Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:44:00 (1729205): wrapper (7.7.26015): starting
18:44:00 (1729205): wrapper: running run_atlas (--nthreads 3)
[2026-02-06 18:44:00] Arguments: --nthreads 3
[2026-02-06 18:44:00] Threads: 3
[2026-02-06 18:44:00] Checking for CVMFS
[2026-02-06 18:44:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 18:44:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 18:44:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 18:44:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 18:44:01] 2.9.2.0 1622115 615 64500 155955 2 50 25825441 36864000 0 130560 0 280088 99.977 27651 27431 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 18:44:01] CVMFS is ok
[2026-02-06 18:44:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 18:44:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 18:44:01] Further information can be found at the LHC@home message board.
[2026-02-06 18:44:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 18:44:01] Checking for apptainer binary...
[2026-02-06 18:44:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 18:44:01] Running /usr/bin/apptainer --version
[2026-02-06 18:44:01] apptainer version 1.4.1-1.1
[2026-02-06 18:44:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 18:44:01] magicA246a
[2026-02-06 18:44:01] apptainer works
[2026-02-06 18:44:01] Set ATHENA_PROC_NUMBER=3
[2026-02-06 18:44:01] Set ATHENA_CORE_NUMBER=3
[2026-02-06 18:44:01] Starting ATLAS job with PandaID=6996531822
[2026-02-06 18:44:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 20:03:32]  *** The last 200 lines of the pilot log: ***
[2026-02-06 20:03:32] 2026-02-06 19:02:59,918 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 20:03:32] 2026-02-06 19:02:59,918 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 20:03:32] 2026-02-06 19:02:59,918 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 20:03:32] 2026-02-06 19:02:59,918 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 20:03:32] 2026-02-06 19:02:59,918 | INFO     | job 6996531822 has completed (purged errors)
[2026-02-06 20:03:32] 2026-02-06 19:02:59,919 | INFO     | overall cleanup function is called
[2026-02-06 20:03:32] 2026-02-06 19:03:00,924 | INFO     | --- collectZombieJob: --- 10, [1737673]
[2026-02-06 20:03:32] 2026-02-06 19:03:00,925 | INFO     | zombie collector waiting for pid 1737673
[2026-02-06 20:03:32] 2026-02-06 19:03:00,925 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 20:03:32] 2026-02-06 19:03:00,925 | INFO     | collected zombie processes
[2026-02-06 20:03:32] 2026-02-06 19:03:00,925 | INFO     | will attempt to kill all subprocesses of pid=1737673
[2026-02-06 20:03:32] 2026-02-06 19:03:00,981 | INFO     | process IDs to be killed: [1737673] (in reverse order)
[2026-02-06 20:03:32] 2026-02-06 19:03:01,010 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 20:03:32] 2026-02-06 19:03:01,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 20:03:32] 2026-02-06 19:03:01,011 | INFO     | did not find any defunct processes belonging to 1737673
[2026-02-06 20:03:32] 2026-02-06 19:03:01,013 | INFO     | did not find any defunct processes belonging to 1737673
[2026-02-06 20:03:32] 2026-02-06 19:03:01,013 | INFO     | ready for new job
[2026-02-06 20:03:32] 2026-02-06 19:03:01,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 20:03:32] 2026-02-06 19:03:01,014 | INFO     | **************************************
[2026-02-06 20:03:32] 2026-02-06 19:03:01,014 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 20:03:32] 2026-02-06 19:03:01,014 | INFO     | **************************************
[2026-02-06 20:03:32] 2026-02-06 19:03:01,014 | INFO     | 
[2026-02-06 20:03:32] 2026-02-06 19:03:01,014 | INFO     | architecture information:
[2026-02-06 20:03:32] 2026-02-06 19:03:01,014 | INFO     | executing command: cat /etc/os-release
[2026-02-06 20:03:32] 2026-02-06 19:03:01,023 | INFO     | cat /etc/os-release:
[2026-02-06 20:03:32] NAME="CentOS Linux"
[2026-02-06 20:03:32] VERSION="7 (Core)"
[2026-02-06 20:03:32] ID="centos"
[2026-02-06 20:03:32] ID_LIKE="rhel fedora"
[2026-02-06 20:03:32] VERSION_ID="7"
[2026-02-06 20:03:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 20:03:32] ANSI_COLOR="0;31"
[2026-02-06 20:03:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 20:03:32] HOME_URL="https://www.centos.org/"
[2026-02-06 20:03:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 20:03:32] 
[2026-02-06 20:03:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 20:03:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 20:03:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 20:03:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 20:03:32] 
