] 2.9.2.0 2050517 1252 56108 155966 2 50 33303804 36864001 0 130560 0 367452 99.975 50644 20330 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 02:55:45] CVMFS is ok
[2026-02-07 02:55:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 02:55:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 02:55:45] Further information can be found at the LHC@home message board.
[2026-02-07 02:55:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 02:55:45] Checking for apptainer binary...
[2026-02-07 02:55:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 02:55:45] Running /usr/bin/apptainer --version
[2026-02-07 02:55:45] apptainer version 1.4.1-1.1
[2026-02-07 02:55:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 02:55:45] atlasA229
[2026-02-07 02:55:45] apptainer works
[2026-02-07 02:55:45] Set ATHENA_PROC_NUMBER=2
[2026-02-07 02:55:45] Set ATHENA_CORE_NUMBER=2
[2026-02-07 02:55:45] Starting ATLAS job with PandaID=6996533031
[2026-02-07 02:55:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 04:51:21]  *** The last 200 lines of the pilot log: ***
[2026-02-07 04:51:21] 2026-02-07 03:50:35,003 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 04:51:21] 2026-02-07 03:50:35,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 04:51:21] 2026-02-07 03:50:35,003 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 04:51:21] 2026-02-07 03:50:35,003 | INFO     | job 6996533031 has completed (purged errors)
[2026-02-07 04:51:21] 2026-02-07 03:50:35,003 | INFO     | overall cleanup function is called
[2026-02-07 04:51:21] 2026-02-07 03:50:36,009 | INFO     | --- collectZombieJob: --- 10, [2181259]
[2026-02-07 04:51:21] 2026-02-07 03:50:36,010 | INFO     | zombie collector waiting for pid 2181259
[2026-02-07 04:51:21] 2026-02-07 03:50:36,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 04:51:21] 2026-02-07 03:50:36,010 | INFO     | collected zombie processes
[2026-02-07 04:51:21] 2026-02-07 03:50:36,010 | INFO     | will attempt to kill all subprocesses of pid=2181259
[2026-02-07 04:51:21] 2026-02-07 03:50:36,042 | INFO     | process IDs to be killed: [2181259] (in reverse order)
[2026-02-07 04:51:21] 2026-02-07 03:50:36,063 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 04:51:21] 2026-02-07 03:50:36,063 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 04:51:21] 2026-02-07 03:50:36,063 | INFO     | did not find any defunct processes belonging to 2181259
[2026-02-07 04:51:21] 2026-02-07 03:50:36,064 | INFO     | did not find any defunct processes belonging to 2181259
[2026-02-07 04:51:21] 2026-02-07 03:50:36,064 | INFO     | ready for new job
[2026-02-07 04:51:21] 2026-02-07 03:50:36,064 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 04:51:21] 2026-02-07 03:50:36,065 | INFO     | **************************************
[2026-02-07 04:51:21] 2026-02-07 03:50:36,065 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 04:51:21] 2026-02-07 03:50:36,065 | INFO     | **************************************
[2026-02-07 04:51:21] 2026-02-07 03:50:36,065 | INFO     | 
[2026-02-07 04:51:21] 2026-02-07 03:50:36,065 | INFO     | architecture information:
[2026-02-07 04:51:21] 2026-02-07 03:50:36,065 | INFO     | executing command: cat /etc/os-release
[2026-02-07 04:51:21] 2026-02-07 03:50:36,073 | INFO     | cat /etc/os-release:
[2026-02-07 04:51:21] NAME="CentOS Linux"
[2026-02-07 04:51:21] VERSION="7 (Core)"
[2026-02-07 04:51:21] ID="centos"
[2026-02-07 04:51:21] ID_LIKE="rhel fedora"
[2026-02-07 04:51:21] VERSION_ID="7"
[2026-02-07 04:51:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 04:51:21] ANSI_COLOR="0;31"
[2026-02-07 04:51:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 04:51:21] HOME_URL="https://www.centos.org/"
[2026-02-07 04:51:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 04:51:21] 
[2026-02-07 04:51:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 04:51:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 04:51:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 04:51:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 04:51:21] 
[2026-02-07 04:51:21] 2026-02-07 03:50:36,074 | INFO     | **************************************
[2026-02-07 04:51:21] 2026-02-07 03:50:36,577 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 04:51:21] 2026-02-07 03:50:36,589 | INFO     | sufficient remaining disk space (325135106048 B)
