Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:28:11 (1048161): wrapper (7.7.26015): starting
04:28:11 (1048161): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 04:28:11] Arguments: --nthreads 8
[2026-02-06 04:28:11] Threads: 8
[2026-02-06 04:28:11] Checking for CVMFS
[2026-02-06 04:28:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 04:28:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 04:28:12] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 04:28:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 04:28:12] 2.13.3.0 8759 61520 172444 155934 0 832 35438202 40960001 33186 16776704 0 476152487 99.707 353685668 45401 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-06 04:28:12] CVMFS is ok
[2026-02-06 04:28:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 04:28:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 04:28:12] Further information can be found at the LHC@home message board.
[2026-02-06 04:28:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 04:28:12] Checking for apptainer binary...
[2026-02-06 04:28:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 04:28:12] Running /usr/bin/apptainer --version
[2026-02-06 04:28:12] apptainer version 1.4.5-2.el9
[2026-02-06 04:28:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 04:28:13] c-208-39.aglt2.org
[2026-02-06 04:28:13] apptainer works
[2026-02-06 04:28:13] Set ATHENA_PROC_NUMBER=8
[2026-02-06 04:28:13] Set ATHENA_CORE_NUMBER=8
[2026-02-06 04:28:13] Starting ATLAS job with PandaID=7000906325
[2026-02-06 04:28:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:00:12 (1048161): BOINC client no longer exists - exiting
05:00:12 (1048161): timer handler: client dead, exiting
05:13:39 (1236379): wrapper (7.7.26015): starting
05:13:39 (1236379): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 05:13:39] Arguments: --nthreads 8
[2026-02-06 05:13:39] Threads: 8
[2026-02-06 05:13:39] This job has been restarted, cleaning up previous attempt
[2026-02-06 05:13:39] Checking for CVMFS
[2026-02-06 05:13:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 05:13:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 05:13:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 05:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 05:13:40] 2.13.3.0 8759 61565 138676 155936 3 358 35551027 40960000 25601 16776704 0 476386301 99.707 353688354 45401 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-06 05:13:40] CVMFS is ok
[2026-02-06 05:13:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 05:13:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 05:13:40] Further information can be found at the LHC@home message board.
[2026-02-06 05:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 05:13:40] Checking for apptainer binary...
[2026-02-06 05:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 05:13:40] Running /usr/bin/apptainer --version
[2026-02-06 05:13:41] apptainer version 1.4.5-2.el9
[2026-02-06 05:13:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 05:13:43] c-208-39.aglt2.org
[2026-02-06 05:13:43] apptainer works
[2026-02-06 05:13:43] Set ATHENA_PROC_NUMBER=8
[2026-02-06 05:13:43] Set ATHENA_CORE_NUMBER=8
[2026-02-06 05:13:43] Starting ATLAS job with PandaID=7000906325
[2026-02-06 05:13:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 07:08:37]  *** The last 200 lines of the pilot log: ***
[2026-02-06 07:08:37] 2026-02-06 12:08:03,116 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,116 | INFO     | log transfer has been attempted: DONE
[2026-02-06 07:08:37] 2026-02-06 12:08:03,116 | INFO     | job 7000906325 has finished - writing final server update
[2026-02-06 07:08:37] 2026-02-06 12:08:03,117 | INFO     | total number of processed events: 400 (read)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,132 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7000906325/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,133 | INFO     | extracted standard info from prmon json
[2026-02-06 07:08:37] 2026-02-06 12:08:03,133 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 07:08:37] 2026-02-06 12:08:03,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 07:08:37] 2026-02-06 12:08:03,133 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 07:08:37] 2026-02-06 12:08:03,133 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 07:08:37] 2026-02-06 12:08:03,134 | INFO     | fitting pss+swap vs Time
[2026-02-06 07:08:37] 2026-02-06 12:08:03,135 | INFO     | sum of square deviations: 435670198.8571427
[2026-02-06 07:08:37] 2026-02-06 12:08:03,135 | INFO     | sum of deviations: 8465196426.142853