[2026-02-06 20:03:32] 2026-02-06 19:03:01,024 | INFO     | **************************************
[2026-02-06 20:03:32] 2026-02-06 19:03:01,527 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 20:03:32] 2026-02-06 19:03:01,538 | INFO     | sufficient remaining disk space (275795410944 B)
[2026-02-06 20:03:32] 2026-02-06 19:03:01,539 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 20:03:32] 2026-02-06 19:03:01,539 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 20:03:32] 2026-02-06 19:03:01,539 | INFO     | update_server=False
[2026-02-06 20:03:32] 2026-02-06 19:03:01,539 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 20:03:32] 2026-02-06 19:03:01,539 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 20:03:32] 2026-02-06 19:03:01,539 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 20:03:32] 2026-02-06 19:03:01,623 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-06 20:03:32] 2026-02-06 19:03:01,623 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-06 20:03:32] 2026-02-06 19:03:01,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 20:03:32] 2026-02-06 19:03:01,623 | INFO     | will abort loop
[2026-02-06 20:03:32] 2026-02-06 19:03:02,543 | INFO     | [job] queue monitor thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:02,543 | INFO     | [job] retrieve thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:02,547 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:02,585 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:02,628 | INFO     | [job] job monitor thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:02,635 | INFO     | all data control threads have been joined
[2026-02-06 20:03:32] 2026-02-06 19:03:02,709 | INFO     | [data] copytool_in thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:02,723 | INFO     | all payload control threads have been joined
[2026-02-06 20:03:32] 2026-02-06 19:03:03,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 20:03:32] 2026-02-06 19:03:03,230 | INFO     | all job control threads have been joined
[2026-02-06 20:03:32] 2026-02-06 19:03:03,245 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:03,545 | INFO     | [data] copytool_out thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:03,641 | INFO     | [data] control thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:03,729 | INFO     | [payload] control thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:03,777 | INFO     | [payload] validate_post thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:03,912 | INFO     | [job] validate thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:04,119 | INFO     | [payload] failed_post thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:04,235 | INFO     | [job] control thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:07,009 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:12,567 | INFO     | job.realtimelogging is not enabled
[2026-02-06 20:03:32] 2026-02-06 19:03:13,573 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 20:03:32] 2026-02-06 19:03:15,360 | INFO     | [monitor] cgroup control has ended
[2026-02-06 20:03:32] 2026-02-06 19:03:17,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140684872472384)>', '<ExcThread(monitor, started 140684363278080)>']
[2026-02-06 20:03:32] 2026-02-06 19:03:22,223 | INFO     | all workflow threads have been joined
[2026-02-06 20:03:32] 2026-02-06 19:03:22,223 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 20:03:32] 2026-02-06 19:03:22,223 | INFO     | traces error code: 0
[2026-02-06 20:03:32] 2026-02-06 19:03:22,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 20:03:32] 2026-02-06 19:03:32,202 | INFO     | PID=1733245 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 20:03:32] 2026-02-06 19:03:32,202 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 20:03:32] 2026-02-06 19:03:32,202 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 20:03:32] 2026-02-06 19:03:32,202 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 20:03:32] 2026-02-06 19:03:32,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 20:03:32] 2026-02-06 19:03:32,202 | INFO     | [monitor] control thread has ended
[2026-02-06 20:03:32] 2026-02-06 19:03:32,252 [wrapper] ==== pilot stdout END ====
[2026-02-06 20:03:32] 2026-02-06 19:03:32,254 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 20:03:32] 2026-02-06 19:03:32,256 [wrapper] pilotpid: 1733245
[2026-02-06 20:03:32] 2026-02-06 19:03:32,259 [wrapper] Pilot exit status: 0
[2026-02-06 20:03:32] 2026-02-06 19:03:32,266 [wrapper] pandaids: 6996531822
[2026-02-06 20:03:32] 2026-02-06 19:03:32,284 [wrapper] cleanup supervisor_pilot 1743832 1733246
[2026-02-06 20:03:32] 2026-02-06 19:03:32,287 [wrapper] Test setup, not cleaning
[2026-02-06 20:03:32] 2026-02-06 19:03:32,289 [wrapper] apfmon messages muted
[2026-02-06 20:03:32] 2026-02-06 19:03:32,292 [wrapper] ==== wrapper stdout END ====
[2026-02-06 20:03:32] 2026-02-06 19:03:32,294 [wrapper] ==== wrapper stderr END ====
[2026-02-06 20:03:32]  *** Error codes and diagnostics ***
[2026-02-06 20:03:32]     "exeErrorCode": 0,
[2026-02-06 20:03:32]     "exeErrorDiag": "",
[2026-02-06 20:03:32]     "pilotErrorCode": 0,
[2026-02-06 20:03:32]     "pilotErrorDiag": "",
[2026-02-06 20:03:32]  *** Listing of results directory ***
[2026-02-06 20:03:32] total 672016
[2026-02-06 20:03:32] -rwx------ 1 boinc boinc     36322 Feb  6 08:42 runpilot2-wrapper.sh
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc    584627 Feb  6 08:44 pilot3.tar.gz
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc      5111 Feb  6 08:46 queuedata.json
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc       100 Feb  6 18:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 20:03:32] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 18:44 run_atlas
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc       105 Feb  6 18:44 job.xml
[2026-02-06 20:03:32] -rw-r--r-- 2 boinc boinc 498247430 Feb  6 18:44 EVNT.48442096._000066.pool.root.1
[2026-02-06 20:03:32] -rw-r--r-- 2 boinc boinc    597951 Feb  6 18:44 input.tar.gz
[2026-02-06 20:03:32] -rw-r--r-- 2 boinc boinc     15845 Feb  6 18:44 start_atlas.sh
[2026-02-06 20:03:32] drwxrwx--x 2 boinc boinc      4096 Feb  6 18:44 shared
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc         0 Feb  6 18:44 boinc_setup_complete
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc      6447 Feb  6 18:44 init_data.xml
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc         0 Feb  6 18:44 boinc_lockfile
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc      2527 Feb  6 18:44 pandaJob.out
[2026-02-06 20:03:32] -rw------- 1 boinc boinc   1009504 Feb  6 18:44 agis_schedconf.cvmfs.json
[2026-02-06 20:03:32] -rw------- 1 boinc boinc   1513088 Feb  6 18:44 agis_ddmendpoints.agis.ALL.json
[2026-02-06 20:03:32] -rw------- 1 boinc boinc       428 Feb  6 18:44 workernode_map.json
[2026-02-06 20:03:32] drwx------ 5 boinc boinc      4096 Feb  6 18:44 pilot3
[2026-02-06 20:03:32] -rw------- 1 boinc boinc        95 Feb  6 20:02 pilot_heartbeat.json
[2026-02-06 20:03:32] -rw------- 1 boinc boinc 184099801 Feb  6 20:02 HITS.48442098._003253.pool.root.1
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc       530 Feb  6 20:02 boinc_task_state.xml
[2026-02-06 20:03:32] -rw------- 1 boinc boinc      1023 Feb  6 20:02 memory_monitor_summary.json
[2026-02-06 20:03:32] -rw------- 1 boinc boinc    238131 Feb  6 20:02 log.48442098._003253.job.log.tgz.1
[2026-02-06 20:03:32] -rw------- 1 boinc boinc      6317 Feb  6 20:02 heartbeat.json
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc      8192 Feb  6 20:03 boinc_mmap_file
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc        27 Feb  6 20:03 wrapper_checkpoint.txt
[2026-02-06 20:03:32] -rw------- 1 boinc boinc       747 Feb  6 20:03 pilotlog.txt
[2026-02-06 20:03:32] -rw------- 1 boinc boinc    695634 Feb  6 20:03 log.48442098._003253.job.log.1
[2026-02-06 20:03:32] -rw------- 1 boinc boinc       357 Feb  6 20:03 output.list
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc       620 Feb  6 20:03 runtime_log
[2026-02-06 20:03:32] -rw------- 1 boinc boinc    952320 Feb  6 20:03 result.tar.gz
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc      8916 Feb  6 20:03 runtime_log.err
[2026-02-06 20:03:32] -rw------- 1 boinc boinc       661 Feb  6 20:03 PzfLDmAfV88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm4WYKDmQ1EpOo.diag
[2026-02-06 20:03:32] -rw-r--r-- 1 boinc boinc     11535 Feb  6 20:03 stderr.txt
[2026-02-06 20:03:32] HITS file was successfully produced:
[2026-02-06 20:03:32] -rw------- 1 boinc boinc 184099801 Feb  6 20:02 shared/HITS.pool.root.1
[2026-02-06 20:03:32]  *** Contents of shared directory: ***
[2026-02-06 20:03:32] total 667900
[2026-02-06 20:03:32] -rw-r--r-- 2 boinc boinc 498247430 Feb  6 18:44 ATLAS.root_0
[2026-02-06 20:03:32] -rw-r--r-- 2 boinc boinc    597951 Feb  6 18:44 input.tar.gz
[2026-02-06 20:03:32] -rw-r--r-- 2 boinc boinc     15845 Feb  6 18:44 start_atlas.sh
[2026-02-06 20:03:32] -rw------- 1 boinc boinc 184099801 Feb  6 20:02 HITS.pool.root.1
[2026-02-06 20:03:32] -rw------- 1 boinc boinc    952320 Feb  6 20:03 result.tar.gz
20:03:33 (1729205): run_atlas exited; CPU time 13524.681365
20:03:33 (1729205): called boinc_finish(0)

</stderr_txt>
]]>

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