[2026-02-07 04:51:21] 2026-02-07 03:50:36,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 04:51:21] 2026-02-07 03:50:36,589 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 04:51:21] 2026-02-07 03:50:36,589 | INFO     | update_server=False
[2026-02-07 04:51:21] 2026-02-07 03:50:36,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 04:51:21] 2026-02-07 03:50:36,589 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 04:51:21] 2026-02-07 03:50:36,727 | INFO     | all job control threads have been joined
[2026-02-07 04:51:21] 2026-02-07 03:50:36,779 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 04:51:21] 2026-02-07 03:50:37,037 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 04:51:21] 2026-02-07 03:50:37,038 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 04:51:21] 2026-02-07 03:50:37,038 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 04:51:21] 2026-02-07 03:50:37,038 | INFO     | will abort loop
[2026-02-07 04:51:21] 2026-02-07 03:50:37,208 | INFO     | all data control threads have been joined
[2026-02-07 04:51:21] 2026-02-07 03:50:37,263 | INFO     | all payload control threads have been joined
[2026-02-07 04:51:21] 2026-02-07 03:50:37,595 | INFO     | [job] retrieve thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:37,596 | INFO     | [job] queue monitor thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:37,733 | INFO     | [job] control thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,044 | INFO     | [job] job monitor thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,214 | INFO     | [data] control thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,269 | INFO     | [payload] control thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,289 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 04:51:21] 2026-02-07 03:50:38,436 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,437 | INFO     | [job] validate thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,544 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,735 | INFO     | [data] copytool_in thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,785 | INFO     | [data] copytool_out thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:38,820 | INFO     | [payload] validate_post thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:39,175 | INFO     | [payload] failed_post thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:42,314 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:50:47,031 | INFO     | job.realtimelogging is not enabled
[2026-02-07 04:51:21] 2026-02-07 03:50:48,036 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 04:51:21] 2026-02-07 03:51:06,810 | INFO     | PID=2176850 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 04:51:21] 2026-02-07 03:51:06,810 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 04:51:21] 2026-02-07 03:51:06,810 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 04:51:21] 2026-02-07 03:51:06,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 04:51:21] 2026-02-07 03:51:16,457 | INFO     | [monitor] cgroup control has ended
[2026-02-07 04:51:21] 2026-02-07 03:51:16,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140712014509888)>', '<ExcThread(monitor, started 140711215216384)>']
[2026-02-07 04:51:21] 2026-02-07 03:51:16,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 04:51:21] 2026-02-07 03:51:16,859 | INFO     | [monitor] control thread has ended
[2026-02-07 04:51:21] 2026-02-07 03:51:21,864 | INFO     | all workflow threads have been joined
[2026-02-07 04:51:21] 2026-02-07 03:51:21,864 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 04:51:21] 2026-02-07 03:51:21,865 | INFO     | traces error code: 0
[2026-02-07 04:51:21] 2026-02-07 03:51:21,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 04:51:21] 2026-02-07 03:51:21,909 [wrapper] ==== pilot stdout END ====
[2026-02-07 04:51:21] 2026-02-07 03:51:21,912 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 04:51:21] 2026-02-07 03:51:21,915 [wrapper] pilotpid: 2176850
[2026-02-07 04:51:21] 2026-02-07 03:51:21,917 [wrapper] Pilot exit status: 0
[2026-02-07 04:51:21] 2026-02-07 03:51:21,923 [wrapper] pandaids: 6996533031
[2026-02-07 04:51:21] 2026-02-07 03:51:21,936 [wrapper] cleanup supervisor_pilot 2186099 2176851
[2026-02-07 04:51:21] 2026-02-07 03:51:21,938 [wrapper] Test setup, not cleaning
[2026-02-07 04:51:21] 2026-02-07 03:51:21,940 [wrapper] apfmon messages muted
[2026-02-07 04:51:21] 2026-02-07 03:51:21,942 [wrapper] ==== wrapper stdout END ====
