Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:41:51 (472414): wrapper (7.7.26015): starting
16:41:51 (472414): wrapper: running run_atlas (--nthreads 4)
[2026-02-06 16:41:51] Arguments: --nthreads 4
[2026-02-06 16:41:51] Threads: 4
[2026-02-06 16:41:51] Checking for CVMFS
[2026-02-06 16:41:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 16:41:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 16:41:51] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 16:41:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 16:41:51] 2.11.0.0 4102638 596 75280 155955 0 188 2603942 4096000 6411 130560 0 1724406 99.996 27681 1140 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-06 16:41:51] CVMFS is ok
[2026-02-06 16:41:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 16:41:51] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-06 16:41:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-06 16:41:51] Further information can be found at the LHC@home message board.
[2026-02-06 16:41:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 16:41:51] Checking for apptainer binary...
[2026-02-06 16:41:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 16:41:51] Running /usr/bin/apptainer --version
[2026-02-06 16:41:51] apptainer version 1.4.5
[2026-02-06 16:41:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 16:41:51] x32-linux2
[2026-02-06 16:41:51] apptainer works
[2026-02-06 16:41:51] Set ATHENA_PROC_NUMBER=4
[2026-02-06 16:41:51] Set ATHENA_CORE_NUMBER=4
[2026-02-06 16:41:51] Starting ATLAS job with PandaID=6996408476
[2026-02-06 16:41:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 19:26:24]  *** The last 200 lines of the pilot log: ***
[2026-02-06 19:26:24] 2026-02-07 00:25:41,204 | INFO     | mean y: 2349933.2756410255
[2026-02-06 19:26:24] 2026-02-07 00:25:41,204 | INFO     | intersect: -3402333192.9540744
[2026-02-06 19:26:24] 2026-02-07 00:25:41,204 | INFO     | chi2: 0.00339081929542217
[2026-02-06 19:26:24] 2026-02-07 00:25:41,204 | INFO     | current chi2=0.00339081929542217 (change=99.68662161686439 %)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,204 | INFO     | sum of square deviations: 1067554900.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,205 | INFO     | sum of deviations: 2901500807.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,205 | INFO     | mean x: 1770419325.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,205 | INFO     | mean y: 2349040.0927152317
[2026-02-06 19:26:24] 2026-02-07 00:25:41,205 | INFO     | intersect: -4809462605.580866
[2026-02-06 19:26:24] 2026-02-07 00:25:41,205 | INFO     | chi2: 0.0019724781424935757
[2026-02-06 19:26:24] 2026-02-07 00:25:41,205 | INFO     | current chi2=0.0019724781424935757 (change=41.828862860472945 %)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,205 | INFO     | sum of square deviations: 964976232.5
[2026-02-06 19:26:24] 2026-02-07 00:25:41,206 | INFO     | sum of deviations: 2839125897.4999995
[2026-02-06 19:26:24] 2026-02-07 00:25:41,206 | INFO     | mean x: 1770419477.5
[2026-02-06 19:26:24] 2026-02-07 00:25:41,206 | INFO     | mean y: 2349153.0616438356
[2026-02-06 19:26:24] 2026-02-07 00:25:41,206 | INFO     | intersect: -5206529178.569874
[2026-02-06 19:26:24] 2026-02-07 00:25:41,206 | INFO     | chi2: 0.0005789952303459022
[2026-02-06 19:26:24] 2026-02-07 00:25:41,206 | INFO     | current chi2=0.0005789952303459022 (change=70.64630436847601 %)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,207 | INFO     | sum of square deviations: 869188390.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,207 | INFO     | sum of deviations: 2299166677.0000005
[2026-02-06 19:26:24] 2026-02-07 00:25:41,207 | INFO     | mean x: 1770419630.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,207 | INFO     | mean y: 2350010.5673758867
[2026-02-06 19:26:24] 2026-02-07 00:25:41,207 | INFO     | intersect: -4680742704.928595
[2026-02-06 19:26:24] 2026-02-07 00:25:41,207 | INFO     | chi2: 0.0004259117010625932
[2026-02-06 19:26:24] 2026-02-07 00:25:41,208 | INFO     | current chi2=0.0004259117010625932 (change=26.43951474209108 %)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,208 | INFO     | sum of square deviations: 779958810.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,208 | INFO     | sum of deviations: 1857005615.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,208 | INFO     | mean x: 1770419782.5
[2026-02-06 19:26:24] 2026-02-07 00:25:41,208 | INFO     | mean y: 2350766.4411764704
[2026-02-06 19:26:24] 2026-02-07 00:25:41,208 | INFO     | intersect: -4212845516.820986
[2026-02-06 19:26:24] 2026-02-07 00:25:41,209 | INFO     | chi2: 0.00032887882705269614
[2026-02-06 19:26:24] 2026-02-07 00:25:41,209 | INFO     | current chi2=0.00032887882705269614 (change=22.78239216434132 %)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,209 | INFO     | left removable region: 50
[2026-02-06 19:26:24] 2026-02-07 00:25:41,209 | INFO     | sum of square deviations: 358927660.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,209 | INFO     | sum of deviations: 666491795.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,209 | INFO     | mean x: 1770420362.0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,209 | INFO     | mean y: 2352730.9523809524
[2026-02-06 19:26:24] 2026-02-07 00:25:41,209 | INFO     | intersect: -3285136020.8867216
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | chi2: 0.0001528378350919115
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | current memory leak: 1.86 B/s (using 105 data points, chi2=0.00)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | could have reported an average CPU frequency of 3824 MHz (9 samples)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | ..............................
