Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:48:54 (2105092): wrapper (7.7.26015): starting
15:48:54 (2105092): wrapper: running run_atlas (--nthreads 2)
[2026-02-06 15:48:54] Arguments: --nthreads 2
[2026-02-06 15:48:54] Threads: 2
[2026-02-06 15:48:54] Checking for CVMFS
[2026-02-06 15:48:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 15:48:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 15:48:54] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 15:48:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 15:48:54] 2.9.2.0 2050517 585 54548 155948 3 50 33217642 36864000 0 130560 0 163787 99.971 27332 17946 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 15:48:54] CVMFS is ok
[2026-02-06 15:48:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 15:48:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 15:48:54] Further information can be found at the LHC@home message board.
[2026-02-06 15:48:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 15:48:54] Checking for apptainer binary...
[2026-02-06 15:48:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 15:48:54] Running /usr/bin/apptainer --version
[2026-02-06 15:48:54] apptainer version 1.4.1-1.1
[2026-02-06 15:48:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 15:48:54] atlasA229
[2026-02-06 15:48:54] apptainer works
[2026-02-06 15:48:54] Set ATHENA_PROC_NUMBER=2
[2026-02-06 15:48:54] Set ATHENA_CORE_NUMBER=2
[2026-02-06 15:48:54] Starting ATLAS job with PandaID=6996409054
[2026-02-06 15:48:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 17:50:43]  *** The last 200 lines of the pilot log: ***
[2026-02-06 17:50:43] 2026-02-06 16:50:22,874 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | job 6996409054 has completed (purged errors)
[2026-02-06 17:50:43] 2026-02-06 16:50:22,875 | INFO     | overall cleanup function is called
[2026-02-06 17:50:43] 2026-02-06 16:50:23,652 | INFO     | PID=2109119 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 17:50:43] 2026-02-06 16:50:23,881 | INFO     | --- collectZombieJob: --- 10, [2113526]
[2026-02-06 17:50:43] 2026-02-06 16:50:23,881 | INFO     | zombie collector waiting for pid 2113526
[2026-02-06 17:50:43] 2026-02-06 16:50:23,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 17:50:43] 2026-02-06 16:50:23,881 | INFO     | collected zombie processes
[2026-02-06 17:50:43] 2026-02-06 16:50:23,881 | INFO     | will attempt to kill all subprocesses of pid=2113526
[2026-02-06 17:50:43] 2026-02-06 16:50:23,914 | INFO     | process IDs to be killed: [2113526] (in reverse order)
[2026-02-06 17:50:43] 2026-02-06 16:50:23,939 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 17:50:43] 2026-02-06 16:50:23,940 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 17:50:43] 2026-02-06 16:50:23,940 | INFO     | did not find any defunct processes belonging to 2113526
[2026-02-06 17:50:43] 2026-02-06 16:50:23,941 | INFO     | did not find any defunct processes belonging to 2113526
[2026-02-06 17:50:43] 2026-02-06 16:50:23,941 | INFO     | ready for new job
[2026-02-06 17:50:43] 2026-02-06 16:50:23,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 17:50:43] 2026-02-06 16:50:23,942 | INFO     | **************************************
[2026-02-06 17:50:43] 2026-02-06 16:50:23,942 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 17:50:43] 2026-02-06 16:50:23,942 | INFO     | **************************************
[2026-02-06 17:50:43] 2026-02-06 16:50:23,942 | INFO     | 
[2026-02-06 17:50:43] 2026-02-06 16:50:23,942 | INFO     | architecture information:
[2026-02-06 17:50:43] 2026-02-06 16:50:23,942 | INFO     | executing command: cat /etc/os-release
[2026-02-06 17:50:43] 2026-02-06 16:50:23,953 | INFO     | cat /etc/os-release:
[2026-02-06 17:50:43] NAME="CentOS Linux"
[2026-02-06 17:50:43] VERSION="7 (Core)"
[2026-02-06 17:50:43] ID="centos"
[2026-02-06 17:50:43] ID_LIKE="rhel fedora"
[2026-02-06 17:50:43] VERSION_ID="7"
[2026-02-06 17:50:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 17:50:43] ANSI_COLOR="0;31"
[2026-02-06 17:50:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 17:50:43] HOME_URL="https://www.centos.org/"
[2026-02-06 17:50:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 17:50:43] 
