Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:55:40 (3262868): wrapper (7.7.26015): starting
00:55:40 (3262868): wrapper: running run_atlas (--nthreads 3)
[2026-02-07 00:55:40] Arguments: --nthreads 3
[2026-02-07 00:55:40] Threads: 3
[2026-02-07 00:55:40] Checking for CVMFS
[2026-02-07 00:55:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 00:55:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 00:55:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 00:55:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 00:55:41] 2.9.2.0 3110276 954 66592 155964 0 50 24069438 36864001 0 130560 0 439930 99.980 43982 16659 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 00:55:41] CVMFS is ok
[2026-02-07 00:55:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 00:55:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 00:55:41] Further information can be found at the LHC@home message board.
[2026-02-07 00:55:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 00:55:41] Checking for apptainer binary...
[2026-02-07 00:55:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 00:55:41] Running /usr/bin/apptainer --version
[2026-02-07 00:55:41] apptainer version 1.4.1-1.1
[2026-02-07 00:55:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 00:55:41] thA327
[2026-02-07 00:55:41] apptainer works
[2026-02-07 00:55:41] Set ATHENA_PROC_NUMBER=3
[2026-02-07 00:55:41] Set ATHENA_CORE_NUMBER=3
[2026-02-07 00:55:41] Starting ATLAS job with PandaID=6994436319
[2026-02-07 00:55:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 02:29:11]  *** The last 200 lines of the pilot log: ***
[2026-02-07 02:29:11] 2026-02-07 01:28:39,958 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 02:29:11] 2026-02-07 01:28:39,958 | INFO     | job 6994436319 has completed (purged errors)
[2026-02-07 02:29:11] 2026-02-07 01:28:39,958 | INFO     | overall cleanup function is called
[2026-02-07 02:29:11] 2026-02-07 01:28:40,961 | INFO     | --- collectZombieJob: --- 10, [3271331]
[2026-02-07 02:29:11] 2026-02-07 01:28:40,961 | INFO     | zombie collector waiting for pid 3271331
[2026-02-07 02:29:11] 2026-02-07 01:28:40,961 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 02:29:11] 2026-02-07 01:28:40,961 | INFO     | collected zombie processes
[2026-02-07 02:29:11] 2026-02-07 01:28:40,961 | INFO     | will attempt to kill all subprocesses of pid=3271331
[2026-02-07 02:29:11] 2026-02-07 01:28:41,002 | INFO     | process IDs to be killed: [3271331] (in reverse order)
[2026-02-07 02:29:11] 2026-02-07 01:28:41,026 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 02:29:11] 2026-02-07 01:28:41,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 02:29:11] 2026-02-07 01:28:41,028 | INFO     | did not find any defunct processes belonging to 3271331
[2026-02-07 02:29:11] 2026-02-07 01:28:41,029 | INFO     | did not find any defunct processes belonging to 3271331
[2026-02-07 02:29:11] 2026-02-07 01:28:41,029 | INFO     | ready for new job
[2026-02-07 02:29:11] 2026-02-07 01:28:41,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 02:29:11] 2026-02-07 01:28:41,029 | INFO     | **************************************
[2026-02-07 02:29:11] 2026-02-07 01:28:41,029 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-07 02:29:11] 2026-02-07 01:28:41,029 | INFO     | **************************************
[2026-02-07 02:29:11] 2026-02-07 01:28:41,029 | INFO     | 
[2026-02-07 02:29:11] 2026-02-07 01:28:41,030 | INFO     | architecture information:
[2026-02-07 02:29:11] 2026-02-07 01:28:41,030 | INFO     | executing command: cat /etc/os-release
[2026-02-07 02:29:11] 2026-02-07 01:28:41,038 | INFO     | cat /etc/os-release:
[2026-02-07 02:29:11] NAME="CentOS Linux"
[2026-02-07 02:29:11] VERSION="7 (Core)"
[2026-02-07 02:29:11] ID="centos"
[2026-02-07 02:29:11] ID_LIKE="rhel fedora"
[2026-02-07 02:29:11] VERSION_ID="7"
[2026-02-07 02:29:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 02:29:11] ANSI_COLOR="0;31"
[2026-02-07 02:29:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 02:29:11] HOME_URL="https://www.centos.org/"
[2026-02-07 02:29:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 02:29:11] 
[2026-02-07 02:29:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 02:29:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 02:29:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 02:29:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 02:29:11] 
[2026-02-07 02:29:11] 2026-02-07 01:28:41,038 | INFO     | **************************************
