Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:42:46 (2131970): wrapper (7.7.26015): starting
19:42:46 (2131970): wrapper: running run_atlas (--nthreads 2)
[2026-02-06 19:42:46] Arguments: --nthreads 2
[2026-02-06 19:42:46] Threads: 2
[2026-02-06 19:42:46] Checking for CVMFS
[2026-02-06 19:42:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 19:42:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 19:42:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 19:42:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 19:42:47] 2.9.2.0 2050517 819 54732 155956 2 50 33254883 36864000 0 130560 0 244744 99.972 36973 19888 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 19:42:47] CVMFS is ok
[2026-02-06 19:42:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 19:42:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 19:42:47] Further information can be found at the LHC@home message board.
[2026-02-06 19:42:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 19:42:47] Checking for apptainer binary...
[2026-02-06 19:42:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 19:42:47] Running /usr/bin/apptainer --version
[2026-02-06 19:42:47] apptainer version 1.4.1-1.1
[2026-02-06 19:42:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 19:42:47] atlasA229
[2026-02-06 19:42:47] apptainer works
[2026-02-06 19:42:47] Set ATHENA_PROC_NUMBER=2
[2026-02-06 19:42:47] Set ATHENA_CORE_NUMBER=2
[2026-02-06 19:42:47] Starting ATLAS job with PandaID=6996409388
[2026-02-06 19:42:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 22:31:28]  *** The last 200 lines of the pilot log: ***
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 22:31:28] 2026-02-06 21:30:35,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,618 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 22:31:28] 2026-02-06 21:30:35,618 | INFO     | job 6996409388 has completed (purged errors)
[2026-02-06 22:31:28] 2026-02-06 21:30:35,618 | INFO     | overall cleanup function is called
[2026-02-06 22:31:28] 2026-02-06 21:30:36,624 | INFO     | --- collectZombieJob: --- 10, [2140404]
[2026-02-06 22:31:28] 2026-02-06 21:30:36,624 | INFO     | zombie collector waiting for pid 2140404
[2026-02-06 22:31:28] 2026-02-06 21:30:36,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 22:31:28] 2026-02-06 21:30:36,625 | INFO     | collected zombie processes
[2026-02-06 22:31:28] 2026-02-06 21:30:36,625 | INFO     | will attempt to kill all subprocesses of pid=2140404
[2026-02-06 22:31:28] 2026-02-06 21:30:36,659 | INFO     | process IDs to be killed: [2140404] (in reverse order)
[2026-02-06 22:31:28] 2026-02-06 21:30:36,679 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 22:31:28] 2026-02-06 21:30:36,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 22:31:28] 2026-02-06 21:30:36,680 | INFO     | did not find any defunct processes belonging to 2140404
[2026-02-06 22:31:28] 2026-02-06 21:30:36,681 | INFO     | did not find any defunct processes belonging to 2140404
[2026-02-06 22:31:28] 2026-02-06 21:30:36,681 | INFO     | ready for new job
[2026-02-06 22:31:28] 2026-02-06 21:30:36,681 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 22:31:28] 2026-02-06 21:30:36,681 | INFO     | **************************************
[2026-02-06 22:31:28] 2026-02-06 21:30:36,682 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 22:31:28] 2026-02-06 21:30:36,682 | INFO     | **************************************
[2026-02-06 22:31:28] 2026-02-06 21:30:36,682 | INFO     | 
[2026-02-06 22:31:28] 2026-02-06 21:30:36,682 | INFO     | architecture information:
[2026-02-06 22:31:28] 2026-02-06 21:30:36,682 | INFO     | executing command: cat /etc/os-release
[2026-02-06 22:31:28] 2026-02-06 21:30:36,690 | INFO     | cat /etc/os-release:
[2026-02-06 22:31:28] NAME="CentOS Linux"
[2026-02-06 22:31:28] VERSION="7 (Core)"
[2026-02-06 22:31:28] ID="centos"
[2026-02-06 22:31:28] ID_LIKE="rhel fedora"
[2026-02-06 22:31:28] VERSION_ID="7"
[2026-02-06 22:31:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 22:31:28] ANSI_COLOR="0;31"
[2026-02-06 22:31:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 22:31:28] HOME_URL="https://www.centos.org/"
[2026-02-06 22:31:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 22:31:28] 
