Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:26:25 (3024413): wrapper (7.7.26015): starting
17:26:25 (3024413): wrapper: running run_atlas (--nthreads 3)
[2026-02-06 17:26:25] Arguments: --nthreads 3
[2026-02-06 17:26:25] Threads: 3
[2026-02-06 17:26:25] Checking for CVMFS
[2026-02-06 17:26:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 17:26:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 17:26:25] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 17:26:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 17:26:25] 2.9.2.0 2953292 532 58768 155952 0 50 24918977 36864000 0 130560 0 201519 99.975 25802 24785 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 17:26:25] CVMFS is ok
[2026-02-06 17:26:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 17:26:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 17:26:25] Further information can be found at the LHC@home message board.
[2026-02-06 17:26:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 17:26:25] Checking for apptainer binary...
[2026-02-06 17:26:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 17:26:25] Running /usr/bin/apptainer --version
[2026-02-06 17:26:25] apptainer version 1.4.1-1.1
[2026-02-06 17:26:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 17:26:26] thA333
[2026-02-06 17:26:26] apptainer works
[2026-02-06 17:26:26] Set ATHENA_PROC_NUMBER=3
[2026-02-06 17:26:26] Set ATHENA_CORE_NUMBER=3
[2026-02-06 17:26:26] Starting ATLAS job with PandaID=6996409765
[2026-02-06 17:26:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 19:29:58]  *** The last 200 lines of the pilot log: ***
[2026-02-06 19:29:58] 2026-02-06 18:28:53,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | job 6996409765 has completed (purged errors)
[2026-02-06 19:29:58] 2026-02-06 18:28:53,940 | INFO     | overall cleanup function is called
[2026-02-06 19:29:58] 2026-02-06 18:28:54,946 | INFO     | --- collectZombieJob: --- 10, [3032902]
[2026-02-06 19:29:58] 2026-02-06 18:28:54,947 | INFO     | zombie collector waiting for pid 3032902
[2026-02-06 19:29:58] 2026-02-06 18:28:54,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 19:29:58] 2026-02-06 18:28:54,947 | INFO     | collected zombie processes
[2026-02-06 19:29:58] 2026-02-06 18:28:54,947 | INFO     | will attempt to kill all subprocesses of pid=3032902
[2026-02-06 19:29:58] 2026-02-06 18:28:54,984 | INFO     | process IDs to be killed: [3032902] (in reverse order)
[2026-02-06 19:29:58] 2026-02-06 18:28:55,009 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 19:29:58] 2026-02-06 18:28:55,009 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 19:29:58] 2026-02-06 18:28:55,010 | INFO     | did not find any defunct processes belonging to 3032902
[2026-02-06 19:29:58] 2026-02-06 18:28:55,011 | INFO     | did not find any defunct processes belonging to 3032902
[2026-02-06 19:29:58] 2026-02-06 18:28:55,011 | INFO     | ready for new job
[2026-02-06 19:29:58] 2026-02-06 18:28:55,011 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 19:29:58] 2026-02-06 18:28:55,012 | INFO     | **************************************
[2026-02-06 19:29:58] 2026-02-06 18:28:55,012 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 19:29:58] 2026-02-06 18:28:55,012 | INFO     | **************************************
[2026-02-06 19:29:58] 2026-02-06 18:28:55,012 | INFO     | 
[2026-02-06 19:29:58] 2026-02-06 18:28:55,012 | INFO     | architecture information:
[2026-02-06 19:29:58] 2026-02-06 18:28:55,013 | INFO     | executing command: cat /etc/os-release
[2026-02-06 19:29:58] 2026-02-06 18:28:55,023 | INFO     | cat /etc/os-release:
[2026-02-06 19:29:58] NAME="CentOS Linux"
[2026-02-06 19:29:58] VERSION="7 (Core)"
[2026-02-06 19:29:58] ID="centos"
[2026-02-06 19:29:58] ID_LIKE="rhel fedora"
[2026-02-06 19:29:58] VERSION_ID="7"
[2026-02-06 19:29:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 19:29:58] ANSI_COLOR="0;31"
[2026-02-06 19:29:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 19:29:58] HOME_URL="https://www.centos.org/"
[2026-02-06 19:29:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 19:29:58] 
[2026-02-06 19:29:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 19:29:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 19:29:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 19:29:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 19:29:58] 
[2026-02-06 19:29:58] 2026-02-06 18:28:55,023 | INFO     | **************************************