[2026-02-07 04:51:21] 2026-02-07 03:51:21,944 [wrapper] ==== wrapper stderr END ====
[2026-02-07 04:51:21]  *** Error codes and diagnostics ***
[2026-02-07 04:51:21]     "exeErrorCode": 0,
[2026-02-07 04:51:21]     "exeErrorDiag": "",
[2026-02-07 04:51:21]     "pilotErrorCode": 0,
[2026-02-07 04:51:21]     "pilotErrorDiag": "",
[2026-02-07 04:51:21]  *** Listing of results directory ***
[2026-02-07 04:51:21] total 663352
[2026-02-07 04:51:21] -rwx------ 1 boinc boinc     36322 Feb  6 10:17 runpilot2-wrapper.sh
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc      5111 Feb  6 10:21 queuedata.json
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc    584627 Feb  6 10:21 pilot3.tar.gz
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc       100 Feb  7 02:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 04:51:21] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 02:55 run_atlas
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc       105 Feb  7 02:55 job.xml
[2026-02-07 04:51:21] -rw-r--r-- 2 boinc boinc 500201177 Feb  7 02:55 EVNT.48442096._000075.pool.root.1
[2026-02-07 04:51:21] -rw-r--r-- 2 boinc boinc    597949 Feb  7 02:55 input.tar.gz
[2026-02-07 04:51:21] -rw-r--r-- 2 boinc boinc     15845 Feb  7 02:55 start_atlas.sh
[2026-02-07 04:51:21] drwxrwx--x 2 boinc boinc      4096 Feb  7 02:55 shared
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc         0 Feb  7 02:55 boinc_setup_complete
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc      6206 Feb  7 02:55 init_data.xml
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc         0 Feb  7 02:55 boinc_lockfile
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc      2530 Feb  7 02:55 pandaJob.out
[2026-02-07 04:51:21] -rw------- 1 boinc boinc   1009520 Feb  7 02:56 agis_schedconf.cvmfs.json
[2026-02-07 04:51:21] -rw------- 1 boinc boinc   1513088 Feb  7 02:56 agis_ddmendpoints.agis.ALL.json
[2026-02-07 04:51:21] -rw------- 1 boinc boinc       422 Feb  7 02:56 workernode_map.json
[2026-02-07 04:51:21] drwx------ 5 boinc boinc      4096 Feb  7 02:56 pilot3
[2026-02-07 04:51:21] -rw------- 1 boinc boinc 172573872 Feb  7 04:50 HITS.48442098._003737.pool.root.1
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc       530 Feb  7 04:50 boinc_task_state.xml
[2026-02-07 04:51:21] -rw------- 1 boinc boinc      1011 Feb  7 04:50 memory_monitor_summary.json
[2026-02-07 04:51:21] -rw------- 1 boinc boinc        95 Feb  7 04:50 pilot_heartbeat.json
[2026-02-07 04:51:21] -rw------- 1 boinc boinc    294392 Feb  7 04:50 log.48442098._003737.job.log.tgz.1
[2026-02-07 04:51:21] -rw------- 1 boinc boinc      6298 Feb  7 04:50 heartbeat.json
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc      8192 Feb  7 04:50 boinc_mmap_file
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc        27 Feb  7 04:50 wrapper_checkpoint.txt
[2026-02-07 04:51:21] -rw------- 1 boinc boinc      5006 Feb  7 04:51 pilotlog.txt
[2026-02-07 04:51:21] -rw------- 1 boinc boinc    990661 Feb  7 04:51 log.48442098._003737.job.log.1
[2026-02-07 04:51:21] -rw------- 1 boinc boinc       357 Feb  7 04:51 output.list
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc       620 Feb  7 04:51 runtime_log
[2026-02-07 04:51:21] -rw------- 1 boinc boinc   1300480 Feb  7 04:51 result.tar.gz
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc      8911 Feb  7 04:51 runtime_log.err
[2026-02-07 04:51:21] -rw------- 1 boinc boinc       660 Feb  7 04:51 qKPKDml8W88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmzlYKDmAyNeTn.diag
[2026-02-07 04:51:21] -rw-r--r-- 1 boinc boinc     11433 Feb  7 04:51 stderr.txt
[2026-02-07 04:51:21] HITS file was successfully produced:
[2026-02-07 04:51:21] -rw------- 1 boinc boinc 172573872 Feb  7 04:50 shared/HITS.pool.root.1
[2026-02-07 04:51:21]  *** Contents of shared directory: ***
[2026-02-07 04:51:21] total 658892
[2026-02-07 04:51:21] -rw-r--r-- 2 boinc boinc 500201177 Feb  7 02:55 ATLAS.root_0
[2026-02-07 04:51:21] -rw-r--r-- 2 boinc boinc    597949 Feb  7 02:55 input.tar.gz
[2026-02-07 04:51:21] -rw-r--r-- 2 boinc boinc     15845 Feb  7 02:55 start_atlas.sh
[2026-02-07 04:51:21] -rw------- 1 boinc boinc 172573872 Feb  7 04:50 HITS.pool.root.1
[2026-02-07 04:51:21] -rw------- 1 boinc boinc   1300480 Feb  7 04:51 result.tar.gz
04:51:23 (2172823): run_atlas exited; CPU time 13345.216924
04:51:23 (2172823): called boinc_finish(0)

</stderr_txt>
]]>

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