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | . Timing measurements:
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | . get job = 0 s
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | . initial setup = 4 s
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | . payload setup = 3 s
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | . stage-in = 0 s
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | . payload execution = 9799 s
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | . stage-out = 0 s
[2026-02-06 19:26:24] 2026-02-07 00:25:41,210 | INFO     | . log creation = 0 s
[2026-02-06 19:26:24] 2026-02-07 00:25:41,211 | INFO     | ..............................
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | 
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | job summary report
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | --------------------------------------------------
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | PanDA job id: 6996408476
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | task id: 48431113
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | errors: (none)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | pilot state: finished 
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | transexitcode: 0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | exeerrorcode: 0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | exeerrordiag: 
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | exitcode: 0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | exitmsg: OK
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | cpuconsumptiontime: 37608 s
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | nevents: 400
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | neventsw: 0
[2026-02-06 19:26:24] 2026-02-07 00:25:41,272 | INFO     | pid: 480829
[2026-02-06 19:26:24] 2026-02-07 00:25:41,273 | INFO     | pgrp: 480829
[2026-02-06 19:26:24] 2026-02-07 00:25:41,273 | INFO     | corecount: 4
[2026-02-06 19:26:24] 2026-02-07 00:25:41,273 | INFO     | event service: False
[2026-02-06 19:26:24] 2026-02-07 00:25:41,273 | INFO     | sizes: {0: 2283124, 11: 2283124, 9806: 2311769, 9807: 2320837, 9808: 2321039}
[2026-02-06 19:26:24] 2026-02-07 00:25:41,273 | INFO     | --------------------------------------------------
[2026-02-06 19:26:24] 2026-02-07 00:25:41,273 | INFO     | 
[2026-02-06 19:26:24] 2026-02-07 00:25:41,273 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2026-02-06 19:26:24] 2026-02-07 00:25:41,287 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,288 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,289 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,289 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 19:26:24] 2026-02-07 00:25:41,289 | INFO     | job 6996408476 has completed (purged errors)
[2026-02-06 19:26:24] 2026-02-07 00:25:41,289 | INFO     | overall cleanup function is called
[2026-02-06 19:26:24] 2026-02-07 00:25:42,297 | INFO     | --- collectZombieJob: --- 10, [480829]
[2026-02-06 19:26:24] 2026-02-07 00:25:42,297 | INFO     | zombie collector waiting for pid 480829
[2026-02-06 19:26:24] 2026-02-07 00:25:42,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 19:26:24] 2026-02-07 00:25:42,297 | INFO     | collected zombie processes
[2026-02-06 19:26:24] 2026-02-07 00:25:42,297 | INFO     | will attempt to kill all subprocesses of pid=480829
[2026-02-06 19:26:24] 2026-02-07 00:25:42,443 | INFO     | process IDs to be killed: [480829] (in reverse order)
[2026-02-06 19:26:24] 2026-02-07 00:25:42,495 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 19:26:24] 2026-02-07 00:25:42,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 19:26:24] 2026-02-07 00:25:42,499 | INFO     | did not find any defunct processes belonging to 480829
[2026-02-06 19:26:24] 2026-02-07 00:25:42,503 | INFO     | did not find any defunct processes belonging to 480829
[2026-02-06 19:26:24] 2026-02-07 00:25:42,503 | INFO     | ready for new job
[2026-02-06 19:26:24] 2026-02-07 00:25:42,503 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 19:26:24] 2026-02-07 00:25:42,504 | INFO     | **************************************
[2026-02-06 19:26:24] 2026-02-07 00:25:42,504 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 19:26:24] 2026-02-07 00:25:42,504 | INFO     | **************************************
[2026-02-06 19:26:24] 2026-02-07 00:25:42,504 | INFO     | 
[2026-02-06 19:26:24] 2026-02-07 00:25:42,506 | INFO     | architecture information:
[2026-02-06 19:26:24] 2026-02-07 00:25:42,506 | INFO     | executing command: cat /etc/os-release
[2026-02-06 19:26:24] 2026-02-07 00:25:42,516 | INFO     | cat /etc/os-release:
[2026-02-06 19:26:24] NAME="CentOS Linux"
[2026-02-06 19:26:24] VERSION="7 (Core)"
[2026-02-06 19:26:24] ID="centos"
[2026-02-06 19:26:24] ID_LIKE="rhel fedora"
[2026-02-06 19:26:24] VERSION_ID="7"
[2026-02-06 19:26:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 19:26:24] ANSI_COLOR="0;31"
[2026-02-06 19:26:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 19:26:24] HOME_URL="https://www.centos.org/"
[2026-02-06 19:26:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 19:26:24] 
[2026-02-06 19:26:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 19:26:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 19:26:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 19:26:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 19:26:24] 
[2026-02-06 19:26:24] 2026-02-07 00:25:42,516 | INFO     | **************************************
[2026-02-06 19:26:24] 2026-02-07 00:25:43,019 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2026-02-06 19:26:24] 2026-02-07 00:25:43,031 | INFO     | sufficient remaining disk space (392566931456 B)
[2026-02-06 19:26:24] 2026-02-07 00:25:43,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 19:26:24] 2026-02-07 00:25:43,031 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 19:26:24] 2026-02-07 00:25:43,031 | INFO     | update_server=False
[2026-02-06 19:26:24] 2026-02-07 00:25:43,031 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 19:26:24] 2026-02-07 00:25:43,031 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 19:26:24] 2026-02-07 00:25:43,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 19:26:24] 2026-02-07 00:25:43,624 | WARNING  | process 480829 can no longer be monitored (due to stat problems) - aborting
[2026-02-06 19:26:24] 2026-02-07 00:25:43,734 | INFO     | using path: /var/lib/boinc-client/slots/5/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 19:26:24] 2026-02-07 00:25:43,735 | INFO     | using path: /var/lib/boinc-client/slots/5/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 19:26:24] 2026-02-07 00:25:43,735 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-06 19:26:24] 2026-02-07 00:25:43,735 | WARNING  | maxPSS not found in memory monitor output
[2026-02-06 19:26:24] 2026-02-07 00:25:43,735 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/5/PanDA_Pilot-6996408476/payload.stdout) since it has not been created yet
[2026-02-06 19:26:24] 2026-02-07 00:25:43,735 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2026-02-06 19:26:24] 2026-02-07 00:25:43,745 | INFO     | sufficient remaining disk space (392566931456 B)
[2026-02-06 19:26:24] 2026-02-07 00:25:43,746 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-06 19:26:24] 2026-02-07 00:25:43,746 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/5/PanDA_Pilot-6996408476/HITS.48431113._002342.pool.root.1 since it does not exist
[2026-02-06 19:26:24] 2026-02-07 00:25:43,812 | INFO     | all data control threads have been joined
[2026-02-06 19:26:24] 2026-02-07 00:25:43,888 | INFO     | all job control threads have been joined
[2026-02-06 19:26:24] 2026-02-07 00:25:43,891 | INFO     | number of running child processes to parent process 480829: 1
[2026-02-06 19:26:24] 2026-02-07 00:25:43,891 | INFO     | maximum number of monitored processes: 6
[2026-02-06 19:26:24] 2026-02-07 00:25:43,891 | INFO     | aborting job monitoring since job object (job id=6996408476) has expired