[2026-02-06 19:29:58] 2026-02-06 18:28:55,526 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 19:29:58] 2026-02-06 18:28:55,536 | INFO     | sufficient remaining disk space (232374927360 B)
[2026-02-06 19:29:58] 2026-02-06 18:28:55,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 19:29:58] 2026-02-06 18:28:55,537 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 19:29:58] 2026-02-06 18:28:55,537 | INFO     | update_server=False
[2026-02-06 19:29:58] 2026-02-06 18:28:55,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 19:29:58] 2026-02-06 18:28:55,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 19:29:58] 2026-02-06 18:28:55,554 | INFO     | all data control threads have been joined
[2026-02-06 19:29:58] 2026-02-06 18:28:55,678 | INFO     | all payload control threads have been joined
[2026-02-06 19:29:58] 2026-02-06 18:28:56,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 19:29:58] 2026-02-06 18:28:56,096 | INFO     | aborting loop
[2026-02-06 19:29:58] 2026-02-06 18:28:56,490 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 19:29:58] 2026-02-06 18:28:56,542 | INFO     | [job] retrieve thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:56,543 | INFO     | [job] queue monitor thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:56,560 | INFO     | [data] control thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:56,684 | INFO     | [payload] control thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:56,749 | INFO     | [payload] failed_post thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:56,915 | INFO     | [job] validate thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:56,940 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:57,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 19:29:58] 2026-02-06 18:28:57,050 | INFO     | all job control threads have been joined
[2026-02-06 19:29:58] 2026-02-06 18:28:57,083 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:57,102 | INFO     | [job] job monitor thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:57,140 | INFO     | [data] copytool_in thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:57,264 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:57,709 | INFO     | [payload] validate_post thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:58,056 | INFO     | [job] control thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:28:58,496 | INFO     | [data] copytool_out thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:29:01,023 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:29:06,196 | INFO     | job.realtimelogging is not enabled
[2026-02-06 19:29:58] 2026-02-06 18:29:07,202 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 19:29:58] 2026-02-06 18:29:26,110 | INFO     | PID=3028466 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 19:29:58] 2026-02-06 18:29:26,110 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 19:29:58] 2026-02-06 18:29:26,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 19:29:58] 2026-02-06 18:29:26,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 19:29:58] 2026-02-06 18:29:52,794 | INFO     | [monitor] cgroup control has ended
[2026-02-06 19:29:58] 2026-02-06 18:29:53,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474503812928)>', '<ExcThread(monitor, started 140473859557120)>']
[2026-02-06 19:29:58] 2026-02-06 18:29:54,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 19:29:58] 2026-02-06 18:29:54,261 | INFO     | [monitor] control thread has ended
[2026-02-06 19:29:58] 2026-02-06 18:29:58,485 | INFO     | all workflow threads have been joined
[2026-02-06 19:29:58] 2026-02-06 18:29:58,487 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 19:29:58] 2026-02-06 18:29:58,487 | INFO     | traces error code: 0
[2026-02-06 19:29:58] 2026-02-06 18:29:58,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 19:29:58] 2026-02-06 18:29:58,535 [wrapper] ==== pilot stdout END ====
[2026-02-06 19:29:58] 2026-02-06 18:29:58,539 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 19:29:58] 2026-02-06 18:29:58,541 [wrapper] pilotpid: 3028466
[2026-02-06 19:29:58] 2026-02-06 18:29:58,544 [wrapper] Pilot exit status: 0
[2026-02-06 19:29:58] 2026-02-06 18:29:58,552 [wrapper] pandaids: 6996409765
[2026-02-06 19:29:58] 2026-02-06 18:29:58,571 [wrapper] cleanup supervisor_pilot 3038450 3028467
[2026-02-06 19:29:58] 2026-02-06 18:29:58,573 [wrapper] Test setup, not cleaning
[2026-02-06 19:29:58] 2026-02-06 18:29:58,576 [wrapper] apfmon messages muted