[2026-02-06 17:50:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 17:50:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 17:50:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 17:50:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 17:50:43] 
[2026-02-06 17:50:43] 2026-02-06 16:50:23,953 | INFO     | **************************************
[2026-02-06 17:50:43] 2026-02-06 16:50:24,456 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 17:50:43] 2026-02-06 16:50:24,468 | INFO     | sufficient remaining disk space (325023956992 B)
[2026-02-06 17:50:43] 2026-02-06 16:50:24,468 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | INFO     | update_server=False
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | INFO     | aborting loop
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 17:50:43] 2026-02-06 16:50:24,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 17:50:43] 2026-02-06 16:50:24,515 | INFO     | [monitor] cgroup control has ended
[2026-02-06 17:50:43] 2026-02-06 16:50:24,700 | INFO     | all payload control threads have been joined
[2026-02-06 17:50:43] 2026-02-06 16:50:24,804 | INFO     | all job control threads have been joined
[2026-02-06 17:50:43] 2026-02-06 16:50:25,255 | INFO     | all data control threads have been joined
[2026-02-06 17:50:43] 2026-02-06 16:50:25,470 | INFO     | [job] job monitor thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:25,474 | INFO     | [job] retrieve thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:25,474 | INFO     | [job] queue monitor thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:25,513 | INFO     | [payload] failed_post thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:25,706 | INFO     | [payload] control thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:25,810 | INFO     | [job] control thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:26,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 17:50:43] 2026-02-06 16:50:26,101 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:26,259 | INFO     | [data] control thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:26,475 | INFO     | [data] copytool_out thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:26,623 | INFO     | [payload] validate_post thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:26,648 | INFO     | [job] validate thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:26,819 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:26,917 | INFO     | [data] copytool_in thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:26,955 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:30,009 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:35,200 | INFO     | job.realtimelogging is not enabled
[2026-02-06 17:50:43] 2026-02-06 16:50:36,206 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 17:50:43] 2026-02-06 16:50:38,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762806634304)>', '<ExcThread(monitor, started 139762287486720)>']
[2026-02-06 17:50:43] 2026-02-06 16:50:38,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 17:50:43] 2026-02-06 16:50:38,543 | INFO     | [monitor] control thread has ended
[2026-02-06 17:50:43] 2026-02-06 16:50:43,212 | INFO     | all workflow threads have been joined
[2026-02-06 17:50:43] 2026-02-06 16:50:43,213 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 17:50:43] 2026-02-06 16:50:43,213 | INFO     | traces error code: 0
[2026-02-06 17:50:43] 2026-02-06 16:50:43,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 17:50:43] 2026-02-06 16:50:43,256 [wrapper] ==== pilot stdout END ====
[2026-02-06 17:50:43] 2026-02-06 16:50:43,259 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 17:50:43] 2026-02-06 16:50:43,261 [wrapper] pilotpid: 2109119
[2026-02-06 17:50:43] 2026-02-06 16:50:43,264 [wrapper] Pilot exit status: 0
[2026-02-06 17:50:43] 2026-02-06 16:50:43,270 [wrapper] pandaids: 6996409054
[2026-02-06 17:50:43] 2026-02-06 16:50:43,282 [wrapper] cleanup supervisor_pilot 2118428 2109120
[2026-02-06 17:50:43] 2026-02-06 16:50:43,285 [wrapper] Test setup, not cleaning
[2026-02-06 17:50:43] 2026-02-06 16:50:43,287 [wrapper] apfmon messages muted
[2026-02-06 17:50:43] 2026-02-06 16:50:43,288 [wrapper] ==== wrapper stdout END ====
[2026-02-06 17:50:43] 2026-02-06 16:50:43,290 [wrapper] ==== wrapper stderr END ====
[2026-02-06 17:50:43]  *** Error codes and diagnostics ***