[2026-02-07 02:29:11] 2026-02-07 01:28:41,541 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 02:29:11] 2026-02-07 01:28:41,554 | INFO     | sufficient remaining disk space (377572294656 B)
[2026-02-07 02:29:11] 2026-02-07 01:28:41,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 02:29:11] 2026-02-07 01:28:41,554 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 02:29:11] 2026-02-07 01:28:41,554 | INFO     | update_server=False
[2026-02-07 02:29:11] 2026-02-07 01:28:41,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 02:29:11] 2026-02-07 01:28:41,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 02:29:11] 2026-02-07 01:28:41,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 02:29:11] 2026-02-07 01:28:42,175 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 02:29:11] 2026-02-07 01:28:42,176 | INFO     | aborting loop
[2026-02-07 02:29:11] 2026-02-07 01:28:42,470 | INFO     | all payload control threads have been joined
[2026-02-07 02:29:11] 2026-02-07 01:28:42,542 | INFO     | all job control threads have been joined
[2026-02-07 02:29:11] 2026-02-07 01:28:42,560 | INFO     | [job] queue monitor thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:42,560 | INFO     | [job] retrieve thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:42,660 | INFO     | all data control threads have been joined
[2026-02-07 02:29:11] 2026-02-07 01:28:43,181 | INFO     | [job] job monitor thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,201 | INFO     | [job] validate thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,319 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,389 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,407 | INFO     | [payload] failed_post thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,475 | INFO     | [payload] control thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,484 | INFO     | [data] copytool_in thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,548 | INFO     | [job] control thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,560 | INFO     | [data] copytool_out thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,581 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,665 | INFO     | [data] control thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:43,769 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:44,010 | INFO     | [payload] validate_post thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:44,160 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 02:29:11] 2026-02-07 01:28:48,167 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 02:29:11] 2026-02-07 01:28:56,235 | INFO     | [monitor] cgroup control has ended
[2026-02-07 02:29:11] 2026-02-07 01:28:57,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140259114391360)>', '<ExcThread(monitor, started 140258230384384)>']
[2026-02-07 02:29:11] 2026-02-07 01:29:02,574 | INFO     | all workflow threads have been joined
[2026-02-07 02:29:11] 2026-02-07 01:29:02,574 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 02:29:11] 2026-02-07 01:29:02,574 | INFO     | traces error code: 0
[2026-02-07 02:29:11] 2026-02-07 01:29:02,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 02:29:11] 2026-02-07 01:29:11,317 | INFO     | PID=3266907 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 02:29:11] 2026-02-07 01:29:11,317 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 02:29:11] 2026-02-07 01:29:11,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 02:29:11] 2026-02-07 01:29:11,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 02:29:11] 2026-02-07 01:29:11,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 02:29:11] 2026-02-07 01:29:11,317 | INFO     | [monitor] control thread has ended
[2026-02-07 02:29:11] 2026-02-07 01:29:11,362 [wrapper] ==== pilot stdout END ====
[2026-02-07 02:29:11] 2026-02-07 01:29:11,364 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 02:29:11] 2026-02-07 01:29:11,367 [wrapper] pilotpid: 3266907
[2026-02-07 02:29:11] 2026-02-07 01:29:11,369 [wrapper] Pilot exit status: 0
[2026-02-07 02:29:11] 2026-02-07 01:29:11,376 [wrapper] pandaids: 6994436319
[2026-02-07 02:29:11] 2026-02-07 01:29:11,392 [wrapper] cleanup supervisor_pilot 3276513 3266908
[2026-02-07 02:29:11] 2026-02-07 01:29:11,394 [wrapper] Test setup, not cleaning
[2026-02-07 02:29:11] 2026-02-07 01:29:11,396 [wrapper] apfmon messages muted
[2026-02-07 02:29:11] 2026-02-07 01:29:11,399 [wrapper] ==== wrapper stdout END ====
