Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:50:47 (2118539): wrapper (7.7.26015): starting
17:50:47 (2118539): wrapper: running run_atlas (--nthreads 2)
[2026-02-06 17:50:47] Arguments: --nthreads 2
[2026-02-06 17:50:47] Threads: 2
[2026-02-06 17:50:47] Checking for CVMFS
[2026-02-06 17:50:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 17:50:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 17:50:48] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 17:50:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 17:50:48] 2.9.2.0 2050517 707 55192 155952 1 50 33232713 36864000 0 130560 0 204346 99.973 32514 18815 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 17:50:48] CVMFS is ok
[2026-02-06 17:50:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 17:50:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 17:50:49] Further information can be found at the LHC@home message board.
[2026-02-06 17:50:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 17:50:49] Checking for apptainer binary...
[2026-02-06 17:50:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 17:50:49] Running /usr/bin/apptainer --version
[2026-02-06 17:50:49] apptainer version 1.4.1-1.1
[2026-02-06 17:50:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 17:50:49] atlasA229
[2026-02-06 17:50:49] apptainer works
[2026-02-06 17:50:49] Set ATHENA_PROC_NUMBER=2
[2026-02-06 17:50:49] Set ATHENA_CORE_NUMBER=2
[2026-02-06 17:50:49] Starting ATLAS job with PandaID=6996529660
[2026-02-06 17:50:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 19:42:22]  *** The last 200 lines of the pilot log: ***
[2026-02-06 19:42:22] 2026-02-06 18:41:36,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 19:42:22] 2026-02-06 18:41:36,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 19:42:22] 2026-02-06 18:41:36,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 19:42:22] 2026-02-06 18:41:36,683 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 19:42:22] 2026-02-06 18:41:36,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 19:42:22] 2026-02-06 18:41:36,683 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 19:42:22] 2026-02-06 18:41:36,683 | INFO     | job 6996529660 has completed (purged errors)
[2026-02-06 19:42:22] 2026-02-06 18:41:36,683 | INFO     | overall cleanup function is called
[2026-02-06 19:42:22] 2026-02-06 18:41:37,689 | INFO     | --- collectZombieJob: --- 10, [2126971]
[2026-02-06 19:42:22] 2026-02-06 18:41:37,689 | INFO     | zombie collector waiting for pid 2126971
[2026-02-06 19:42:22] 2026-02-06 18:41:37,689 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 19:42:22] 2026-02-06 18:41:37,689 | INFO     | collected zombie processes
[2026-02-06 19:42:22] 2026-02-06 18:41:37,689 | INFO     | will attempt to kill all subprocesses of pid=2126971
[2026-02-06 19:42:22] 2026-02-06 18:41:37,711 | INFO     | PID=2122564 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 19:42:22] 2026-02-06 18:41:37,728 | INFO     | process IDs to be killed: [2126971] (in reverse order)
[2026-02-06 19:42:22] 2026-02-06 18:41:37,750 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 19:42:22] 2026-02-06 18:41:37,750 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 19:42:22] 2026-02-06 18:41:37,751 | INFO     | did not find any defunct processes belonging to 2126971
[2026-02-06 19:42:22] 2026-02-06 18:41:37,752 | INFO     | did not find any defunct processes belonging to 2126971
[2026-02-06 19:42:22] 2026-02-06 18:41:37,752 | INFO     | ready for new job
[2026-02-06 19:42:22] 2026-02-06 18:41:37,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 19:42:22] 2026-02-06 18:41:37,752 | INFO     | **************************************
[2026-02-06 19:42:22] 2026-02-06 18:41:37,752 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 19:42:22] 2026-02-06 18:41:37,752 | INFO     | **************************************
[2026-02-06 19:42:22] 2026-02-06 18:41:37,752 | INFO     | 
[2026-02-06 19:42:22] 2026-02-06 18:41:37,753 | INFO     | architecture information:
[2026-02-06 19:42:22] 2026-02-06 18:41:37,753 | INFO     | executing command: cat /etc/os-release
[2026-02-06 19:42:22] 2026-02-06 18:41:37,762 | INFO     | cat /etc/os-release:
[2026-02-06 19:42:22] NAME="CentOS Linux"
[2026-02-06 19:42:22] VERSION="7 (Core)"
[2026-02-06 19:42:22] ID="centos"
[2026-02-06 19:42:22] ID_LIKE="rhel fedora"
[2026-02-06 19:42:22] VERSION_ID="7"
[2026-02-06 19:42:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 19:42:22] ANSI_COLOR="0;31"
