Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:01:39 (2705580): wrapper (7.7.26015): starting
23:01:39 (2705580): wrapper: running run_atlas (--nthreads 2)
[2026-02-06 23:01:39] Arguments: --nthreads 2
[2026-02-06 23:01:39] Threads: 2
[2026-02-06 23:01:39] Checking for CVMFS
[2026-02-06 23:01:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 23:01:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 23:01:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 23:01:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 23:01:40] 2.9.2.0 2622099 915 53992 155960 2 50 22677213 36864001 0 130560 0 246256 99.971 37087 16842 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 23:01:40] CVMFS is ok
[2026-02-06 23:01:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 23:01:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 23:01:40] Further information can be found at the LHC@home message board.
[2026-02-06 23:01:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 23:01:40] Checking for apptainer binary...
[2026-02-06 23:01:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 23:01:40] Running /usr/bin/apptainer --version
[2026-02-06 23:01:40] apptainer version 1.4.1-1.1
[2026-02-06 23:01:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 23:01:40] thA314b
[2026-02-06 23:01:40] apptainer works
[2026-02-06 23:01:40] Set ATHENA_PROC_NUMBER=2
[2026-02-06 23:01:40] Set ATHENA_CORE_NUMBER=2
[2026-02-06 23:01:40] Starting ATLAS job with PandaID=6997084952
[2026-02-06 23:01:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 01:08:35]  *** The last 200 lines of the pilot log: ***
[2026-02-07 01:08:35] 2026-02-07 00:08:04,343 | INFO     | overall cleanup function is called
[2026-02-07 01:08:35] 2026-02-07 00:08:05,349 | INFO     | --- collectZombieJob: --- 10, [2714016]
[2026-02-07 01:08:35] 2026-02-07 00:08:05,350 | INFO     | zombie collector waiting for pid 2714016
[2026-02-07 01:08:35] 2026-02-07 00:08:05,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 01:08:35] 2026-02-07 00:08:05,350 | INFO     | collected zombie processes
[2026-02-07 01:08:35] 2026-02-07 00:08:05,350 | INFO     | will attempt to kill all subprocesses of pid=2714016
[2026-02-07 01:08:35] 2026-02-07 00:08:05,382 | INFO     | process IDs to be killed: [2714016] (in reverse order)
[2026-02-07 01:08:35] 2026-02-07 00:08:05,402 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 01:08:35] 2026-02-07 00:08:05,402 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 01:08:35] 2026-02-07 00:08:05,403 | INFO     | did not find any defunct processes belonging to 2714016
[2026-02-07 01:08:35] 2026-02-07 00:08:05,404 | INFO     | did not find any defunct processes belonging to 2714016
[2026-02-07 01:08:35] 2026-02-07 00:08:05,404 | INFO     | ready for new job
[2026-02-07 01:08:35] 2026-02-07 00:08:05,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 01:08:35] 2026-02-07 00:08:05,404 | INFO     | **************************************
[2026-02-07 01:08:35] 2026-02-07 00:08:05,404 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 01:08:35] 2026-02-07 00:08:05,404 | INFO     | **************************************
[2026-02-07 01:08:35] 2026-02-07 00:08:05,404 | INFO     | 
[2026-02-07 01:08:35] 2026-02-07 00:08:05,405 | INFO     | architecture information:
[2026-02-07 01:08:35] 2026-02-07 00:08:05,405 | INFO     | executing command: cat /etc/os-release
[2026-02-07 01:08:35] 2026-02-07 00:08:05,412 | INFO     | cat /etc/os-release:
[2026-02-07 01:08:35] NAME="CentOS Linux"
[2026-02-07 01:08:35] VERSION="7 (Core)"
[2026-02-07 01:08:35] ID="centos"
[2026-02-07 01:08:35] ID_LIKE="rhel fedora"
[2026-02-07 01:08:35] VERSION_ID="7"
[2026-02-07 01:08:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 01:08:35] ANSI_COLOR="0;31"
[2026-02-07 01:08:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 01:08:35] HOME_URL="https://www.centos.org/"
[2026-02-07 01:08:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 01:08:35] 
[2026-02-07 01:08:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 01:08:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 01:08:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 01:08:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 01:08:35] 
[2026-02-07 01:08:35] 2026-02-07 00:08:05,413 | INFO     | **************************************
[2026-02-07 01:08:35] 2026-02-07 00:08:05,916 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 01:08:35] 2026-02-07 00:08:05,927 | INFO     | sufficient remaining disk space (499500711936 B)
