Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:08:31 (1682624): wrapper (7.7.26015): starting
14:08:31 (1682624): wrapper: running run_atlas (--nthreads 3)
[2026-02-06 14:08:31] Arguments: --nthreads 3
[2026-02-06 14:08:31] Threads: 3
[2026-02-06 14:08:31] Checking for CVMFS
[2026-02-06 14:08:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 14:08:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 14:08:32] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 14:08:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 14:08:32] 2.9.2.0 1622115 339 58432 155946 1 49 25780339 36864001 0 130560 0 159851 99.974 16597 23710 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 14:08:32] CVMFS is ok
[2026-02-06 14:08:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 14:08:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 14:08:32] Further information can be found at the LHC@home message board.
[2026-02-06 14:08:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 14:08:32] Checking for apptainer binary...
[2026-02-06 14:08:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 14:08:32] Running /usr/bin/apptainer --version
[2026-02-06 14:08:32] apptainer version 1.4.1-1.1
[2026-02-06 14:08:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 14:08:32] magicA246a
[2026-02-06 14:08:32] apptainer works
[2026-02-06 14:08:32] Set ATHENA_PROC_NUMBER=3
[2026-02-06 14:08:32] Set ATHENA_CORE_NUMBER=3
[2026-02-06 14:08:32] Starting ATLAS job with PandaID=6996408890
[2026-02-06 14:08:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 16:01:54]  *** The last 200 lines of the pilot log: ***
[2026-02-06 16:01:54] 2026-02-06 15:01:20,864 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 16:01:54] 2026-02-06 15:01:20,865 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 16:01:54] 2026-02-06 15:01:20,865 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 16:01:54] 2026-02-06 15:01:20,865 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 16:01:54] 2026-02-06 15:01:20,865 | INFO     | job 6996408890 has completed (purged errors)
[2026-02-06 16:01:54] 2026-02-06 15:01:20,865 | INFO     | overall cleanup function is called
[2026-02-06 16:01:54] 2026-02-06 15:01:21,871 | INFO     | --- collectZombieJob: --- 10, [1691088]
[2026-02-06 16:01:54] 2026-02-06 15:01:21,872 | INFO     | zombie collector waiting for pid 1691088
[2026-02-06 16:01:54] 2026-02-06 15:01:21,872 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 16:01:54] 2026-02-06 15:01:21,872 | INFO     | collected zombie processes
[2026-02-06 16:01:54] 2026-02-06 15:01:21,872 | INFO     | will attempt to kill all subprocesses of pid=1691088
[2026-02-06 16:01:54] 2026-02-06 15:01:21,930 | INFO     | process IDs to be killed: [1691088] (in reverse order)
[2026-02-06 16:01:54] 2026-02-06 15:01:21,959 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 16:01:54] 2026-02-06 15:01:21,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 16:01:54] 2026-02-06 15:01:21,961 | INFO     | did not find any defunct processes belonging to 1691088
[2026-02-06 16:01:54] 2026-02-06 15:01:21,963 | INFO     | did not find any defunct processes belonging to 1691088
[2026-02-06 16:01:54] 2026-02-06 15:01:21,963 | INFO     | ready for new job
[2026-02-06 16:01:54] 2026-02-06 15:01:21,963 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 16:01:54] 2026-02-06 15:01:21,963 | INFO     | **************************************
[2026-02-06 16:01:54] 2026-02-06 15:01:21,964 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 16:01:54] 2026-02-06 15:01:21,964 | INFO     | **************************************
[2026-02-06 16:01:54] 2026-02-06 15:01:21,964 | INFO     | 
[2026-02-06 16:01:54] 2026-02-06 15:01:21,964 | INFO     | architecture information:
[2026-02-06 16:01:54] 2026-02-06 15:01:21,964 | INFO     | executing command: cat /etc/os-release
[2026-02-06 16:01:54] 2026-02-06 15:01:21,973 | INFO     | cat /etc/os-release:
[2026-02-06 16:01:54] NAME="CentOS Linux"
[2026-02-06 16:01:54] VERSION="7 (Core)"
[2026-02-06 16:01:54] ID="centos"
[2026-02-06 16:01:54] ID_LIKE="rhel fedora"
[2026-02-06 16:01:54] VERSION_ID="7"
[2026-02-06 16:01:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 16:01:54] ANSI_COLOR="0;31"
[2026-02-06 16:01:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 16:01:54] HOME_URL="https://www.centos.org/"
[2026-02-06 16:01:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 16:01:54] 
[2026-02-06 16:01:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 16:01:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 16:01:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 16:01:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 16:01:54] 
[2026-02-06 16:01:54] 2026-02-06 15:01:21,973 | INFO     | **************************************
[2026-02-06 16:01:54] 2026-02-06 15:01:22,476 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 16:01:54] 2026-02-06 15:01:22,488 | INFO     | sufficient remaining disk space (276984496128 B)
[2026-02-06 16:01:54] 2026-02-06 15:01:22,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 16:01:54] 2026-02-06 15:01:22,488 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 16:01:54] 2026-02-06 15:01:22,488 | INFO     | update_server=False
[2026-02-06 16:01:54] 2026-02-06 15:01:22,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 16:01:54] 2026-02-06 15:01:22,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 16:01:54] 2026-02-06 15:01:22,561 | INFO     | all data control threads have been joined
[2026-02-06 16:01:54] 2026-02-06 15:01:22,764 | INFO     | all job control threads have been joined
[2026-02-06 16:01:54] 2026-02-06 15:01:23,019 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 16:01:54] 2026-02-06 15:01:23,020 | INFO     | aborting loop
[2026-02-06 16:01:54] 2026-02-06 15:01:23,493 | INFO     | [job] retrieve thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:23,494 | INFO     | [job] queue monitor thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:23,527 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:23,567 | INFO     | [data] control thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:23,770 | INFO     | [job] control thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:23,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 16:01:54] 2026-02-06 15:01:23,992 | INFO     | all payload control threads have been joined
[2026-02-06 16:01:54] 2026-02-06 15:01:23,992 | INFO     | [payload] failed_post thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:24,025 | INFO     | [job] job monitor thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:24,245 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 16:01:54] 2026-02-06 15:01:24,269 | INFO     | [job] validate thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:24,356 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:24,372 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:24,523 | INFO     | [data] copytool_in thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:24,564 | INFO     | [payload] validate_post thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:24,998 | INFO     | [payload] control thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:25,890 | INFO     | [data] copytool_out thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:28,251 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:33,019 | INFO     | job.realtimelogging is not enabled
[2026-02-06 16:01:54] 2026-02-06 15:01:34,024 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 16:01:54] 2026-02-06 15:01:48,722 | INFO     | [monitor] cgroup control has ended
[2026-02-06 16:01:54] 2026-02-06 15:01:49,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140057198929728)>', '<ExcThread(monitor, started 140056694073088)>']
[2026-02-06 16:01:54] 2026-02-06 15:01:51,000 | INFO     | 6762s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-06 16:01:54] 2026-02-06 15:01:52,077 | INFO     | PID=1686663 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 16:01:54] 2026-02-06 15:01:52,078 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 16:01:54] 2026-02-06 15:01:52,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 16:01:54] 2026-02-06 15:01:52,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 16:01:54] 2026-02-06 15:01:52,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 16:01:54] 2026-02-06 15:01:52,078 | INFO     | [monitor] control thread has ended
[2026-02-06 16:01:54] 2026-02-06 15:01:54,237 | INFO     | all workflow threads have been joined
[2026-02-06 16:01:54] 2026-02-06 15:01:54,238 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 16:01:54] 2026-02-06 15:01:54,238 | INFO     | traces error code: 0
[2026-02-06 16:01:54] 2026-02-06 15:01:54,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 16:01:54] 2026-02-06 15:01:54,290 [wrapper] ==== pilot stdout END ====
[2026-02-06 16:01:54] 2026-02-06 15:01:54,292 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 16:01:54] 2026-02-06 15:01:54,295 [wrapper] pilotpid: 1686663
[2026-02-06 16:01:54] 2026-02-06 15:01:54,297 [wrapper] Pilot exit status: 0
[2026-02-06 16:01:54] 2026-02-06 15:01:54,304 [wrapper] pandaids: 6996408890
[2026-02-06 16:01:54] 2026-02-06 15:01:54,323 [wrapper] cleanup supervisor_pilot 1698789 1686664
[2026-02-06 16:01:54] 2026-02-06 15:01:54,326 [wrapper] Test setup, not cleaning
[2026-02-06 16:01:54] 2026-02-06 15:01:54,328 [wrapper] apfmon messages muted
[2026-02-06 16:01:54] 2026-02-06 15:01:54,331 [wrapper] ==== wrapper stdout END ====
[2026-02-06 16:01:54] 2026-02-06 15:01:54,333 [wrapper] ==== wrapper stderr END ====
[2026-02-06 16:01:54]  *** Error codes and diagnostics ***
[2026-02-06 16:01:54]     "exeErrorCode": 0,
[2026-02-06 16:01:54]     "exeErrorDiag": "",
[2026-02-06 16:01:54]     "pilotErrorCode": 0,
[2026-02-06 16:01:54]     "pilotErrorDiag": "",
[2026-02-06 16:01:54]  *** Listing of results directory ***
[2026-02-06 16:01:54] total 896116
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc    584627 Feb  6 06:55 pilot3.tar.gz
[2026-02-06 16:01:54] -rwx------ 1 boinc boinc     36322 Feb  6 06:58 runpilot2-wrapper.sh
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc      5111 Feb  6 07:01 queuedata.json
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc       100 Feb  6 14:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 16:01:54] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 14:08 run_atlas
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc       105 Feb  6 14:08 job.xml
[2026-02-06 16:01:54] -rw-r--r-- 2 boinc boinc 652764807 Feb  6 14:08 EVNT.48431111._000055.pool.root.1
[2026-02-06 16:01:54] -rw-r--r-- 2 boinc boinc    597960 Feb  6 14:08 input.tar.gz
[2026-02-06 16:01:54] -rw-r--r-- 2 boinc boinc     15845 Feb  6 14:08 start_atlas.sh
[2026-02-06 16:01:54] drwxrwx--x 2 boinc boinc      4096 Feb  6 14:08 shared
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc         0 Feb  6 14:08 boinc_setup_complete
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc      6447 Feb  6 14:08 init_data.xml
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc         0 Feb  6 14:08 boinc_lockfile
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc      2545 Feb  6 14:08 pandaJob.out
[2026-02-06 16:01:54] -rw------- 1 boinc boinc   1009512 Feb  6 14:08 agis_schedconf.cvmfs.json
[2026-02-06 16:01:54] -rw------- 1 boinc boinc   1513144 Feb  6 14:08 agis_ddmendpoints.agis.ALL.json
[2026-02-06 16:01:54] -rw------- 1 boinc boinc       428 Feb  6 14:08 workernode_map.json
[2026-02-06 16:01:54] drwx------ 5 boinc boinc      4096 Feb  6 14:08 pilot3
[2026-02-06 16:01:54] -rw------- 1 boinc boinc 258359917 Feb  6 16:00 HITS.48431113._002739.pool.root.1
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc       530 Feb  6 16:01 boinc_task_state.xml
[2026-02-06 16:01:54] -rw------- 1 boinc boinc      1019 Feb  6 16:01 memory_monitor_summary.json
[2026-02-06 16:01:54] -rw------- 1 boinc boinc    308765 Feb  6 16:01 log.48431113._002739.job.log.tgz.1
[2026-02-06 16:01:54] -rw------- 1 boinc boinc        95 Feb  6 16:01 pilot_heartbeat.json
[2026-02-06 16:01:54] -rw------- 1 boinc boinc      6309 Feb  6 16:01 heartbeat.json
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc        27 Feb  6 16:01 wrapper_checkpoint.txt
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc      8192 Feb  6 16:01 boinc_mmap_file
[2026-02-06 16:01:54] -rw------- 1 boinc boinc      4935 Feb  6 16:01 pilotlog.txt
[2026-02-06 16:01:54] -rw------- 1 boinc boinc    974276 Feb  6 16:01 log.48431113._002739.job.log.1
[2026-02-06 16:01:54] -rw------- 1 boinc boinc       357 Feb  6 16:01 output.list
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc       620 Feb  6 16:01 runtime_log
[2026-02-06 16:01:54] -rw------- 1 boinc boinc   1300480 Feb  6 16:01 result.tar.gz
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc      8916 Feb  6 16:01 runtime_log.err
[2026-02-06 16:01:54] -rw------- 1 boinc boinc       661 Feb  6 16:01 7j5MDmj2T88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJHYKDmLcTPTn.diag
[2026-02-06 16:01:54] -rw-r--r-- 1 boinc boinc     11442 Feb  6 16:01 stderr.txt
[2026-02-06 16:01:54] HITS file was successfully produced:
[2026-02-06 16:01:54] -rw------- 1 boinc boinc 258359917 Feb  6 16:00 shared/HITS.pool.root.1
[2026-02-06 16:01:54]  *** Contents of shared directory: ***
[2026-02-06 16:01:54] total 891656
[2026-02-06 16:01:54] -rw-r--r-- 2 boinc boinc 652764807 Feb  6 14:08 ATLAS.root_0
[2026-02-06 16:01:54] -rw-r--r-- 2 boinc boinc    597960 Feb  6 14:08 input.tar.gz
[2026-02-06 16:01:54] -rw-r--r-- 2 boinc boinc     15845 Feb  6 14:08 start_atlas.sh
[2026-02-06 16:01:54] -rw------- 1 boinc boinc 258359917 Feb  6 16:00 HITS.pool.root.1
[2026-02-06 16:01:54] -rw------- 1 boinc boinc   1300480 Feb  6 16:01 result.tar.gz
16:01:55 (1682624): run_atlas exited; CPU time 19502.754134
16:01:55 (1682624): called boinc_finish(0)

</stderr_txt>
]]>

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