[2026-02-06 19:42:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 19:42:22] HOME_URL="https://www.centos.org/"
[2026-02-06 19:42:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 19:42:22] 
[2026-02-06 19:42:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 19:42:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 19:42:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 19:42:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 19:42:22] 
[2026-02-06 19:42:22] 2026-02-06 18:41:37,762 | INFO     | **************************************
[2026-02-06 19:42:22] 2026-02-06 18:41:38,265 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 19:42:22] 2026-02-06 18:41:38,278 | INFO     | sufficient remaining disk space (325015568384 B)
[2026-02-06 19:42:22] 2026-02-06 18:41:38,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | INFO     | update_server=False
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | INFO     | aborting loop
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 19:42:22] 2026-02-06 18:41:38,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 19:42:22] 2026-02-06 18:41:38,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 19:42:22] 2026-02-06 18:41:39,284 | INFO     | [job] retrieve thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:39,285 | INFO     | [job] queue monitor thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:39,286 | INFO     | [job] job monitor thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:39,315 | INFO     | all data control threads have been joined
[2026-02-06 19:42:22] 2026-02-06 18:41:39,477 | INFO     | all job control threads have been joined
[2026-02-06 19:42:22] 2026-02-06 18:41:39,497 | INFO     | [payload] validate_post thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:39,677 | INFO     | all payload control threads have been joined
[2026-02-06 19:42:22] 2026-02-06 18:41:39,848 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:39,849 | INFO     | [job] validate thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:40,120 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:40,176 | INFO     | [data] copytool_in thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:40,257 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:40,290 | INFO     | [data] copytool_out thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:40,321 | INFO     | [data] control thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:40,478 | INFO     | [job] control thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:40,602 | INFO     | [payload] failed_post thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:40,683 | INFO     | [payload] control thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:41,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 19:42:22] 2026-02-06 18:41:45,415 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:41:48,595 | INFO     | job.realtimelogging is not enabled
[2026-02-06 19:42:22] 2026-02-06 18:41:49,598 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 19:42:22] 2026-02-06 18:42:17,511 | INFO     | [monitor] cgroup control has ended
[2026-02-06 19:42:22] 2026-02-06 18:42:17,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310763857728)>', '<ExcThread(monitor, started 140310097143552)>']
[2026-02-06 19:42:22] 2026-02-06 18:42:18,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 19:42:22] 2026-02-06 18:42:18,491 | INFO     | [monitor] control thread has ended
[2026-02-06 19:42:22] 2026-02-06 18:42:22,691 | INFO     | all workflow threads have been joined
[2026-02-06 19:42:22] 2026-02-06 18:42:22,692 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 19:42:22] 2026-02-06 18:42:22,692 | INFO     | traces error code: 0
[2026-02-06 19:42:22] 2026-02-06 18:42:22,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 19:42:22] 2026-02-06 18:42:22,737 [wrapper] ==== pilot stdout END ====
[2026-02-06 19:42:22] 2026-02-06 18:42:22,739 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 19:42:22] 2026-02-06 18:42:22,742 [wrapper] pilotpid: 2122564
[2026-02-06 19:42:22] 2026-02-06 18:42:22,744 [wrapper] Pilot exit status: 0
[2026-02-06 19:42:22] 2026-02-06 18:42:22,750 [wrapper] pandaids: 6996529660
[2026-02-06 19:42:22] 2026-02-06 18:42:22,764 [wrapper] cleanup supervisor_pilot 2131845 2122565
[2026-02-06 19:42:22] 2026-02-06 18:42:22,766 [wrapper] Test setup, not cleaning
[2026-02-06 19:42:22] 2026-02-06 18:42:22,768 [wrapper] apfmon messages muted