[2026-02-06 19:29:58] 2026-02-06 18:29:58,578 [wrapper] ==== wrapper stdout END ====
[2026-02-06 19:29:58] 2026-02-06 18:29:58,581 [wrapper] ==== wrapper stderr END ====
[2026-02-06 19:29:58]  *** Error codes and diagnostics ***
[2026-02-06 19:29:58]     "exeErrorCode": 0,
[2026-02-06 19:29:58]     "exeErrorDiag": "",
[2026-02-06 19:29:58]     "pilotErrorCode": 0,
[2026-02-06 19:29:58]     "pilotErrorDiag": "",
[2026-02-06 19:29:58]  *** Listing of results directory ***
[2026-02-06 19:29:58] total 888340
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc    584627 Feb  6 08:38 pilot3.tar.gz
[2026-02-06 19:29:58] -rwx------ 1 boinc boinc     36322 Feb  6 08:39 runpilot2-wrapper.sh
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc      5111 Feb  6 08:39 queuedata.json
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc       100 Feb  6 17:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 19:29:58] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 17:26 run_atlas
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc       105 Feb  6 17:26 job.xml
[2026-02-06 19:29:58] -rw-r--r-- 2 boinc boinc 647916744 Feb  6 17:26 EVNT.48431111._000064.pool.root.1
[2026-02-06 19:29:58] -rw-r--r-- 2 boinc boinc    597951 Feb  6 17:26 input.tar.gz
[2026-02-06 19:29:58] -rw-r--r-- 2 boinc boinc     15845 Feb  6 17:26 start_atlas.sh
[2026-02-06 19:29:58] drwxrwx--x 2 boinc boinc      4096 Feb  6 17:26 shared
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc         0 Feb  6 17:26 boinc_setup_complete
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc      6197 Feb  6 17:26 init_data.xml
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc         0 Feb  6 17:26 boinc_lockfile
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc      2541 Feb  6 17:26 pandaJob.out
[2026-02-06 19:29:58] -rw------- 1 boinc boinc   1009512 Feb  6 17:26 agis_schedconf.cvmfs.json
[2026-02-06 19:29:58] -rw------- 1 boinc boinc   1513088 Feb  6 17:26 agis_ddmendpoints.agis.ALL.json
[2026-02-06 19:29:58] -rw------- 1 boinc boinc       426 Feb  6 17:26 workernode_map.json
[2026-02-06 19:29:58] drwx------ 5 boinc boinc      4096 Feb  6 17:26 pilot3
[2026-02-06 19:29:58] -rw------- 1 boinc boinc 255154861 Feb  6 19:28 HITS.48431113._003152.pool.root.1
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc       530 Feb  6 19:28 boinc_task_state.xml
[2026-02-06 19:29:58] -rw------- 1 boinc boinc      1020 Feb  6 19:28 memory_monitor_summary.json
[2026-02-06 19:29:58] -rw------- 1 boinc boinc    274010 Feb  6 19:28 log.48431113._003152.job.log.tgz.1
[2026-02-06 19:29:58] -rw------- 1 boinc boinc      6305 Feb  6 19:28 heartbeat.json
[2026-02-06 19:29:58] -rw------- 1 boinc boinc        95 Feb  6 19:29 pilot_heartbeat.json
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc      8192 Feb  6 19:29 boinc_mmap_file
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc        27 Feb  6 19:29 wrapper_checkpoint.txt
[2026-02-06 19:29:58] -rw------- 1 boinc boinc      4820 Feb  6 19:29 pilotlog.txt
[2026-02-06 19:29:58] -rw------- 1 boinc boinc   1055551 Feb  6 19:29 log.48431113._003152.job.log.1
[2026-02-06 19:29:58] -rw------- 1 boinc boinc       357 Feb  6 19:29 output.list
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc       620 Feb  6 19:29 runtime_log
[2026-02-06 19:29:58] -rw------- 1 boinc boinc   1351680 Feb  6 19:29 result.tar.gz
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc      8896 Feb  6 19:29 runtime_log.err
[2026-02-06 19:29:58] -rw------- 1 boinc boinc       657 Feb  6 19:29 r9zKDmGcV88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6MYKDmFeP3Lo.diag
[2026-02-06 19:29:58] -rw-r--r-- 1 boinc boinc     12229 Feb  6 19:29 stderr.txt
[2026-02-06 19:29:58] HITS file was successfully produced:
[2026-02-06 19:29:58] -rw------- 1 boinc boinc 255154861 Feb  6 19:28 shared/HITS.pool.root.1
[2026-02-06 19:29:58]  *** Contents of shared directory: ***
[2026-02-06 19:29:58] total 883836
[2026-02-06 19:29:58] -rw-r--r-- 2 boinc boinc 647916744 Feb  6 17:26 ATLAS.root_0
[2026-02-06 19:29:58] -rw-r--r-- 2 boinc boinc    597951 Feb  6 17:26 input.tar.gz
[2026-02-06 19:29:58] -rw-r--r-- 2 boinc boinc     15845 Feb  6 17:26 start_atlas.sh
[2026-02-06 19:29:58] -rw------- 1 boinc boinc 255154861 Feb  6 19:28 HITS.pool.root.1
[2026-02-06 19:29:58] -rw------- 1 boinc boinc   1351680 Feb  6 19:29 result.tar.gz
19:29:59 (3024413): run_atlas exited; CPU time 21198.944666
19:29:59 (3024413): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN