Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:45:33 (55789): wrapper (7.7.26015): starting
19:45:33 (55789): wrapper: running run_atlas (--nthreads 2)
[2026-02-06 19:45:33] Arguments: --nthreads 2
[2026-02-06 19:45:33] Threads: 2
[2026-02-06 19:45:33] Checking for CVMFS
[2026-02-06 19:45:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 19:45:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 19:45:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 19:45:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 19:45:34] 2.9.2.0 2935 500 54688 155956 0 50 30223566 36864000 0 130560 0 157173 99.970 23326 20864 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 19:45:34] CVMFS is ok
[2026-02-06 19:45:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 19:45:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 19:45:34] Further information can be found at the LHC@home message board.
[2026-02-06 19:45:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 19:45:34] Checking for apptainer binary...
[2026-02-06 19:45:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 19:45:34] Running /usr/bin/apptainer --version
[2026-02-06 19:45:34] apptainer version 1.4.1-1.1
[2026-02-06 19:45:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 19:45:34] magicA244
[2026-02-06 19:45:34] apptainer works
[2026-02-06 19:45:34] Set ATHENA_PROC_NUMBER=2
[2026-02-06 19:45:34] Set ATHENA_CORE_NUMBER=2
[2026-02-06 19:45:34] Starting ATLAS job with PandaID=6996583530
[2026-02-06 19:45:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 21:38:10]  *** The last 200 lines of the pilot log: ***
[2026-02-06 21:38:10] 2026-02-06 20:37:37,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 21:38:10] 2026-02-06 20:37:37,894 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 21:38:10] 2026-02-06 20:37:37,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 21:38:10] 2026-02-06 20:37:37,895 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 21:38:10] 2026-02-06 20:37:37,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 21:38:10] 2026-02-06 20:37:37,895 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 21:38:10] 2026-02-06 20:37:37,895 | INFO     | job 6996583530 has completed (purged errors)
[2026-02-06 21:38:10] 2026-02-06 20:37:37,895 | INFO     | overall cleanup function is called
[2026-02-06 21:38:10] 2026-02-06 20:37:38,901 | INFO     | --- collectZombieJob: --- 10, [64221]
[2026-02-06 21:38:10] 2026-02-06 20:37:38,901 | INFO     | zombie collector waiting for pid 64221
[2026-02-06 21:38:10] 2026-02-06 20:37:38,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 21:38:10] 2026-02-06 20:37:38,903 | INFO     | collected zombie processes
[2026-02-06 21:38:10] 2026-02-06 20:37:38,904 | INFO     | will attempt to kill all subprocesses of pid=64221
[2026-02-06 21:38:10] 2026-02-06 20:37:38,934 | INFO     | process IDs to be killed: [64221] (in reverse order)
[2026-02-06 21:38:10] 2026-02-06 20:37:38,955 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 21:38:10] 2026-02-06 20:37:38,955 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 21:38:10] 2026-02-06 20:37:38,956 | INFO     | did not find any defunct processes belonging to 64221
[2026-02-06 21:38:10] 2026-02-06 20:37:38,957 | INFO     | did not find any defunct processes belonging to 64221
[2026-02-06 21:38:10] 2026-02-06 20:37:38,957 | INFO     | ready for new job
[2026-02-06 21:38:10] 2026-02-06 20:37:38,957 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 21:38:10] 2026-02-06 20:37:38,957 | INFO     | **************************************
[2026-02-06 21:38:10] 2026-02-06 20:37:38,957 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 21:38:10] 2026-02-06 20:37:38,957 | INFO     | **************************************
[2026-02-06 21:38:10] 2026-02-06 20:37:38,957 | INFO     | 
[2026-02-06 21:38:10] 2026-02-06 20:37:38,958 | INFO     | architecture information:
[2026-02-06 21:38:10] 2026-02-06 20:37:38,958 | INFO     | executing command: cat /etc/os-release
[2026-02-06 21:38:10] 2026-02-06 20:37:38,965 | INFO     | cat /etc/os-release:
[2026-02-06 21:38:10] NAME="CentOS Linux"
[2026-02-06 21:38:10] VERSION="7 (Core)"
[2026-02-06 21:38:10] ID="centos"
[2026-02-06 21:38:10] ID_LIKE="rhel fedora"
[2026-02-06 21:38:10] VERSION_ID="7"
[2026-02-06 21:38:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 21:38:10] ANSI_COLOR="0;31"
[2026-02-06 21:38:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 21:38:10] HOME_URL="https://www.centos.org/"
[2026-02-06 21:38:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 21:38:10] 