[2026-02-06 07:08:37] 2026-02-06 12:08:03,135 | INFO     | mean x: 1770376250.7142856
[2026-02-06 07:08:37] 2026-02-06 12:08:03,135 | INFO     | mean y: 2447129.910714286
[2026-02-06 07:08:37] 2026-02-06 12:08:03,135 | INFO     | intersect: -34396469182.90528
[2026-02-06 07:08:37] 2026-02-06 12:08:03,135 | INFO     | chi2: 2.0974656812416272
[2026-02-06 07:08:37] 2026-02-06 12:08:03,135 | INFO     | sum of square deviations: 379879350.8785047
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | sum of deviations: 14872668514.626165
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | mean x: 1770376098.1962616
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | mean y: 2463965.0654205605
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | intersect: -69309586805.26285
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | chi2: 1.4153428919669317
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | current chi2=1.4153428919669317 (change=32.521284871316816 %)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | sum of square deviations: 329084803.17647
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | sum of deviations: 14198598900.94118
[2026-02-06 07:08:37] 2026-02-06 12:08:03,136 | INFO     | mean x: 1770375945.7058823
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | mean y: 2461939.098039216
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | intersect: -76381672832.00148
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | chi2: 1.4174834875985545
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | current chi2=1.4174834875985545 (change=-0.15124219323614865 %)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | right removable region: 101
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | sum of square deviations: 379885088.61682194
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | sum of deviations: -7255335226.17757
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | mean x: 1770376403.224299
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | mean y: 2489145.2990654204
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | intersect: 33814488265.019234
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | chi2: 0.7125936478001166
[2026-02-06 07:08:37] 2026-02-06 12:08:03,137 | INFO     | current chi2=0.7125936478001166 (change=66.02596866432228 %)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | sum of square deviations: 329076815.8529419
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | sum of deviations: -7180864415.558823
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | mean x: 1770376555.735294
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | mean y: 2488900.1274509802
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | intersect: 38634301895.72993
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | chi2: 0.7126488939541973
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | current chi2=0.7126488939541973 (change=-0.00775282718997771 %)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | left removable region: 20
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | sum of square deviations: 164801157.0617282
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | sum of deviations: -99068876.50617279
[2026-02-06 07:08:37] 2026-02-06 12:08:03,138 | INFO     | mean x: 1770376525.2469137
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | mean y: 2507705.975308642
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | intersect: 1066755169.2587107
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | chi2: 0.00013275365633273192
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | current memory leak: -0.60 B/s (using 81 data points, chi2=0.00)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | could have reported an average CPU frequency of 3729 MHz (7 samples)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | ..............................
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | . Timing measurements:
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | . get job = 0 s
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | . initial setup = 1 s
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | . payload setup = 8 s
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | . stage-in = 0 s
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | . payload execution = 6815 s
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | . stage-out = 1 s
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | . log creation = 0 s
[2026-02-06 07:08:37] 2026-02-06 12:08:03,139 | INFO     | ..............................
[2026-02-06 07:08:37] 2026-02-06 12:08:03,190 | INFO     | 
[2026-02-06 07:08:37] 2026-02-06 12:08:03,190 | INFO     | job summary report
[2026-02-06 07:08:37] 2026-02-06 12:08:03,190 | INFO     | --------------------------------------------------
[2026-02-06 07:08:37] 2026-02-06 12:08:03,190 | INFO     | PanDA job id: 7000906325
[2026-02-06 07:08:37] 2026-02-06 12:08:03,190 | INFO     | task id: 48317952
[2026-02-06 07:08:37] 2026-02-06 12:08:03,190 | INFO     | errors: (none)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | pilot state: finished 
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | transexitcode: 0
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | exeerrorcode: 0
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | exeerrordiag: 
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | exitcode: 0
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | exitmsg: OK
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | cpuconsumptiontime: 25643 s
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | nevents: 400
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | neventsw: 0
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | pid: 1286283
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | pgrp: 1286283
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | corecount: 8
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | event service: False
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | sizes: {0: 2282657, 1: 2283118, 11: 2283118, 6826: 2310307, 6828: 2319305, 6831: 2319361, 6834: 2319683}
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | --------------------------------------------------
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | 
[2026-02-06 07:08:37] 2026-02-06 12:08:03,191 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-02-06 07:08:37] 2026-02-06 12:08:03,277 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,278 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 07:08:37] 2026-02-06 12:08:03,279 | INFO     | job 7000906325 has completed (purged errors)
[2026-02-06 07:08:37] 2026-02-06 12:08:03,279 | INFO     | overall cleanup function is called
[2026-02-06 07:08:37] 2026-02-06 12:08:04,288 | INFO     | --- collectZombieJob: --- 10, [1286283]
[2026-02-06 07:08:37] 2026-02-06 12:08:04,288 | INFO     | zombie collector waiting for pid 1286283
[2026-02-06 07:08:37] 2026-02-06 12:08:04,288 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 07:08:37] 2026-02-06 12:08:04,288 | INFO     | collected zombie processes
[2026-02-06 07:08:37] 2026-02-06 12:08:04,288 | INFO     | will attempt to kill all subprocesses of pid=1286283
[2026-02-06 07:08:37] 2026-02-06 12:08:05,254 | INFO     | process IDs to be killed: [1286283] (in reverse order)
[2026-02-06 07:08:37] 2026-02-06 12:08:05,643 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 07:08:37] 2026-02-06 12:08:05,644 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 07:08:37] 2026-02-06 12:08:05,722 | INFO     | did not find any defunct processes belonging to 1286283
[2026-02-06 07:08:37] 2026-02-06 12:08:05,771 | INFO     | did not find any defunct processes belonging to 1286283
[2026-02-06 07:08:37] 2026-02-06 12:08:05,771 | INFO     | ready for new job
[2026-02-06 07:08:37] 2026-02-06 12:08:05,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 07:08:37] 2026-02-06 12:08:05,773 | INFO     | **************************************
[2026-02-06 07:08:37] 2026-02-06 12:08:05,773 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 07:08:37] 2026-02-06 12:08:05,773 | INFO     | **************************************
[2026-02-06 07:08:37] 2026-02-06 12:08:05,773 | INFO     | 
[2026-02-06 07:08:37] 2026-02-06 12:08:05,786 | INFO     | architecture information:
[2026-02-06 07:08:37] 2026-02-06 12:08:05,786 | INFO     | executing command: cat /etc/os-release
[2026-02-06 07:08:37] 2026-02-06 12:08:05,840 | INFO     | cat /etc/os-release:
[2026-02-06 07:08:37] NAME="CentOS Linux"
[2026-02-06 07:08:37] VERSION="7 (Core)"
[2026-02-06 07:08:37] ID="centos"
[2026-02-06 07:08:37] ID_LIKE="rhel fedora"
[2026-02-06 07:08:37] VERSION_ID="7"
[2026-02-06 07:08:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 07:08:37] ANSI_COLOR="0;31"
[2026-02-06 07:08:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 07:08:37] HOME_URL="https://www.centos.org/"
[2026-02-06 07:08:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 07:08:37] 
[2026-02-06 07:08:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 07:08:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 07:08:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 07:08:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 07:08:37] 
[2026-02-06 07:08:37] 2026-02-06 12:08:05,840 | INFO     | **************************************
[2026-02-06 07:08:37] 2026-02-06 12:08:06,343 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-06 07:08:37] 2026-02-06 12:08:06,403 | INFO     | sufficient remaining disk space (163269574656 B)
[2026-02-06 07:08:37] 2026-02-06 12:08:06,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 07:08:37] 2026-02-06 12:08:06,404 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 07:08:37] 2026-02-06 12:08:06,404 | INFO     | update_server=False
[2026-02-06 07:08:37] 2026-02-06 12:08:06,404 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 07:08:37] 2026-02-06 12:08:06,404 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 07:08:37] 2026-02-06 12:08:06,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 07:08:37] 2026-02-06 12:08:06,634 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 07:08:37] 2026-02-06 12:08:06,634 | INFO     | aborting loop
[2026-02-06 07:08:37] 2026-02-06 12:08:07,009 | INFO     | all data control threads have been joined
[2026-02-06 07:08:37] 2026-02-06 12:08:07,364 | INFO     | all payload control threads have been joined
[2026-02-06 07:08:37] 2026-02-06 12:08:07,422 | INFO     | [job] retrieve thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:07,496 | INFO     | [payload] failed_post thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:07,563 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:07,603 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:07,640 | INFO     | [job] job monitor thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:07,716 | INFO     | [job] validate thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:07,724 | INFO     | all job control threads have been joined
[2026-02-06 07:08:37] 2026-02-06 12:08:07,818 | INFO     | [payload] validate_post thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:08,016 | INFO     | [data] control thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:08,210 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 07:08:37] 2026-02-06 12:08:08,330 | INFO     | [data] copytool_in thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:08,370 | INFO     | [payload] control thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:08,414 | INFO     | [data] copytool_out thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:08,439 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:08,730 | INFO     | [job] control thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:08,843 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:09,216 | INFO     | [job] queue monitor thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:10,002 | INFO     | [monitor] cgroup control has ended
[2026-02-06 07:08:37] 2026-02-06 12:08:10,415 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 07:08:37] 2026-02-06 12:08:11,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140283947226944)>', '<ExcThread(monitor, started 140283580749568)>']
[2026-02-06 07:08:37] 2026-02-06 12:08:16,710 | INFO     | all workflow threads have been joined
[2026-02-06 07:08:37] 2026-02-06 12:08:16,710 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 07:08:37] 2026-02-06 12:08:16,710 | INFO     | traces error code: 0
[2026-02-06 07:08:37] 2026-02-06 12:08:16,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 07:08:37] 2026-02-06 12:08:36,340 | INFO     | PID=1266657 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 07:08:37] 2026-02-06 12:08:36,341 | INFO     | .. there are 30 such processes running
[2026-02-06 07:08:37] 2026-02-06 12:08:36,341 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 07:08:37] 2026-02-06 12:08:36,341 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 07:08:37] 2026-02-06 12:08:36,341 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 07:08:37] 2026-02-06 12:08:36,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 07:08:37] 2026-02-06 12:08:36,341 | INFO     | [monitor] control thread has ended
[2026-02-06 07:08:37] 2026-02-06 12:08:36,594 [wrapper] ==== pilot stdout END ====
[2026-02-06 07:08:37] 2026-02-06 12:08:36,634 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 07:08:37] 2026-02-06 12:08:36,671 [wrapper] pilotpid: 1266657
[2026-02-06 07:08:37] 2026-02-06 12:08:36,714 [wrapper] Pilot exit status: 0
[2026-02-06 07:08:37] 2026-02-06 12:08:36,844 [wrapper] pandaids: 7000906325 7000906325
[2026-02-06 07:08:37] 2026-02-06 12:08:37,142 [wrapper] cleanup supervisor_pilot 1775917 1266659
[2026-02-06 07:08:37] 2026-02-06 12:08:37,176 [wrapper] Test setup, not cleaning
[2026-02-06 07:08:37] 2026-02-06 12:08:37,196 [wrapper] apfmon messages muted
[2026-02-06 07:08:37] 2026-02-06 12:08:37,215 [wrapper] ==== wrapper stdout END ====
[2026-02-06 07:08:37] 2026-02-06 12:08:37,243 [wrapper] ==== wrapper stderr END ====
[2026-02-06 07:08:37]  *** Error codes and diagnostics ***
[2026-02-06 07:08:37]     "exeErrorCode": 0,
[2026-02-06 07:08:37]     "exeErrorDiag": "",
[2026-02-06 07:08:37]     "pilotErrorCode": 0,
[2026-02-06 07:08:37]     "pilotErrorDiag": "",
[2026-02-06 07:08:37]  *** Listing of results directory ***
[2026-02-06 07:08:37] total 1167024
[2026-02-06 07:08:37] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas    584627 Feb  5 23:07 pilot3.tar.gz
[2026-02-06 07:08:37] -rwx------. 1 boincer umatlas     36322 Feb  5 23:11 runpilot2-wrapper.sh
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas      5111 Feb  5 23:16 queuedata.json
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas       100 Feb  6 04:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 07:08:37] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  6 04:28 run_atlas
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas       105 Feb  6 04:28 job.xml
[2026-02-06 07:08:37] -rw-r--r--. 3 boincer umatlas 502211256 Feb  6 04:28 EVNT.48317949._000237.pool.root.1
[2026-02-06 07:08:37] -rw-r--r--. 3 boincer umatlas 502211256 Feb  6 04:28 ATLAS.root_0
[2026-02-06 07:08:37] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 04:28 start_atlas.sh
[2026-02-06 07:08:37] drwxrwx--x. 2 boincer umatlas      4096 Feb  6 04:28 shared
[2026-02-06 07:08:37] -rw-r--r--. 2 boincer umatlas    597951 Feb  6 04:28 input.tar.gz
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas         0 Feb  6 04:28 boinc_lockfile
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas   1513144 Feb  6 04:28 agis_ddmendpoints.agis.ALL.json
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas      2523 Feb  6 05:13 pandaJob.out
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas        57 Feb  6 05:13 setup.sh.local
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas   1007461 Feb  6 05:13 agis_schedconf.cvmfs.json
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas       432 Feb  6 05:13 workernode_map.json
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas      7184 Feb  6 07:02 init_data.xml
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas 184160348 Feb  6 07:06 HITS.48317952._012525.pool.root.1
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas       530 Feb  6 07:06 boinc_task_state.xml
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas      1049 Feb  6 07:07 memory_monitor_summary.json
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas    343100 Feb  6 07:07 log.48317952._012525.job.log.tgz.1
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas      6362 Feb  6 07:08 heartbeat.json
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas        96 Feb  6 07:08 pilot_heartbeat.json
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas        27 Feb  6 07:08 wrapper_checkpoint.txt
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas      8192 Feb  6 07:08 boinc_mmap_file
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas       823 Feb  6 07:08 pilotlog.txt
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas    907649 Feb  6 07:08 log.48317952._012525.job.log.1
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas       357 Feb  6 07:08 output.list
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas       620 Feb  6 07:08 runtime_log
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas   1269760 Feb  6 07:08 result.tar.gz
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas      9426 Feb  6 07:08 runtime_log.err
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas       782 Feb  6 07:08 Hp8MDm8MS88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbQXKDmPB12Ym.diag
[2026-02-06 07:08:37] -rw-r--r--. 1 boincer umatlas     23182 Feb  6 07:08 stderr.txt
[2026-02-06 07:08:37] HITS file was successfully produced:
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas 184160348 Feb  6 07:06 shared/HITS.pool.root.1
[2026-02-06 07:08:37]  *** Contents of shared directory: ***
[2026-02-06 07:08:37] total 672140
[2026-02-06 07:08:37] -rw-r--r--. 3 boincer umatlas 502211256 Feb  6 04:28 ATLAS.root_0
[2026-02-06 07:08:37] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 04:28 start_atlas.sh
[2026-02-06 07:08:37] -rw-r--r--. 2 boincer umatlas    597951 Feb  6 04:28 input.tar.gz
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas 184160348 Feb  6 07:06 HITS.pool.root.1
[2026-02-06 07:08:37] -rw-------. 1 boincer umatlas   1269760 Feb  6 07:08 result.tar.gz
07:08:39 (1236379): run_atlas exited; CPU time 25869.974858
07:08:39 (1236379): called boinc_finish(0)

</stderr_txt>
]]>

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