[2026-02-07 02:29:11] 2026-02-07 01:29:11,401 [wrapper] ==== wrapper stderr END ====
[2026-02-07 02:29:11]  *** Error codes and diagnostics ***
[2026-02-07 02:29:11]     "exeErrorCode": 0,
[2026-02-07 02:29:11]     "exeErrorDiag": "",
[2026-02-07 02:29:11]     "pilotErrorCode": 0,
[2026-02-07 02:29:11]     "pilotErrorDiag": "",
[2026-02-07 02:29:11]  *** Listing of results directory ***
[2026-02-07 02:29:11] total 675496
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc      5111 Feb  3 22:56 queuedata.json
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc    584422 Feb  3 22:56 pilot3.tar.gz
[2026-02-07 02:29:11] -rwx------ 1 boinc boinc     36322 Feb  3 22:56 runpilot2-wrapper.sh
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc       100 Feb  7 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 02:29:11] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 00:55 run_atlas
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc       105 Feb  7 00:55 job.xml
[2026-02-07 02:29:11] -rw-r--r-- 2 boinc boinc 494639104 Feb  7 00:55 EVNT.48318040._000172.pool.root.1
[2026-02-07 02:29:11] -rw-r--r-- 2 boinc boinc    597768 Feb  7 00:55 input.tar.gz
[2026-02-07 02:29:11] -rw-r--r-- 2 boinc boinc     15845 Feb  7 00:55 start_atlas.sh
[2026-02-07 02:29:11] drwxrwx--x 2 boinc boinc      4096 Feb  7 00:55 shared
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc         0 Feb  7 00:55 boinc_setup_complete
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc      6446 Feb  7 00:55 init_data.xml
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc         0 Feb  7 00:55 boinc_lockfile
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc      2535 Feb  7 00:55 pandaJob.out
[2026-02-07 02:29:11] -rw------- 1 boinc boinc   1009520 Feb  7 00:55 agis_schedconf.cvmfs.json
[2026-02-07 02:29:11] -rw------- 1 boinc boinc   1513088 Feb  7 00:55 agis_ddmendpoints.agis.ALL.json
[2026-02-07 02:29:11] -rw------- 1 boinc boinc       422 Feb  7 00:55 workernode_map.json
[2026-02-07 02:29:11] drwx------ 5 boinc boinc      4096 Feb  7 00:55 pilot3
[2026-02-07 02:29:11] -rw------- 1 boinc boinc        95 Feb  7 02:28 pilot_heartbeat.json
[2026-02-07 02:29:11] -rw------- 1 boinc boinc 190983623 Feb  7 02:28 HITS.48318042._008843.pool.root.1
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc       531 Feb  7 02:28 boinc_task_state.xml
[2026-02-07 02:29:11] -rw------- 1 boinc boinc      1029 Feb  7 02:28 memory_monitor_summary.json
[2026-02-07 02:29:11] -rw------- 1 boinc boinc    270947 Feb  7 02:28 log.48318042._008843.job.log.tgz.1
[2026-02-07 02:29:11] -rw------- 1 boinc boinc      6294 Feb  7 02:28 heartbeat.json
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc        27 Feb  7 02:28 wrapper_checkpoint.txt
[2026-02-07 02:29:11] -rw------- 1 boinc boinc       747 Feb  7 02:29 pilotlog.txt
[2026-02-07 02:29:11] -rw------- 1 boinc boinc    810803 Feb  7 02:29 log.48318042._008843.job.log.1
[2026-02-07 02:29:11] -rw------- 1 boinc boinc       357 Feb  7 02:29 output.list
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc       620 Feb  7 02:29 runtime_log
[2026-02-07 02:29:11] -rw------- 1 boinc boinc   1095680 Feb  7 02:29 result.tar.gz
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc      8192 Feb  7 02:29 boinc_mmap_file
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc      8896 Feb  7 02:29 runtime_log.err
[2026-02-07 02:29:11] -rw------- 1 boinc boinc       657 Feb  7 02:29 ZbELDmzYd78n9Rq4apOajLDm4fhM0noT9bVooX4SDmIUVKDmjGmk9m.diag
[2026-02-07 02:29:11] -rw-r--r-- 1 boinc boinc     10902 Feb  7 02:29 stderr.txt
[2026-02-07 02:29:11] HITS file was successfully produced:
[2026-02-07 02:29:11] -rw------- 1 boinc boinc 190983623 Feb  7 02:28 shared/HITS.pool.root.1
[2026-02-07 02:29:11]  *** Contents of shared directory: ***
[2026-02-07 02:29:11] total 671236
[2026-02-07 02:29:11] -rw-r--r-- 2 boinc boinc 494639104 Feb  7 00:55 ATLAS.root_0
[2026-02-07 02:29:11] -rw-r--r-- 2 boinc boinc    597768 Feb  7 00:55 input.tar.gz
[2026-02-07 02:29:11] -rw-r--r-- 2 boinc boinc     15845 Feb  7 00:55 start_atlas.sh
[2026-02-07 02:29:11] -rw------- 1 boinc boinc 190983623 Feb  7 02:28 HITS.pool.root.1
[2026-02-07 02:29:11] -rw------- 1 boinc boinc   1095680 Feb  7 02:29 result.tar.gz
02:29:33 (3262868): run_atlas exited; CPU time 16109.719943
02:29:33 (3262868): called boinc_finish(0)

</stderr_txt>
]]>

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