[2026-02-06 19:26:24] 2026-02-07 00:25:43,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 19:26:24] 2026-02-07 00:25:43,891 | INFO     | will abort loop
[2026-02-06 19:26:24] 2026-02-07 00:25:44,032 | INFO     | [job] retrieve thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,035 | INFO     | [job] queue monitor thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,195 | INFO     | all payload control threads have been joined
[2026-02-06 19:26:24] 2026-02-07 00:25:44,622 | INFO     | [job] validate thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,704 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,818 | INFO     | [data] control thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,893 | INFO     | [job] control thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,896 | INFO     | [job] job monitor thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,929 | INFO     | [payload] failed_post thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,940 | INFO     | [data] copytool_in thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:44,944 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:45,144 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:45,199 | INFO     | [payload] control thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:45,316 | INFO     | [data] copytool_out thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:45,356 | INFO     | job.realtimelogging is not enabled
[2026-02-06 19:26:24] 2026-02-07 00:25:45,538 | INFO     | [payload] validate_post thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:46,362 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:25:46,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 19:26:24] 2026-02-07 00:25:50,376 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 19:26:24] 2026-02-07 00:26:12,934 | INFO     | PID=476261 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-06 19:26:24] 2026-02-07 00:26:12,934 | INFO     | .. there are 8 such processes running
[2026-02-06 19:26:24] 2026-02-07 00:26:12,934 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 19:26:24] 2026-02-07 00:26:12,934 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 19:26:24] 2026-02-07 00:26:12,935 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 19:26:24] 2026-02-07 00:26:17,701 | INFO     | [monitor] cgroup control has ended
[2026-02-06 19:26:24] 2026-02-07 00:26:19,045 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131880855390016)>', '<ExcThread(monitor, started 131879848109824)>']
[2026-02-06 19:26:24] 2026-02-07 00:26:19,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 19:26:24] 2026-02-07 00:26:19,964 | INFO     | [monitor] control thread has ended
[2026-02-06 19:26:24] 2026-02-07 00:26:24,070 | INFO     | all workflow threads have been joined
[2026-02-06 19:26:24] 2026-02-07 00:26:24,070 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 19:26:24] 2026-02-07 00:26:24,070 | INFO     | traces error code: 0
[2026-02-06 19:26:24] 2026-02-07 00:26:24,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 19:26:24] 2026-02-07 00:26:24,139 [wrapper] ==== pilot stdout END ====
[2026-02-06 19:26:24] 2026-02-07 00:26:24,141 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 19:26:24] 2026-02-07 00:26:24,143 [wrapper] pilotpid: 476261
[2026-02-06 19:26:24] 2026-02-07 00:26:24,144 [wrapper] Pilot exit status: 0
[2026-02-06 19:26:24] 2026-02-07 00:26:24,151 [wrapper] pandaids: 6996408476
[2026-02-06 19:26:24] 2026-02-07 00:26:24,183 [wrapper] cleanup supervisor_pilot  607027 476262
[2026-02-06 19:26:24] 2026-02-07 00:26:24,185 [wrapper] Test setup, not cleaning
[2026-02-06 19:26:24] 2026-02-07 00:26:24,187 [wrapper] apfmon messages muted
[2026-02-06 19:26:24] 2026-02-07 00:26:24,189 [wrapper] ==== wrapper stdout END ====
[2026-02-06 19:26:24] 2026-02-07 00:26:24,191 [wrapper] ==== wrapper stderr END ====
[2026-02-06 19:26:24]  *** Error codes and diagnostics ***
[2026-02-06 19:26:24]     "exeErrorCode": 0,
[2026-02-06 19:26:24]     "exeErrorDiag": "",
[2026-02-06 19:26:24]     "pilotErrorCode": 0,
[2026-02-06 19:26:24]     "pilotErrorDiag": "",
[2026-02-06 19:26:24]  *** Listing of results directory ***
[2026-02-06 19:26:24] total 888544
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc    584627 Feb  6 00:55 pilot3.tar.gz
[2026-02-06 19:26:24] -rwx------ 1 boinc boinc     36322 Feb  6 00:55 runpilot2-wrapper.sh
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc      5111 Feb  6 00:56 queuedata.json
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc       100 Feb  6 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 19:26:24] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 16:41 run_atlas
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc       105 Feb  6 16:41 job.xml
[2026-02-06 19:26:24] -rw-r--r-- 2 boinc boinc 647340402 Feb  6 16:41 EVNT.48431111._000047.pool.root.1
[2026-02-06 19:26:24] -rw-r--r-- 2 boinc boinc     15845 Feb  6 16:41 start_atlas.sh
[2026-02-06 19:26:24] drwxrwx--x 2 boinc boinc      4096 Feb  6 16:41 shared
[2026-02-06 19:26:24] -rw-r--r-- 2 boinc boinc    597948 Feb  6 16:41 input.tar.gz
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc      6476 Feb  6 16:41 init_data.xml
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc         0 Feb  6 16:41 boinc_setup_complete
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc         0 Feb  6 16:41 boinc_lockfile
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc      2544 Feb  6 16:41 pandaJob.out
[2026-02-06 19:26:24] -rw------- 1 boinc boinc   1009504 Feb  6 16:41 agis_schedconf.cvmfs.json
[2026-02-06 19:26:24] -rw------- 1 boinc boinc   1513088 Feb  6 16:41 agis_ddmendpoints.agis.ALL.json
[2026-02-06 19:26:24] -rw------- 1 boinc boinc       419 Feb  6 16:42 workernode_map.json
[2026-02-06 19:26:24] drwx------ 5 boinc boinc      4096 Feb  6 16:42 pilot3
[2026-02-06 19:26:24] -rw------- 1 boinc boinc 254990132 Feb  6 19:25 HITS.48431113._002342.pool.root.1
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc       530 Feb  6 19:25 boinc_task_state.xml
[2026-02-06 19:26:24] -rw------- 1 boinc boinc      1025 Feb  6 19:25 memory_monitor_summary.json
[2026-02-06 19:26:24] -rw------- 1 boinc boinc    373212 Feb  6 19:25 log.48431113._002342.job.log.tgz.1
[2026-02-06 19:26:24] -rw------- 1 boinc boinc      6283 Feb  6 19:25 heartbeat.json
[2026-02-06 19:26:24] -rw------- 1 boinc boinc        95 Feb  6 19:26 pilot_heartbeat.json
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc        27 Feb  6 19:26 wrapper_checkpoint.txt
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc      8192 Feb  6 19:26 boinc_mmap_file
[2026-02-06 19:26:24] -rw------- 1 boinc boinc      6417 Feb  6 19:26 pilotlog.txt
[2026-02-06 19:26:24] -rw------- 1 boinc boinc   1424642 Feb  6 19:26 log.48431113._002342.job.log.1
[2026-02-06 19:26:24] -rw------- 1 boinc boinc       357 Feb  6 19:26 output.list
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc       620 Feb  6 19:26 runtime_log
[2026-02-06 19:26:24] -rw------- 1 boinc boinc   1812480 Feb  6 19:26 result.tar.gz
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc      8891 Feb  6 19:26 runtime_log.err
[2026-02-06 19:26:24] -rw------- 1 boinc boinc       643 Feb  6 19:26 lvMKDmzzT88n9Rq4apOajLDm4fhM0noT9bVooX4SDmTkXKDmmrEXBn.diag
[2026-02-06 19:26:24] -rw-r--r-- 1 boinc boinc     21562 Feb  6 19:26 stderr.txt
[2026-02-06 19:26:24] HITS file was successfully produced:
[2026-02-06 19:26:24] -rw------- 1 boinc boinc 254990132 Feb  6 19:25 shared/HITS.pool.root.1
[2026-02-06 19:26:24]  *** Contents of shared directory: ***
[2026-02-06 19:26:24] total 883568
[2026-02-06 19:26:24] -rw-r--r-- 2 boinc boinc 647340402 Feb  6 16:41 ATLAS.root_0
[2026-02-06 19:26:24] -rw-r--r-- 2 boinc boinc     15845 Feb  6 16:41 start_atlas.sh
[2026-02-06 19:26:24] -rw-r--r-- 2 boinc boinc    597948 Feb  6 16:41 input.tar.gz
[2026-02-06 19:26:24] -rw------- 1 boinc boinc 254990132 Feb  6 19:25 HITS.pool.root.1
[2026-02-06 19:26:24] -rw------- 1 boinc boinc   1812480 Feb  6 19:26 result.tar.gz
19:26:26 (472414): run_atlas exited; CPU time 37756.000983
19:26:26 (472414): called boinc_finish(0)

</stderr_txt>
]]>

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