[2026-02-06 22:31:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 22:31:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 22:31:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 22:31:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 22:31:28] 
[2026-02-06 22:31:28] 2026-02-06 21:30:36,690 | INFO     | **************************************
[2026-02-06 22:31:28] 2026-02-06 21:30:37,194 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | INFO     | sufficient remaining disk space (324751327232 B)
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | INFO     | update_server=False
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 22:31:28] 2026-02-06 21:30:37,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 22:31:28] 2026-02-06 21:30:37,321 | INFO     | all data control threads have been joined
[2026-02-06 22:31:28] 2026-02-06 21:30:37,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 22:31:28] 2026-02-06 21:30:37,579 | INFO     | aborting loop
[2026-02-06 22:31:28] 2026-02-06 21:30:37,587 | INFO     | all job control threads have been joined
[2026-02-06 22:31:28] 2026-02-06 21:30:37,996 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 22:31:28] 2026-02-06 21:30:38,213 | INFO     | [job] retrieve thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:38,213 | INFO     | [job] queue monitor thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:38,327 | INFO     | [data] control thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:38,327 | INFO     | job.realtimelogging is not enabled
[2026-02-06 22:31:28] 2026-02-06 21:30:38,469 | INFO     | all payload control threads have been joined
[2026-02-06 22:31:28] 2026-02-06 21:30:38,585 | INFO     | [job] job monitor thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:38,593 | INFO     | [job] control thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:38,637 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:38,865 | INFO     | [payload] validate_post thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:38,902 | INFO     | [job] validate thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:39,009 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:39,099 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:39,180 | INFO     | [data] copytool_in thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:39,333 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:39,475 | INFO     | [payload] control thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:39,491 | INFO     | [payload] failed_post thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:40,003 | INFO     | [data] copytool_out thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:30:41,211 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 22:31:28] 2026-02-06 21:31:21,642 | INFO     | [monitor] cgroup control has ended
[2026-02-06 22:31:28] 2026-02-06 21:31:23,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140292129548096)>', '<ExcThread(monitor, started 140291768030976)>']
[2026-02-06 22:31:28] 2026-02-06 21:31:24,461 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 22:31:28] 2026-02-06 21:31:24,461 | INFO     | [monitor] control thread has ended
[2026-02-06 22:31:28] 2026-02-06 21:31:28,535 | INFO     | all workflow threads have been joined
[2026-02-06 22:31:28] 2026-02-06 21:31:28,535 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 22:31:28] 2026-02-06 21:31:28,535 | INFO     | traces error code: 0
[2026-02-06 22:31:28] 2026-02-06 21:31:28,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 22:31:28] 2026-02-06 21:31:28,579 [wrapper] ==== pilot stdout END ====
[2026-02-06 22:31:28] 2026-02-06 21:31:28,582 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 22:31:28] 2026-02-06 21:31:28,584 [wrapper] pilotpid: 2135992
[2026-02-06 22:31:28] 2026-02-06 21:31:28,587 [wrapper] Pilot exit status: 0
[2026-02-06 22:31:28] 2026-02-06 21:31:28,592 [wrapper] pandaids: 6996409388
[2026-02-06 22:31:28] 2026-02-06 21:31:28,605 [wrapper] cleanup supervisor_pilot 2145519 2135993
[2026-02-06 22:31:28] 2026-02-06 21:31:28,607 [wrapper] Test setup, not cleaning
[2026-02-06 22:31:28] 2026-02-06 21:31:28,609 [wrapper] apfmon messages muted
[2026-02-06 22:31:28] 2026-02-06 21:31:28,611 [wrapper] ==== wrapper stdout END ====
[2026-02-06 22:31:28] 2026-02-06 21:31:28,613 [wrapper] ==== wrapper stderr END ====
[2026-02-06 22:31:28]  *** Error codes and diagnostics ***