[2026-02-06 17:50:43]     "exeErrorCode": 0,
[2026-02-06 17:50:43]     "exeErrorDiag": "",
[2026-02-06 17:50:43]     "pilotErrorCode": 0,
[2026-02-06 17:50:43]     "pilotErrorDiag": "",
[2026-02-06 17:50:43]  *** Listing of results directory ***
[2026-02-06 17:50:43] total 664344
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc    584627 Feb  6 06:55 pilot3.tar.gz
[2026-02-06 17:50:43] -rwx------ 1 boinc boinc     36322 Feb  6 06:58 runpilot2-wrapper.sh
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc      5111 Feb  6 07:01 queuedata.json
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc       100 Feb  6 15:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 17:50:43] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 15:48 run_atlas
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc       105 Feb  6 15:48 job.xml
[2026-02-06 17:50:43] -rw-r--r-- 2 boinc boinc 495481446 Feb  6 15:48 EVNT.48442027._000035.pool.root.1
[2026-02-06 17:50:43] -rw-r--r-- 2 boinc boinc    597951 Feb  6 15:48 input.tar.gz
[2026-02-06 17:50:43] -rw-r--r-- 2 boinc boinc     15845 Feb  6 15:48 start_atlas.sh
[2026-02-06 17:50:43] drwxrwx--x 2 boinc boinc      4096 Feb  6 15:48 shared
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc         0 Feb  6 15:48 boinc_setup_complete
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc      6206 Feb  6 15:48 init_data.xml
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc         0 Feb  6 15:48 boinc_lockfile
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc      2527 Feb  6 15:48 pandaJob.out
[2026-02-06 17:50:43] -rw------- 1 boinc boinc   1009504 Feb  6 15:49 agis_schedconf.cvmfs.json
[2026-02-06 17:50:43] -rw------- 1 boinc boinc   1513144 Feb  6 15:49 agis_ddmendpoints.agis.ALL.json
[2026-02-06 17:50:43] -rw------- 1 boinc boinc       428 Feb  6 15:49 workernode_map.json
[2026-02-06 17:50:43] drwx------ 5 boinc boinc      4096 Feb  6 15:49 pilot3
[2026-02-06 17:50:43] -rw------- 1 boinc boinc        95 Feb  6 17:49 pilot_heartbeat.json
[2026-02-06 17:50:43] -rw------- 1 boinc boinc 178210643 Feb  6 17:50 HITS.48442031._001872.pool.root.1
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc       531 Feb  6 17:50 boinc_task_state.xml
[2026-02-06 17:50:43] -rw------- 1 boinc boinc      1017 Feb  6 17:50 memory_monitor_summary.json
[2026-02-06 17:50:43] -rw------- 1 boinc boinc    282607 Feb  6 17:50 log.48442031._001872.job.log.tgz.1
[2026-02-06 17:50:43] -rw------- 1 boinc boinc      6312 Feb  6 17:50 heartbeat.json
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc      8192 Feb  6 17:50 boinc_mmap_file
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc        27 Feb  6 17:50 wrapper_checkpoint.txt
[2026-02-06 17:50:43] -rw------- 1 boinc boinc      4624 Feb  6 17:50 pilotlog.txt
[2026-02-06 17:50:43] -rw------- 1 boinc boinc   1047279 Feb  6 17:50 log.48442031._001872.job.log.1
[2026-02-06 17:50:43] -rw------- 1 boinc boinc       357 Feb  6 17:50 output.list
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc       620 Feb  6 17:50 runtime_log
[2026-02-06 17:50:43] -rw------- 1 boinc boinc   1351680 Feb  6 17:50 result.tar.gz
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc      8911 Feb  6 17:50 runtime_log.err
[2026-02-06 17:50:43] -rw------- 1 boinc boinc       660 Feb  6 17:50 4B0KDml2T88n9Rq4apOajLDm4fhM0noT9bVooX4SDmqtXKDm7iJXKo.diag
[2026-02-06 17:50:43] -rw-r--r-- 1 boinc boinc     12377 Feb  6 17:50 stderr.txt
[2026-02-06 17:50:43] HITS file was successfully produced:
[2026-02-06 17:50:43] -rw------- 1 boinc boinc 178210643 Feb  6 17:50 shared/HITS.pool.root.1
[2026-02-06 17:50:43]  *** Contents of shared directory: ***
[2026-02-06 17:50:43] total 659836
[2026-02-06 17:50:43] -rw-r--r-- 2 boinc boinc 495481446 Feb  6 15:48 ATLAS.root_0
[2026-02-06 17:50:43] -rw-r--r-- 2 boinc boinc    597951 Feb  6 15:48 input.tar.gz
[2026-02-06 17:50:43] -rw-r--r-- 2 boinc boinc     15845 Feb  6 15:48 start_atlas.sh
[2026-02-06 17:50:43] -rw------- 1 boinc boinc 178210643 Feb  6 17:50 HITS.pool.root.1
[2026-02-06 17:50:43] -rw------- 1 boinc boinc   1351680 Feb  6 17:50 result.tar.gz
17:50:44 (2105092): run_atlas exited; CPU time 14132.612830
17:50:44 (2105092): called boinc_finish(0)

</stderr_txt>
]]>

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