[2026-02-06 21:38:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 21:38:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 21:38:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 21:38:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 21:38:10] 
[2026-02-06 21:38:10] 2026-02-06 20:37:38,966 | INFO     | **************************************
[2026-02-06 21:38:10] 2026-02-06 20:37:39,469 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 21:38:10] 2026-02-06 20:37:39,480 | INFO     | sufficient remaining disk space (491778998272 B)
[2026-02-06 21:38:10] 2026-02-06 20:37:39,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 21:38:10] 2026-02-06 20:37:39,480 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 21:38:10] 2026-02-06 20:37:39,480 | INFO     | update_server=False
[2026-02-06 21:38:10] 2026-02-06 20:37:39,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 21:38:10] 2026-02-06 20:37:39,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 21:38:10] 2026-02-06 20:37:39,481 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 21:38:10] 2026-02-06 20:37:39,481 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 21:38:10] 2026-02-06 20:37:39,481 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 21:38:10] 2026-02-06 20:37:39,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 21:38:10] 2026-02-06 20:37:39,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 21:38:10] 2026-02-06 20:37:39,947 | INFO     | all data control threads have been joined
[2026-02-06 21:38:10] 2026-02-06 20:37:40,030 | INFO     | all job control threads have been joined
[2026-02-06 21:38:10] 2026-02-06 20:37:40,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 21:38:10] 2026-02-06 20:37:40,172 | INFO     | aborting loop
[2026-02-06 21:38:10] 2026-02-06 20:37:40,486 | INFO     | [job] retrieve thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:40,487 | INFO     | [job] queue monitor thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:40,506 | INFO     | all payload control threads have been joined
[2026-02-06 21:38:10] 2026-02-06 20:37:40,953 | INFO     | [data] control thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:40,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 21:38:10] 2026-02-06 20:37:41,036 | INFO     | [job] control thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,113 | INFO     | [payload] failed_post thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,178 | INFO     | [job] job monitor thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,262 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,311 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,512 | INFO     | [payload] control thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,690 | INFO     | [payload] validate_post thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,710 | INFO     | [job] validate thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,757 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,815 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:41,935 | INFO     | [data] copytool_in thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:42,968 | INFO     | [data] copytool_out thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:37:43,488 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 21:38:10] 2026-02-06 20:38:04,095 | INFO     | [monitor] cgroup control has ended
[2026-02-06 21:38:10] 2026-02-06 20:38:05,090 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140708866762560)>', '<ExcThread(monitor, started 140708136601344)>']
[2026-02-06 21:38:10] 2026-02-06 20:38:05,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 21:38:10] 2026-02-06 20:38:05,614 | INFO     | [monitor] control thread has ended
[2026-02-06 21:38:10] 2026-02-06 20:38:10,116 | INFO     | all workflow threads have been joined
[2026-02-06 21:38:10] 2026-02-06 20:38:10,117 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 21:38:10] 2026-02-06 20:38:10,118 | INFO     | traces error code: 0
[2026-02-06 21:38:10] 2026-02-06 20:38:10,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 21:38:10] 2026-02-06 20:38:10,160 [wrapper] ==== pilot stdout END ====
[2026-02-06 21:38:10] 2026-02-06 20:38:10,162 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 21:38:10] 2026-02-06 20:38:10,165 [wrapper] pilotpid: 59815
[2026-02-06 21:38:10] 2026-02-06 20:38:10,167 [wrapper] Pilot exit status: 0
[2026-02-06 21:38:10] 2026-02-06 20:38:10,173 [wrapper] pandaids: 6996583530
[2026-02-06 21:38:10] 2026-02-06 20:38:10,185 [wrapper] cleanup supervisor_pilot   69496 59816
[2026-02-06 21:38:10] 2026-02-06 20:38:10,187 [wrapper] Test setup, not cleaning