[2026-02-07 01:08:35] 2026-02-07 00:08:05,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 01:08:35] 2026-02-07 00:08:05,928 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 01:08:35] 2026-02-07 00:08:05,928 | INFO     | update_server=False
[2026-02-07 01:08:35] 2026-02-07 00:08:05,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 01:08:35] 2026-02-07 00:08:05,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 01:08:35] 2026-02-07 00:08:06,184 | WARNING  | process 2714016 can no longer be monitored (due to stat problems) - aborting
[2026-02-07 01:08:35] 2026-02-07 00:08:06,205 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 01:08:35] 2026-02-07 00:08:06,232 | INFO     | number of running child processes to parent process 2714016: 1
[2026-02-07 01:08:35] 2026-02-07 00:08:06,232 | INFO     | maximum number of monitored processes: 6
[2026-02-07 01:08:35] 2026-02-07 00:08:06,232 | INFO     | aborting job monitoring since job object (job id=6997084952) has expired
[2026-02-07 01:08:35] 2026-02-07 00:08:06,232 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 01:08:35] 2026-02-07 00:08:06,232 | INFO     | will abort loop
[2026-02-07 01:08:35] 2026-02-07 00:08:06,424 | INFO     | all payload control threads have been joined
[2026-02-07 01:08:35] 2026-02-07 00:08:06,485 | INFO     | all data control threads have been joined
[2026-02-07 01:08:35] 2026-02-07 00:08:06,853 | INFO     | all job control threads have been joined
[2026-02-07 01:08:35] 2026-02-07 00:08:06,933 | INFO     | [job] queue monitor thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:06,934 | INFO     | [job] retrieve thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,035 | INFO     | [payload] validate_post thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,144 | INFO     | [payload] failed_post thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,238 | INFO     | [job] job monitor thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,403 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 01:08:35] 2026-02-07 00:08:07,430 | INFO     | [payload] control thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,491 | INFO     | [data] control thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,758 | INFO     | [job] validate thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,835 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,858 | INFO     | [job] control thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:07,975 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:08,041 | INFO     | [data] copytool_in thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:08,194 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:08,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 01:08:35] 2026-02-07 00:08:09,410 | INFO     | [data] copytool_out thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:10,199 | INFO     | [monitor] cgroup control has ended
[2026-02-07 01:08:35] 2026-02-07 00:08:12,400 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:16,168 | INFO     | job.realtimelogging is not enabled
[2026-02-07 01:08:35] 2026-02-07 00:08:17,174 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 01:08:35] 2026-02-07 00:08:17,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473117390656)>', '<ExcThread(monitor, started 140472408340224)>']
[2026-02-07 01:08:35] 2026-02-07 00:08:22,765 | INFO     | all workflow threads have been joined
[2026-02-07 01:08:35] 2026-02-07 00:08:22,766 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 01:08:35] 2026-02-07 00:08:22,766 | INFO     | traces error code: 0
[2026-02-07 01:08:35] 2026-02-07 00:08:22,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 01:08:35] 2026-02-07 00:08:35,807 | INFO     | PID=2709606 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 01:08:35] 2026-02-07 00:08:35,808 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 01:08:35] 2026-02-07 00:08:35,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 01:08:35] 2026-02-07 00:08:35,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 01:08:35] 2026-02-07 00:08:35,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 01:08:35] 2026-02-07 00:08:35,808 | INFO     | [monitor] control thread has ended
[2026-02-07 01:08:35] 2026-02-07 00:08:35,847 [wrapper] ==== pilot stdout END ====
[2026-02-07 01:08:35] 2026-02-07 00:08:35,850 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 01:08:35] 2026-02-07 00:08:35,852 [wrapper] pilotpid: 2709606
[2026-02-07 01:08:35] 2026-02-07 00:08:35,854 [wrapper] Pilot exit status: 0
[2026-02-07 01:08:35] 2026-02-07 00:08:35,860 [wrapper] pandaids: 6997084952
[2026-02-07 01:08:35] 2026-02-07 00:08:35,872 [wrapper] cleanup supervisor_pilot 2719117 2709607
[2026-02-07 01:08:35] 2026-02-07 00:08:35,874 [wrapper] Test setup, not cleaning
[2026-02-07 01:08:35] 2026-02-07 00:08:35,877 [wrapper] apfmon messages muted
[2026-02-07 01:08:35] 2026-02-07 00:08:35,879 [wrapper] ==== wrapper stdout END ====
[2026-02-07 01:08:35] 2026-02-07 00:08:35,881 [wrapper] ==== wrapper stderr END ====
[2026-02-07 01:08:35]  *** Error codes and diagnostics ***
[2026-02-07 01:08:35]     "exeErrorCode": 0,
[2026-02-07 01:08:35]     "exeErrorDiag": "",
[2026-02-07 01:08:35]     "pilotErrorCode": 0,
[2026-02-07 01:08:35]     "pilotErrorDiag": "",
[2026-02-07 01:08:35]  *** Listing of results directory ***
[2026-02-07 01:08:35] total 669768
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc    584627 Feb  6 10:13 pilot3.tar.gz
[2026-02-07 01:08:35] -rwx------ 1 boinc boinc     36322 Feb  6 10:14 runpilot2-wrapper.sh
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc      5111 Feb  6 10:15 queuedata.json
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc       100 Feb  6 23:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 01:08:35] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 23:01 run_atlas
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc       105 Feb  6 23:01 job.xml
[2026-02-07 01:08:35] -rw-r--r-- 2 boinc boinc 497498271 Feb  6 23:01 EVNT.48318008._000180.pool.root.1
[2026-02-07 01:08:35] -rw-r--r-- 2 boinc boinc    597949 Feb  6 23:01 input.tar.gz
[2026-02-07 01:08:35] -rw-r--r-- 2 boinc boinc     15845 Feb  6 23:01 start_atlas.sh
[2026-02-07 01:08:35] drwxrwx--x 2 boinc boinc      4096 Feb  6 23:01 shared
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc         0 Feb  6 23:01 boinc_setup_complete
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc      6207 Feb  6 23:01 init_data.xml
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc         0 Feb  6 23:01 boinc_lockfile
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc      2526 Feb  6 23:01 pandaJob.out
[2026-02-07 01:08:35] -rw------- 1 boinc boinc   1009520 Feb  6 23:01 agis_schedconf.cvmfs.json
[2026-02-07 01:08:35] -rw------- 1 boinc boinc   1513088 Feb  6 23:01 agis_ddmendpoints.agis.ALL.json
[2026-02-07 01:08:35] -rw------- 1 boinc boinc       426 Feb  6 23:01 workernode_map.json
[2026-02-07 01:08:35] drwx------ 5 boinc boinc      4096 Feb  6 23:02 pilot3
[2026-02-07 01:08:35] -rw------- 1 boinc boinc 181626727 Feb  7 01:07 HITS.48318010._010021.pool.root.1
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc       530 Feb  7 01:07 boinc_task_state.xml
[2026-02-07 01:08:35] -rw------- 1 boinc boinc      1013 Feb  7 01:07 memory_monitor_summary.json
[2026-02-07 01:08:35] -rw------- 1 boinc boinc    307333 Feb  7 01:08 log.48318010._010021.job.log.tgz.1
[2026-02-07 01:08:35] -rw------- 1 boinc boinc      6296 Feb  7 01:08 heartbeat.json
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc        27 Feb  7 01:08 wrapper_checkpoint.txt
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc      8192 Feb  7 01:08 boinc_mmap_file
[2026-02-07 01:08:35] -rw------- 1 boinc boinc       747 Feb  7 01:08 pilotlog.txt
[2026-02-07 01:08:35] -rw------- 1 boinc boinc        95 Feb  7 01:08 pilot_heartbeat.json
[2026-02-07 01:08:35] -rw------- 1 boinc boinc   1089119 Feb  7 01:08 log.48318010._010021.job.log.1
[2026-02-07 01:08:35] -rw------- 1 boinc boinc       357 Feb  7 01:08 output.list
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc       620 Feb  7 01:08 runtime_log
[2026-02-07 01:08:35] -rw------- 1 boinc boinc   1413120 Feb  7 01:08 result.tar.gz
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc      8901 Feb  7 01:08 runtime_log.err
[2026-02-07 01:08:35] -rw------- 1 boinc boinc       658 Feb  7 01:08 JweMDmO6W88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmgYKDmZdKuEn.diag
[2026-02-07 01:08:35] -rw-r--r-- 1 boinc boinc     11431 Feb  7 01:08 stderr.txt
[2026-02-07 01:08:35] HITS file was successfully produced:
[2026-02-07 01:08:35] -rw------- 1 boinc boinc 181626727 Feb  7 01:07 shared/HITS.pool.root.1
[2026-02-07 01:08:35]  *** Contents of shared directory: ***
[2026-02-07 01:08:35] total 665200
[2026-02-07 01:08:35] -rw-r--r-- 2 boinc boinc 497498271 Feb  6 23:01 ATLAS.root_0
[2026-02-07 01:08:35] -rw-r--r-- 2 boinc boinc    597949 Feb  6 23:01 input.tar.gz
[2026-02-07 01:08:35] -rw-r--r-- 2 boinc boinc     15845 Feb  6 23:01 start_atlas.sh
[2026-02-07 01:08:35] -rw------- 1 boinc boinc 181626727 Feb  7 01:07 HITS.pool.root.1
[2026-02-07 01:08:35] -rw------- 1 boinc boinc   1413120 Feb  7 01:08 result.tar.gz
01:08:37 (2705580): run_atlas exited; CPU time 14735.589511
01:08:37 (2705580): called boinc_finish(0)

</stderr_txt>
]]>

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