[2026-02-06 19:42:22] 2026-02-06 18:42:22,771 [wrapper] ==== wrapper stdout END ====
[2026-02-06 19:42:22] 2026-02-06 18:42:22,773 [wrapper] ==== wrapper stderr END ====
[2026-02-06 19:42:22]  *** Error codes and diagnostics ***
[2026-02-06 19:42:22]     "exeErrorCode": 0,
[2026-02-06 19:42:22]     "exeErrorDiag": "",
[2026-02-06 19:42:22]     "pilotErrorCode": 0,
[2026-02-06 19:42:22]     "pilotErrorDiag": "",
[2026-02-06 19:42:22]  *** Listing of results directory ***
[2026-02-06 19:42:22] total 660268
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc    584627 Feb  6 08:38 pilot3.tar.gz
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc      5111 Feb  6 08:39 queuedata.json
[2026-02-06 19:42:22] -rwx------ 1 boinc boinc     36322 Feb  6 08:39 runpilot2-wrapper.sh
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc       100 Feb  6 17:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 19:42:22] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 17:50 run_atlas
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc       105 Feb  6 17:50 job.xml
[2026-02-06 19:42:22] -rw-r--r-- 2 boinc boinc 488960897 Feb  6 17:50 EVNT.48310747._000016.pool.root.1
[2026-02-06 19:42:22] -rw-r--r-- 2 boinc boinc    597953 Feb  6 17:50 input.tar.gz
[2026-02-06 19:42:22] -rw-r--r-- 2 boinc boinc     15845 Feb  6 17:50 start_atlas.sh
[2026-02-06 19:42:22] drwxrwx--x 2 boinc boinc      4096 Feb  6 17:50 shared
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc         0 Feb  6 17:50 boinc_setup_complete
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc      6206 Feb  6 17:50 init_data.xml
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc         0 Feb  6 17:50 boinc_lockfile
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc      2519 Feb  6 17:50 pandaJob.out
[2026-02-06 19:42:22] -rw------- 1 boinc boinc   1009512 Feb  6 17:51 agis_schedconf.cvmfs.json
[2026-02-06 19:42:22] -rw------- 1 boinc boinc   1513088 Feb  6 17:51 agis_ddmendpoints.agis.ALL.json
[2026-02-06 19:42:22] -rw------- 1 boinc boinc       429 Feb  6 17:51 workernode_map.json
[2026-02-06 19:42:22] drwx------ 5 boinc boinc      4096 Feb  6 17:51 pilot3
[2026-02-06 19:42:22] -rw------- 1 boinc boinc 180807926 Feb  6 19:41 HITS.48310749._004934.pool.root.1
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc       530 Feb  6 19:41 boinc_task_state.xml
[2026-02-06 19:42:22] -rw------- 1 boinc boinc      1015 Feb  6 19:41 memory_monitor_summary.json
[2026-02-06 19:42:22] -rw------- 1 boinc boinc        95 Feb  6 19:41 pilot_heartbeat.json
[2026-02-06 19:42:22] -rw------- 1 boinc boinc    249799 Feb  6 19:41 log.48310749._004934.job.log.tgz.1
[2026-02-06 19:42:22] -rw------- 1 boinc boinc      6299 Feb  6 19:41 heartbeat.json
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc      8192 Feb  6 19:42 boinc_mmap_file
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc        27 Feb  6 19:42 wrapper_checkpoint.txt
[2026-02-06 19:42:22] -rw------- 1 boinc boinc      4624 Feb  6 19:42 pilotlog.txt
[2026-02-06 19:42:22] -rw------- 1 boinc boinc    957751 Feb  6 19:42 log.48310749._004934.job.log.1
[2026-02-06 19:42:22] -rw------- 1 boinc boinc       357 Feb  6 19:42 output.list
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc       620 Feb  6 19:42 runtime_log
[2026-02-06 19:42:22] -rw------- 1 boinc boinc   1228800 Feb  6 19:42 result.tar.gz
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc      8911 Feb  6 19:42 runtime_log.err
[2026-02-06 19:42:22] -rw------- 1 boinc boinc       660 Feb  6 19:42 Y99MDm2bV88n9Rq4apOajLDm4fhM0noT9bVooX4SDmivXKDmBVDJUm.diag
[2026-02-06 19:42:22] -rw-r--r-- 1 boinc boinc     11654 Feb  6 19:42 stderr.txt
[2026-02-06 19:42:22] HITS file was successfully produced:
[2026-02-06 19:42:22] -rw------- 1 boinc boinc 180807926 Feb  6 19:41 shared/HITS.pool.root.1
[2026-02-06 19:42:22]  *** Contents of shared directory: ***
[2026-02-06 19:42:22] total 655884
[2026-02-06 19:42:22] -rw-r--r-- 2 boinc boinc 488960897 Feb  6 17:50 ATLAS.root_0
[2026-02-06 19:42:22] -rw-r--r-- 2 boinc boinc    597953 Feb  6 17:50 input.tar.gz
[2026-02-06 19:42:22] -rw-r--r-- 2 boinc boinc     15845 Feb  6 17:50 start_atlas.sh
[2026-02-06 19:42:22] -rw------- 1 boinc boinc 180807926 Feb  6 19:41 HITS.pool.root.1
[2026-02-06 19:42:22] -rw------- 1 boinc boinc   1228800 Feb  6 19:42 result.tar.gz
19:42:24 (2118539): run_atlas exited; CPU time 12841.002430
19:42:24 (2118539): called boinc_finish(0)

</stderr_txt>
]]>

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