Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
02:40:08 (332500): wrapper (7.7.26015): starting
02:40:08 (332500): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 02:40:08] Arguments: --nthreads 8
[2026-02-06 02:40:08] Threads: 8
[2026-02-06 02:40:08] Checking for CVMFS
[2026-02-06 02:40:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 02:40:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 02:40:08] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 02:40:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 02:40:08] 2.13.3.0 10900 309 50516 155934 3 188 6069167 20480000 2722 130560 0 955636 99.997 11109 503 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-06 02:40:08] CVMFS is ok
[2026-02-06 02:40:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 02:40:08] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-06 02:40:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-06 02:40:08] Further information can be found at the LHC@home message board.
[2026-02-06 02:40:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 02:40:08] Checking for apptainer binary...
[2026-02-06 02:40:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 02:40:08] Running /usr/bin/apptainer --version
[2026-02-06 02:40:08] apptainer version 1.4.4
[2026-02-06 02:40:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 02:40:08] garage
[2026-02-06 02:40:08] apptainer works
[2026-02-06 02:40:08] Set ATHENA_PROC_NUMBER=8
[2026-02-06 02:40:08] Set ATHENA_CORE_NUMBER=8
[2026-02-06 02:40:08] Starting ATLAS job with PandaID=6996349144
[2026-02-06 02:40:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 03:20:49]  *** The last 200 lines of the pilot log: ***
[2026-02-06 03:20:49]  guid=9039b210-c2be-40ed-985e-0faf64e4847e
[2026-02-06 03:20:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-06 03:20:49]  is_altstaged=None
[2026-02-06 03:20:49]  is_tar=False
[2026-02-06 03:20:49]  lfn=log.48442098._002627.job.log.tgz.1
[2026-02-06 03:20:49]  mtime=0
[2026-02-06 03:20:49]  protocol_id=None
[2026-02-06 03:20:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-06 03:20:49]  replicas=None
[2026-02-06 03:20:49]  scope=mc23_13p6TeV
[2026-02-06 03:20:49]  status=None
[2026-02-06 03:20:49]  status_code=0
[2026-02-06 03:20:49]  storage_token=
[2026-02-06 03:20:49]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6996349144/log.48442098._002627.job.log.tgz.1
[2026-02-06 03:20:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/2f/log.48442098._002627.job.log.tgz.1
[2026-02-06 03:20:49]  workdir=None
[2026-02-06 03:20:49] ]
[2026-02-06 03:20:49] 2026-02-06 10:20:15,396 | INFO     | transferring file log.48442098._002627.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6996349144/log.48442098._002627.job.log.tgz.1 to /var/lib/boinc
[2026-02-06 03:20:49] 2026-02-06 10:20:15,396 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6996349144/log.48442098._002627.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.484420
[2026-02-06 03:20:49] 2026-02-06 10:20:15,402 | INFO     | adding to output.list: log.48442098._002627.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/2f/log.48442098._002627.job.log.tg
[2026-02-06 03:20:49] 2026-02-06 10:20:15,403 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-06 03:20:49] 2026-02-06 10:20:15,403 | INFO     | summary of transferred files:
[2026-02-06 03:20:49] 2026-02-06 10:20:15,403 | INFO     |  -- lfn=log.48442098._002627.job.log.tgz.1, status_code=0, status=transferred
[2026-02-06 03:20:49] 2026-02-06 10:20:15,403 | INFO     | stage-out finished correctly
[2026-02-06 03:20:49] 2026-02-06 10:20:16,639 | INFO     | time since job start (2397s) is within the limit (349056.0s)
[2026-02-06 03:20:49] 2026-02-06 10:20:16,804 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-06 03:20:49] 2026-02-06 10:20:16,964 | INFO     | job 6996349144 has state=finished
[2026-02-06 03:20:49] 2026-02-06 10:20:16,964 | INFO     | preparing for final server update for job 6996349144 in state='finished'
[2026-02-06 03:20:49] 2026-02-06 10:20:17,186 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,186 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-6996349144/jobReport.json
[2026-02-06 03:20:49] 2026-02-06 10:20:17,188 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-02-06 03:20:49] 2026-02-06 10:20:17,188 | INFO     | this job has now completed (state=finished)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,188 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,188 | INFO     | log transfer has been attempted: DONE
[2026-02-06 03:20:49] 2026-02-06 10:20:17,188 | INFO     | job 6996349144 has finished - writing final server update
[2026-02-06 03:20:49] 2026-02-06 10:20:17,188 | INFO     | total number of processed events: 400 (read)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,191 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6996349144/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,191 | INFO     | extracted standard info from prmon json
[2026-02-06 03:20:49] 2026-02-06 10:20:17,191 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 03:20:49] 2026-02-06 10:20:17,191 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 03:20:49] 2026-02-06 10:20:17,191 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 03:20:49] 2026-02-06 10:20:17,191 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 03:20:49] 2026-02-06 10:20:17,191 | INFO     | fitting pss+swap vs Time
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | sum of square deviations: 10150888.0
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | sum of deviations: -10725355.5
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | mean x: 1770372086.5
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | mean y: 2505537.96875
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | intersect: 1873067994.6709864
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | chi2: 0.0021453269569916065
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | current memory leak: -1.06 B/s (using 32 data points, chi2=0.00)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | could have reported an average CPU frequency of 4426 MHz (5 samples)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | ..............................
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | . Timing measurements:
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | . get job = 0 s
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | . initial setup = 6 s
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | . payload setup = 2 s
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | . stage-in = 0 s
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | . payload execution = 2378 s
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | . stage-out = 0 s
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | . log creation = 0 s
[2026-02-06 03:20:49] 2026-02-06 10:20:17,192 | INFO     | ..............................
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | 
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | job summary report
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | --------------------------------------------------
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | PanDA job id: 6996349144
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | task id: 48442098
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | errors: (none)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | pilot state: finished 
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | transexitcode: 0
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | exeerrorcode: 0
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | exeerrordiag: 
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | exitcode: 0
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | exitmsg: OK
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | cpuconsumptiontime: 17693 s
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | nevents: 400
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | neventsw: 0
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | pid: 340930
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | pgrp: 340930
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | corecount: 8
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | event service: False
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | sizes: {0: 2282613, 1: 2283130, 11: 2283130, 2385: 2317332, 2387: 2317558}
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | --------------------------------------------------
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | 
[2026-02-06 03:20:49] 2026-02-06 10:20:17,220 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-02-06 03:20:49] 2026-02-06 10:20:17,228 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,228 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,228 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,228 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | job 6996349144 has completed (purged errors)
[2026-02-06 03:20:49] 2026-02-06 10:20:17,229 | INFO     | overall cleanup function is called
[2026-02-06 03:20:49] 2026-02-06 10:20:17,702 | INFO     | PID=336356 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-06 03:20:49] 2026-02-06 10:20:17,702 | INFO     | .. there are 4 such processes running
[2026-02-06 03:20:49] 2026-02-06 10:20:18,235 | INFO     | --- collectZombieJob: --- 10, [340930]
[2026-02-06 03:20:49] 2026-02-06 10:20:18,235 | INFO     | zombie collector waiting for pid 340930
[2026-02-06 03:20:49] 2026-02-06 10:20:18,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 03:20:49] 2026-02-06 10:20:18,235 | INFO     | collected zombie processes
[2026-02-06 03:20:49] 2026-02-06 10:20:18,235 | INFO     | will attempt to kill all subprocesses of pid=340930
[2026-02-06 03:20:49] 2026-02-06 10:20:18,278 | INFO     | process IDs to be killed: [340930] (in reverse order)
[2026-02-06 03:20:49] 2026-02-06 10:20:18,300 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 03:20:49] 2026-02-06 10:20:18,300 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 03:20:49] 2026-02-06 10:20:18,301 | INFO     | did not find any defunct processes belonging to 340930
[2026-02-06 03:20:49] 2026-02-06 10:20:18,303 | INFO     | did not find any defunct processes belonging to 340930
[2026-02-06 03:20:49] 2026-02-06 10:20:18,303 | INFO     | ready for new job
[2026-02-06 03:20:49] 2026-02-06 10:20:18,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 03:20:49] 2026-02-06 10:20:18,303 | INFO     | **************************************
[2026-02-06 03:20:49] 2026-02-06 10:20:18,303 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 03:20:49] 2026-02-06 10:20:18,303 | INFO     | **************************************
[2026-02-06 03:20:49] 2026-02-06 10:20:18,303 | INFO     | 
[2026-02-06 03:20:49] 2026-02-06 10:20:18,304 | INFO     | architecture information:
[2026-02-06 03:20:49] 2026-02-06 10:20:18,304 | INFO     | executing command: cat /etc/os-release
[2026-02-06 03:20:49] 2026-02-06 10:20:18,310 | INFO     | cat /etc/os-release:
[2026-02-06 03:20:49] NAME="CentOS Linux"
[2026-02-06 03:20:49] VERSION="7 (Core)"
[2026-02-06 03:20:49] ID="centos"
[2026-02-06 03:20:49] ID_LIKE="rhel fedora"
[2026-02-06 03:20:49] VERSION_ID="7"
[2026-02-06 03:20:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 03:20:49] ANSI_COLOR="0;31"
[2026-02-06 03:20:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 03:20:49] HOME_URL="https://www.centos.org/"
[2026-02-06 03:20:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 03:20:49] 
[2026-02-06 03:20:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 03:20:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 03:20:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 03:20:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 03:20:49] 
[2026-02-06 03:20:49] 2026-02-06 10:20:18,310 | INFO     | **************************************
[2026-02-06 03:20:49] 2026-02-06 10:20:18,812 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | INFO     | sufficient remaining disk space (695675650048 B)
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | INFO     | update_server=False
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 03:20:49] 2026-02-06 10:20:18,818 | INFO     | aborting loop
[2026-02-06 03:20:49] 2026-02-06 10:20:19,680 | INFO     | all data control threads have been joined
[2026-02-06 03:20:49] 2026-02-06 10:20:19,823 | INFO     | [job] retrieve thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:19,824 | INFO     | [job] queue monitor thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:19,824 | INFO     | [job] job monitor thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:19,846 | INFO     | [payload] failed_post thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:19,872 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:20,015 | INFO     | [data] copytool_in thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:20,193 | INFO     | all job control threads have been joined
[2026-02-06 03:20:49] 2026-02-06 10:20:20,219 | INFO     | all payload control threads have been joined
[2026-02-06 03:20:49] 2026-02-06 10:20:20,532 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:20,685 | INFO     | [data] control thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:20,823 | INFO     | [data] copytool_out thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:20,853 | INFO     | [payload] validate_post thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:21,147 | INFO     | [job] validate thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:21,199 | INFO     | [job] control thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:21,224 | INFO     | [payload] control thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:21,269 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:22,823 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:22,908 | INFO     | [monitor] cgroup control has ended
[2026-02-06 03:20:49] 2026-02-06 10:20:29,567 | INFO     | job.realtimelogging is not enabled
[2026-02-06 03:20:49] 2026-02-06 10:20:30,572 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 03:20:49] 2026-02-06 10:20:31,092 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133440258287424)>', '<ExcThread(monitor, started 133439902693120)>']
[2026-02-06 03:20:49] 2026-02-06 10:20:36,094 | INFO     | all workflow threads have been joined
[2026-02-06 03:20:49] 2026-02-06 10:20:36,094 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 03:20:49] 2026-02-06 10:20:36,094 | INFO     | traces error code: 0
[2026-02-06 03:20:49] 2026-02-06 10:20:36,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 03:20:49] 2026-02-06 10:20:49,811 | INFO     | PID=336356 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-06 03:20:49] 2026-02-06 10:20:49,811 | INFO     | .. there are 4 such processes running
[2026-02-06 03:20:49] 2026-02-06 10:20:49,811 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 03:20:49] 2026-02-06 10:20:49,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 03:20:49] 2026-02-06 10:20:49,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 03:20:49] 2026-02-06 10:20:49,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 03:20:49] 2026-02-06 10:20:49,811 | CRITICAL | thread 'MainThread' is not alive
[2026-02-06 03:20:49] 2026-02-06 10:20:49,811 | INFO     | [monitor] control thread has ended
[2026-02-06 03:20:49] 2026-02-06 10:20:49,844 [wrapper] ==== pilot stdout END ====
[2026-02-06 03:20:49] 2026-02-06 10:20:49,845 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 03:20:49] 2026-02-06 10:20:49,846 [wrapper] pilotpid: 336356
[2026-02-06 03:20:49] 2026-02-06 10:20:49,847 [wrapper] Pilot exit status: 0
[2026-02-06 03:20:49] 2026-02-06 10:20:49,850 [wrapper] pandaids: 6996349144
[2026-02-06 03:20:49] 2026-02-06 10:20:49,866 [wrapper] cleanup supervisor_pilot  345886 336357
[2026-02-06 03:20:49] 2026-02-06 10:20:49,867 [wrapper] Test setup, not cleaning
[2026-02-06 03:20:49] 2026-02-06 10:20:49,867 [wrapper] apfmon messages muted
[2026-02-06 03:20:49] 2026-02-06 10:20:49,868 [wrapper] ==== wrapper stdout END ====
[2026-02-06 03:20:49] 2026-02-06 10:20:49,869 [wrapper] ==== wrapper stderr END ====
[2026-02-06 03:20:49]  *** Error codes and diagnostics ***
[2026-02-06 03:20:49]     "exeErrorCode": 0,
[2026-02-06 03:20:49]     "exeErrorDiag": "",
[2026-02-06 03:20:49]     "pilotErrorCode": 0,
[2026-02-06 03:20:49]     "pilotErrorDiag": "",
[2026-02-06 03:20:49]  *** Listing of results directory ***
[2026-02-06 03:20:49] total 667716
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc    584627 Feb  5 21:58 pilot3.tar.gz
[2026-02-06 03:20:49] -rwx------ 1 boinc boinc     36322 Feb  5 22:09 runpilot2-wrapper.sh
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc      5111 Feb  5 22:09 queuedata.json
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc       100 Feb  6 02:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 03:20:49] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 02:40 run_atlas
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc       105 Feb  6 02:40 job.xml
[2026-02-06 03:20:49] -rw-r--r-- 2 boinc boinc 496014625 Feb  6 02:40 EVNT.48442096._000053.pool.root.1
[2026-02-06 03:20:49] -rw-r--r-- 2 boinc boinc     15845 Feb  6 02:40 start_atlas.sh
[2026-02-06 03:20:49] drwxrwx--x 2 boinc boinc      4096 Feb  6 02:40 shared
[2026-02-06 03:20:49] -rw-r--r-- 2 boinc boinc    597952 Feb  6 02:40 input.tar.gz
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc      9470 Feb  6 02:40 init_data.xml
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc         0 Feb  6 02:40 boinc_setup_complete
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc         0 Feb  6 02:40 boinc_lockfile
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc      2529 Feb  6 02:40 pandaJob.out
[2026-02-06 03:20:49] -rw------- 1 boinc boinc   1007453 Feb  6 02:40 agis_schedconf.cvmfs.json
[2026-02-06 03:20:49] -rw------- 1 boinc boinc   1513144 Feb  6 02:40 agis_ddmendpoints.agis.ALL.json
[2026-02-06 03:20:49] -rw------- 1 boinc boinc       416 Feb  6 02:40 workernode_map.json
[2026-02-06 03:20:49] drwx------ 5 boinc boinc      4096 Feb  6 02:40 pilot3
[2026-02-06 03:20:49] -rw------- 1 boinc boinc 182388667 Feb  6 03:19 HITS.48442098._002627.pool.root.1
[2026-02-06 03:20:49] -rw------- 1 boinc boinc      1022 Feb  6 03:20 memory_monitor_summary.json
[2026-02-06 03:20:49] -rw------- 1 boinc boinc    311681 Feb  6 03:20 log.48442098._002627.job.log.tgz.1
[2026-02-06 03:20:49] -rw------- 1 boinc boinc      6271 Feb  6 03:20 heartbeat.json
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc      8192 Feb  6 03:20 boinc_mmap_file
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc        27 Feb  6 03:20 wrapper_checkpoint.txt
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc       530 Feb  6 03:20 boinc_task_state.xml
[2026-02-06 03:20:49] -rw------- 1 boinc boinc       891 Feb  6 03:20 pilotlog.txt
[2026-02-06 03:20:49] -rw------- 1 boinc boinc        95 Feb  6 03:20 pilot_heartbeat.json
[2026-02-06 03:20:49] -rw------- 1 boinc boinc    387011 Feb  6 03:20 log.48442098._002627.job.log.1
[2026-02-06 03:20:49] -rw------- 1 boinc boinc       357 Feb  6 03:20 output.list
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc       620 Feb  6 03:20 runtime_log
[2026-02-06 03:20:49] -rw------- 1 boinc boinc    716800 Feb  6 03:20 result.tar.gz
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc      8913 Feb  6 03:20 runtime_log.err
[2026-02-06 03:20:49] -rw------- 1 boinc boinc       652 Feb  6 03:20 BIeMDm3GT88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmh0XKDm7swLMo.diag
[2026-02-06 03:20:49] -rw-r--r-- 1 boinc boinc     21443 Feb  6 03:20 stderr.txt
[2026-02-06 03:20:49] HITS file was successfully produced:
[2026-02-06 03:20:49] -rw------- 1 boinc boinc 182388667 Feb  6 03:19 shared/HITS.pool.root.1
[2026-02-06 03:20:49]  *** Contents of shared directory: ***
[2026-02-06 03:20:49] total 663816
[2026-02-06 03:20:49] -rw-r--r-- 2 boinc boinc 496014625 Feb  6 02:40 ATLAS.root_0
[2026-02-06 03:20:49] -rw-r--r-- 2 boinc boinc     15845 Feb  6 02:40 start_atlas.sh
[2026-02-06 03:20:49] -rw-r--r-- 2 boinc boinc    597952 Feb  6 02:40 input.tar.gz
[2026-02-06 03:20:49] -rw------- 1 boinc boinc 182388667 Feb  6 03:19 HITS.pool.root.1
[2026-02-06 03:20:49] -rw------- 1 boinc boinc    716800 Feb  6 03:20 result.tar.gz
03:20:51 (332500): run_atlas exited; CPU time 17702.551397
03:20:51 (332500): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN