Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:27:50 (738366): wrapper (7.7.26015): starting
00:27:50 (738366): wrapper: running run_atlas (--nthreads 3)
[2026-02-07 00:27:50] Arguments: --nthreads 3
[2026-02-07 00:27:50] Threads: 3
[2026-02-07 00:27:50] Checking for CVMFS
[2026-02-07 00:27:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 00:27:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 00:27:50] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 00:27:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 00:27:51] 2.9.2.0 185998 177814 108388 155964 1 50 24513287 36864001 12 130560 1 56332953 99.974 5905121 1832 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 00:27:51] CVMFS is ok
[2026-02-07 00:27:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 00:27:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 00:27:51] Further information can be found at the LHC@home message board.
[2026-02-07 00:27:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 00:27:51] Checking for apptainer binary...
[2026-02-07 00:27:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 00:27:51] Running /usr/bin/apptainer --version
[2026-02-07 00:27:51] apptainer version 1.4.1-1.1
[2026-02-07 00:27:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 00:27:51] thA387a
[2026-02-07 00:27:51] apptainer works
[2026-02-07 00:27:51] Set ATHENA_PROC_NUMBER=3
[2026-02-07 00:27:51] Set ATHENA_CORE_NUMBER=3
[2026-02-07 00:27:51] Starting ATLAS job with PandaID=6985638234
[2026-02-07 00:27:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 01:50:13]  *** The last 200 lines of the pilot log: ***
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | job 6985638234 has completed (purged errors)
[2026-02-07 01:50:13] 2026-02-07 00:49:53,308 | INFO     | overall cleanup function is called
[2026-02-07 01:50:13] 2026-02-07 00:49:54,310 | INFO     | --- collectZombieJob: --- 10, [746824]
[2026-02-07 01:50:13] 2026-02-07 00:49:54,310 | INFO     | zombie collector waiting for pid 746824
[2026-02-07 01:50:13] 2026-02-07 00:49:54,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 01:50:13] 2026-02-07 00:49:54,310 | INFO     | collected zombie processes
[2026-02-07 01:50:13] 2026-02-07 00:49:54,310 | INFO     | will attempt to kill all subprocesses of pid=746824
[2026-02-07 01:50:13] 2026-02-07 00:49:54,352 | INFO     | process IDs to be killed: [746824] (in reverse order)
[2026-02-07 01:50:13] 2026-02-07 00:49:54,375 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 01:50:13] 2026-02-07 00:49:54,375 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 01:50:13] 2026-02-07 00:49:54,377 | INFO     | did not find any defunct processes belonging to 746824
[2026-02-07 01:50:13] 2026-02-07 00:49:54,378 | INFO     | did not find any defunct processes belonging to 746824
[2026-02-07 01:50:13] 2026-02-07 00:49:54,378 | INFO     | ready for new job
[2026-02-07 01:50:13] 2026-02-07 00:49:54,378 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 01:50:13] 2026-02-07 00:49:54,378 | INFO     | **************************************
[2026-02-07 01:50:13] 2026-02-07 00:49:54,378 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-07 01:50:13] 2026-02-07 00:49:54,378 | INFO     | **************************************
[2026-02-07 01:50:13] 2026-02-07 00:49:54,379 | INFO     | 
[2026-02-07 01:50:13] 2026-02-07 00:49:54,379 | INFO     | architecture information:
[2026-02-07 01:50:13] 2026-02-07 00:49:54,379 | INFO     | executing command: cat /etc/os-release
[2026-02-07 01:50:13] 2026-02-07 00:49:54,388 | INFO     | cat /etc/os-release:
[2026-02-07 01:50:13] NAME="CentOS Linux"
[2026-02-07 01:50:13] VERSION="7 (Core)"
[2026-02-07 01:50:13] ID="centos"
[2026-02-07 01:50:13] ID_LIKE="rhel fedora"
[2026-02-07 01:50:13] VERSION_ID="7"
[2026-02-07 01:50:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 01:50:13] ANSI_COLOR="0;31"
[2026-02-07 01:50:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 01:50:13] HOME_URL="https://www.centos.org/"
[2026-02-07 01:50:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 01:50:13] 
[2026-02-07 01:50:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 01:50:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 01:50:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 01:50:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 01:50:13] 
[2026-02-07 01:50:13] 2026-02-07 00:49:54,388 | INFO     | **************************************
[2026-02-07 01:50:13] 2026-02-07 00:49:54,891 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 01:50:13] 2026-02-07 00:49:54,904 | INFO     | sufficient remaining disk space (230436110336 B)
[2026-02-07 01:50:13] 2026-02-07 00:49:54,904 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 01:50:13] 2026-02-07 00:49:54,904 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 01:50:13] 2026-02-07 00:49:54,904 | INFO     | update_server=False
[2026-02-07 01:50:13] 2026-02-07 00:49:54,904 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 01:50:13] 2026-02-07 00:49:54,904 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-07 01:50:13] 2026-02-07 00:49:54,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 01:50:13] 2026-02-07 00:49:54,904 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 01:50:13] 2026-02-07 00:49:54,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 01:50:13] 2026-02-07 00:49:54,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 01:50:13] 2026-02-07 00:49:55,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 01:50:13] 2026-02-07 00:49:55,389 | INFO     | aborting loop
[2026-02-07 01:50:13] 2026-02-07 00:49:55,448 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 01:50:13] 2026-02-07 00:49:55,876 | INFO     | all job control threads have been joined
[2026-02-07 01:50:13] 2026-02-07 00:49:55,909 | INFO     | [job] retrieve thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:55,910 | INFO     | [job] queue monitor thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:55,975 | INFO     | all data control threads have been joined
[2026-02-07 01:50:13] 2026-02-07 00:49:56,394 | INFO     | [job] job monitor thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:56,402 | INFO     | all payload control threads have been joined
[2026-02-07 01:50:13] 2026-02-07 00:49:56,416 | INFO     | [payload] failed_post thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:56,789 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:56,882 | INFO     | [job] control thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:56,935 | INFO     | [job] validate thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:56,980 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:56,980 | INFO     | [data] control thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:57,040 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:57,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 01:50:13] 2026-02-07 00:49:57,156 | INFO     | [data] copytool_in thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:57,317 | INFO     | [payload] validate_post thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:57,408 | INFO     | [payload] control thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:49:57,454 | INFO     | [data] copytool_out thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:50:01,063 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:50:05,212 | INFO     | job.realtimelogging is not enabled
[2026-02-07 01:50:13] 2026-02-07 00:50:06,217 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 01:50:13] 2026-02-07 00:50:06,714 | INFO     | [monitor] cgroup control has ended
[2026-02-07 01:50:13] 2026-02-07 00:50:07,917 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862100891456)>', '<ExcThread(monitor, started 139861751215872)>']
[2026-02-07 01:50:13] 2026-02-07 00:50:07,948 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 01:50:13] 2026-02-07 00:50:07,948 | INFO     | [monitor] control thread has ended
[2026-02-07 01:50:13] 2026-02-07 00:50:12,943 | INFO     | all workflow threads have been joined
[2026-02-07 01:50:13] 2026-02-07 00:50:12,943 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 01:50:13] 2026-02-07 00:50:12,943 | INFO     | traces error code: 0
[2026-02-07 01:50:13] 2026-02-07 00:50:12,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 01:50:13] 2026-02-07 00:50:12,992 [wrapper] ==== pilot stdout END ====
[2026-02-07 01:50:13] 2026-02-07 00:50:12,994 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 01:50:13] 2026-02-07 00:50:12,997 [wrapper] pilotpid: 742403
[2026-02-07 01:50:13] 2026-02-07 00:50:12,999 [wrapper] Pilot exit status: 0
[2026-02-07 01:50:13] 2026-02-07 00:50:13,006 [wrapper] pandaids: 6985638234
[2026-02-07 01:50:13] 2026-02-07 00:50:13,021 [wrapper] cleanup supervisor_pilot  751937 742404
[2026-02-07 01:50:13] 2026-02-07 00:50:13,023 [wrapper] Test setup, not cleaning
[2026-02-07 01:50:13] 2026-02-07 00:50:13,026 [wrapper] apfmon messages muted
[2026-02-07 01:50:13] 2026-02-07 00:50:13,028 [wrapper] ==== wrapper stdout END ====
[2026-02-07 01:50:13] 2026-02-07 00:50:13,030 [wrapper] ==== wrapper stderr END ====
[2026-02-07 01:50:13]  *** Error codes and diagnostics ***
[2026-02-07 01:50:13]     "exeErrorCode": 0,
[2026-02-07 01:50:13]     "exeErrorDiag": "",
[2026-02-07 01:50:13]     "pilotErrorCode": 0,
[2026-02-07 01:50:13]     "pilotErrorDiag": "",
[2026-02-07 01:50:13]  *** Listing of results directory ***
[2026-02-07 01:50:13] total 671484
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc    584422 Jan 30 13:16 pilot3.tar.gz
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc      5111 Jan 30 13:59 queuedata.json
[2026-02-07 01:50:13] -rwx------ 1 boinc boinc     36322 Jan 30 13:59 runpilot2-wrapper.sh
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc       100 Feb  7 00:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 01:50:13] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 00:27 run_atlas
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc       105 Feb  7 00:27 job.xml
[2026-02-07 01:50:13] -rw-r--r-- 2 boinc boinc 495251826 Feb  7 00:27 EVNT.48318008._000111.pool.root.1
[2026-02-07 01:50:13] -rw-r--r-- 2 boinc boinc    597757 Feb  7 00:27 input.tar.gz
[2026-02-07 01:50:13] -rw-r--r-- 2 boinc boinc     15845 Feb  7 00:27 start_atlas.sh
[2026-02-07 01:50:13] drwxrwx--x 2 boinc boinc      4096 Feb  7 00:27 shared
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc         0 Feb  7 00:27 boinc_setup_complete
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc      6440 Feb  7 00:27 init_data.xml
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc         0 Feb  7 00:27 boinc_lockfile
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc      2524 Feb  7 00:27 pandaJob.out
[2026-02-07 01:50:13] -rw------- 1 boinc boinc   1009520 Feb  7 00:27 agis_schedconf.cvmfs.json
[2026-02-07 01:50:13] -rw------- 1 boinc boinc   1513088 Feb  7 00:27 agis_ddmendpoints.agis.ALL.json
[2026-02-07 01:50:13] -rw------- 1 boinc boinc       428 Feb  7 00:28 workernode_map.json
[2026-02-07 01:50:13] drwx------ 5 boinc boinc      4096 Feb  7 00:28 pilot3
[2026-02-07 01:50:13] -rw------- 1 boinc boinc        95 Feb  7 01:49 pilot_heartbeat.json
[2026-02-07 01:50:13] -rw------- 1 boinc boinc 186408062 Feb  7 01:49 HITS.48318010._005869.pool.root.1
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc       530 Feb  7 01:49 boinc_task_state.xml
[2026-02-07 01:50:13] -rw------- 1 boinc boinc      1025 Feb  7 01:49 memory_monitor_summary.json
[2026-02-07 01:50:13] -rw------- 1 boinc boinc    289981 Feb  7 01:49 log.48318010._005869.job.log.tgz.1
[2026-02-07 01:50:13] -rw------- 1 boinc boinc      6323 Feb  7 01:49 heartbeat.json
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc      8192 Feb  7 01:49 boinc_mmap_file
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc        27 Feb  7 01:49 wrapper_checkpoint.txt
[2026-02-07 01:50:13] -rw------- 1 boinc boinc      4624 Feb  7 01:50 pilotlog.txt
[2026-02-07 01:50:13] -rw------- 1 boinc boinc    719705 Feb  7 01:50 log.48318010._005869.job.log.1
[2026-02-07 01:50:13] -rw------- 1 boinc boinc       357 Feb  7 01:50 output.list
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc       620 Feb  7 01:50 runtime_log
[2026-02-07 01:50:13] -rw------- 1 boinc boinc   1024000 Feb  7 01:50 result.tar.gz
[2026-02-07 01:50:13] -rw------- 1 boinc boinc       658 Feb  7 01:50 yqbNDmYH358nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmcELKDmps1Con.diag
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc      8901 Feb  7 01:50 runtime_log.err
[2026-02-07 01:50:13] -rw-r--r-- 1 boinc boinc     11837 Feb  7 01:50 stderr.txt
[2026-02-07 01:50:13] HITS file was successfully produced:
[2026-02-07 01:50:13] -rw------- 1 boinc boinc 186408062 Feb  7 01:49 shared/HITS.pool.root.1
[2026-02-07 01:50:13]  *** Contents of shared directory: ***
[2026-02-07 01:50:13] total 667292
[2026-02-07 01:50:13] -rw-r--r-- 2 boinc boinc 495251826 Feb  7 00:27 ATLAS.root_0
[2026-02-07 01:50:13] -rw-r--r-- 2 boinc boinc    597757 Feb  7 00:27 input.tar.gz
[2026-02-07 01:50:13] -rw-r--r-- 2 boinc boinc     15845 Feb  7 00:27 start_atlas.sh
[2026-02-07 01:50:13] -rw------- 1 boinc boinc 186408062 Feb  7 01:49 HITS.pool.root.1
[2026-02-07 01:50:13] -rw------- 1 boinc boinc   1024000 Feb  7 01:50 result.tar.gz
01:50:14 (738366): run_atlas exited; CPU time 13973.765955
01:50:14 (738366): called boinc_finish(0)

</stderr_txt>
]]>

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