[2026-02-06 22:31:28]     "exeErrorCode": 0,
[2026-02-06 22:31:28]     "exeErrorDiag": "",
[2026-02-06 22:31:28]     "pilotErrorCode": 0,
[2026-02-06 22:31:28]     "pilotErrorDiag": "",
[2026-02-06 22:31:28]  *** Listing of results directory ***
[2026-02-06 22:31:28] total 894844
[2026-02-06 22:31:28] -rwx------ 1 boinc boinc     36322 Feb  6 08:41 runpilot2-wrapper.sh
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc    584627 Feb  6 08:42 pilot3.tar.gz
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc      5111 Feb  6 08:42 queuedata.json
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc       100 Feb  6 19:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 22:31:28] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 19:42 run_atlas
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc       105 Feb  6 19:42 job.xml
[2026-02-06 22:31:28] -rw-r--r-- 2 boinc boinc 652844691 Feb  6 19:42 EVNT.48431111._000056.pool.root.1
[2026-02-06 22:31:28] -rw-r--r-- 2 boinc boinc    597965 Feb  6 19:42 input.tar.gz
[2026-02-06 22:31:28] -rw-r--r-- 2 boinc boinc     15845 Feb  6 19:42 start_atlas.sh
[2026-02-06 22:31:28] drwxrwx--x 2 boinc boinc      4096 Feb  6 19:42 shared
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc         0 Feb  6 19:42 boinc_setup_complete
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc      6206 Feb  6 19:42 init_data.xml
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc         0 Feb  6 19:42 boinc_lockfile
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc      2546 Feb  6 19:42 pandaJob.out
[2026-02-06 22:31:28] -rw------- 1 boinc boinc   1009512 Feb  6 19:43 agis_schedconf.cvmfs.json
[2026-02-06 22:31:28] -rw------- 1 boinc boinc   1513088 Feb  6 19:43 agis_ddmendpoints.agis.ALL.json
[2026-02-06 22:31:28] -rw------- 1 boinc boinc       422 Feb  6 19:43 workernode_map.json
[2026-02-06 22:31:28] drwx------ 5 boinc boinc      4096 Feb  6 19:43 pilot3
[2026-02-06 22:31:28] -rw------- 1 boinc boinc        95 Feb  6 22:29 pilot_heartbeat.json
[2026-02-06 22:31:28] -rw------- 1 boinc boinc 256013515 Feb  6 22:30 HITS.48431113._002785.pool.root.1
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc       531 Feb  6 22:30 boinc_task_state.xml
[2026-02-06 22:31:28] -rw------- 1 boinc boinc      1014 Feb  6 22:30 memory_monitor_summary.json
[2026-02-06 22:31:28] -rw------- 1 boinc boinc    336281 Feb  6 22:30 log.48431113._002785.job.log.tgz.1
[2026-02-06 22:31:28] -rw------- 1 boinc boinc      6307 Feb  6 22:30 heartbeat.json
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc      8192 Feb  6 22:31 boinc_mmap_file
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc        28 Feb  6 22:31 wrapper_checkpoint.txt
[2026-02-06 22:31:28] -rw------- 1 boinc boinc      4624 Feb  6 22:31 pilotlog.txt
[2026-02-06 22:31:28] -rw------- 1 boinc boinc   1432392 Feb  6 22:31 log.48431113._002785.job.log.1
[2026-02-06 22:31:28] -rw------- 1 boinc boinc       357 Feb  6 22:31 output.list
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc       620 Feb  6 22:31 runtime_log
[2026-02-06 22:31:28] -rw------- 1 boinc boinc   1781760 Feb  6 22:31 result.tar.gz
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc      8912 Feb  6 22:31 runtime_log.err
[2026-02-06 22:31:28] -rw------- 1 boinc boinc       662 Feb  6 22:31 6O2NDmzdV88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmOSYKDmctJ8yn.diag
[2026-02-06 22:31:28] -rw-r--r-- 1 boinc boinc     11842 Feb  6 22:31 stderr.txt
[2026-02-06 22:31:28] HITS file was successfully produced:
[2026-02-06 22:31:28] -rw------- 1 boinc boinc 256013515 Feb  6 22:30 shared/HITS.pool.root.1
[2026-02-06 22:31:28]  *** Contents of shared directory: ***
[2026-02-06 22:31:28] total 889908
[2026-02-06 22:31:28] -rw-r--r-- 2 boinc boinc 652844691 Feb  6 19:42 ATLAS.root_0
[2026-02-06 22:31:28] -rw-r--r-- 2 boinc boinc    597965 Feb  6 19:42 input.tar.gz
[2026-02-06 22:31:28] -rw-r--r-- 2 boinc boinc     15845 Feb  6 19:42 start_atlas.sh
[2026-02-06 22:31:28] -rw------- 1 boinc boinc 256013515 Feb  6 22:30 HITS.pool.root.1
[2026-02-06 22:31:28] -rw------- 1 boinc boinc   1781760 Feb  6 22:31 result.tar.gz
22:31:29 (2131970): run_atlas exited; CPU time 19695.253955
22:31:29 (2131970): called boinc_finish(0)

</stderr_txt>
]]>

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