[2026-02-06 21:38:10] 2026-02-06 20:38:10,189 [wrapper] apfmon messages muted
[2026-02-06 21:38:10] 2026-02-06 20:38:10,191 [wrapper] ==== wrapper stdout END ====
[2026-02-06 21:38:10] 2026-02-06 20:38:10,193 [wrapper] ==== wrapper stderr END ====
[2026-02-06 21:38:10]  *** Error codes and diagnostics ***
[2026-02-06 21:38:10]     "exeErrorCode": 0,
[2026-02-06 21:38:10]     "exeErrorDiag": "",
[2026-02-06 21:38:10]     "pilotErrorCode": 0,
[2026-02-06 21:38:10]     "pilotErrorDiag": "",
[2026-02-06 21:38:10]  *** Listing of results directory ***
[2026-02-06 21:38:10] total 666300
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc    584627 Feb  6 10:13 pilot3.tar.gz
[2026-02-06 21:38:10] -rwx------ 1 boinc boinc     36322 Feb  6 10:13 runpilot2-wrapper.sh
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc      5111 Feb  6 10:13 queuedata.json
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc       100 Feb  6 19:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 21:38:10] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 19:45 run_atlas
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc       105 Feb  6 19:45 job.xml
[2026-02-06 21:38:10] -rw-r--r-- 2 boinc boinc 495372180 Feb  6 19:45 EVNT.48310747._000039.pool.root.1
[2026-02-06 21:38:10] -rw-r--r-- 2 boinc boinc    597947 Feb  6 19:45 input.tar.gz
[2026-02-06 21:38:10] -rw-r--r-- 2 boinc boinc     15845 Feb  6 19:45 start_atlas.sh
[2026-02-06 21:38:10] drwxrwx--x 2 boinc boinc      4096 Feb  6 19:45 shared
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc         0 Feb  6 19:45 boinc_setup_complete
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc      6208 Feb  6 19:45 init_data.xml
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc         0 Feb  6 19:45 boinc_lockfile
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc      2521 Feb  6 19:45 pandaJob.out
[2026-02-06 21:38:10] -rw------- 1 boinc boinc   1009512 Feb  6 19:45 agis_schedconf.cvmfs.json
[2026-02-06 21:38:10] -rw------- 1 boinc boinc   1513088 Feb  6 19:45 agis_ddmendpoints.agis.ALL.json
[2026-02-06 21:38:10] -rw------- 1 boinc boinc       422 Feb  6 19:45 workernode_map.json
[2026-02-06 21:38:10] drwx------ 5 boinc boinc      4096 Feb  6 19:45 pilot3
[2026-02-06 21:38:10] -rw------- 1 boinc boinc 180510054 Feb  6 21:37 HITS.48310749._004977.pool.root.1
[2026-02-06 21:38:10] -rw------- 1 boinc boinc        95 Feb  6 21:37 pilot_heartbeat.json
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc       530 Feb  6 21:37 boinc_task_state.xml
[2026-02-06 21:38:10] -rw------- 1 boinc boinc      1012 Feb  6 21:37 memory_monitor_summary.json
[2026-02-06 21:38:10] -rw------- 1 boinc boinc    273974 Feb  6 21:37 log.48310749._004977.job.log.tgz.1
[2026-02-06 21:38:10] -rw------- 1 boinc boinc      6298 Feb  6 21:37 heartbeat.json
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc        27 Feb  6 21:37 wrapper_checkpoint.txt
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc      8192 Feb  6 21:37 boinc_mmap_file
[2026-02-06 21:38:10] -rw------- 1 boinc boinc      4552 Feb  6 21:38 pilotlog.txt
[2026-02-06 21:38:10] -rw------- 1 boinc boinc    965850 Feb  6 21:38 log.48310749._004977.job.log.1
[2026-02-06 21:38:10] -rw------- 1 boinc boinc       357 Feb  6 21:38 output.list
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc       620 Feb  6 21:38 runtime_log
[2026-02-06 21:38:10] -rw------- 1 boinc boinc   1259520 Feb  6 21:38 result.tar.gz
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc      8911 Feb  6 21:38 runtime_log.err
[2026-02-06 21:38:10] -rw------- 1 boinc boinc       660 Feb  6 21:38 bSPLDmQ5W88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmMZYKDmi9ZKNo.diag
[2026-02-06 21:38:10] -rw-r--r-- 1 boinc boinc     11314 Feb  6 21:38 stderr.txt
[2026-02-06 21:38:10] HITS file was successfully produced:
[2026-02-06 21:38:10] -rw------- 1 boinc boinc 180510054 Feb  6 21:37 shared/HITS.pool.root.1
[2026-02-06 21:38:10]  *** Contents of shared directory: ***
[2026-02-06 21:38:10] total 661884
[2026-02-06 21:38:10] -rw-r--r-- 2 boinc boinc 495372180 Feb  6 19:45 ATLAS.root_0
[2026-02-06 21:38:10] -rw-r--r-- 2 boinc boinc    597947 Feb  6 19:45 input.tar.gz
[2026-02-06 21:38:10] -rw-r--r-- 2 boinc boinc     15845 Feb  6 19:45 start_atlas.sh
[2026-02-06 21:38:10] -rw------- 1 boinc boinc 180510054 Feb  6 21:37 HITS.pool.root.1
[2026-02-06 21:38:10] -rw------- 1 boinc boinc   1259520 Feb  6 21:38 result.tar.gz
21:38:11 (55789): run_atlas exited; CPU time 13008.246067
21:38:11 (55789): called boinc_finish(0)

</stderr_txt>
]]>

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