Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:09:34 (2691969): wrapper (7.7.26015): starting
20:09:34 (2691969): wrapper: running run_atlas (--nthreads 2)
[2026-02-06 20:09:34] Arguments: --nthreads 2
[2026-02-06 20:09:34] Threads: 2
[2026-02-06 20:09:34] Checking for CVMFS
[2026-02-06 20:09:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 20:09:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 20:09:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 20:09:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 20:09:34] 2.9.2.0 2622099 743 53876 155957 2 49 22663589 36864001 0 130560 0 204893 99.968 32950 16223 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 20:09:34] CVMFS is ok
[2026-02-06 20:09:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 20:09:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 20:09:34] Further information can be found at the LHC@home message board.
[2026-02-06 20:09:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 20:09:34] Checking for apptainer binary...
[2026-02-06 20:09:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 20:09:34] Running /usr/bin/apptainer --version
[2026-02-06 20:09:34] apptainer version 1.4.1-1.1
[2026-02-06 20:09:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 20:09:34] thA314b
[2026-02-06 20:09:34] apptainer works
[2026-02-06 20:09:34] Set ATHENA_PROC_NUMBER=2
[2026-02-06 20:09:34] Set ATHENA_CORE_NUMBER=2
[2026-02-06 20:09:34] Starting ATLAS job with PandaID=6996410308
[2026-02-06 20:09:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 23:01:16]  *** The last 200 lines of the pilot log: ***
[2026-02-06 23:01:16] 2026-02-06 22:00:48,176 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 23:01:16] 2026-02-06 22:00:48,176 | INFO     | job 6996410308 has completed (purged errors)
[2026-02-06 23:01:16] 2026-02-06 22:00:48,176 | INFO     | overall cleanup function is called
[2026-02-06 23:01:16] 2026-02-06 22:00:49,012 | INFO     | PID=2695992 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 23:01:16] 2026-02-06 22:00:49,182 | INFO     | --- collectZombieJob: --- 10, [2700398]
[2026-02-06 23:01:16] 2026-02-06 22:00:49,183 | INFO     | zombie collector waiting for pid 2700398
[2026-02-06 23:01:16] 2026-02-06 22:00:49,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 23:01:16] 2026-02-06 22:00:49,183 | INFO     | collected zombie processes
[2026-02-06 23:01:16] 2026-02-06 22:00:49,183 | INFO     | will attempt to kill all subprocesses of pid=2700398
[2026-02-06 23:01:16] 2026-02-06 22:00:49,256 | INFO     | process IDs to be killed: [2700398] (in reverse order)
[2026-02-06 23:01:16] 2026-02-06 22:00:49,276 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 23:01:16] 2026-02-06 22:00:49,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 23:01:16] 2026-02-06 22:00:49,278 | INFO     | did not find any defunct processes belonging to 2700398
[2026-02-06 23:01:16] 2026-02-06 22:00:49,279 | INFO     | did not find any defunct processes belonging to 2700398
[2026-02-06 23:01:16] 2026-02-06 22:00:49,279 | INFO     | ready for new job
[2026-02-06 23:01:16] 2026-02-06 22:00:49,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 23:01:16] 2026-02-06 22:00:49,279 | INFO     | **************************************
[2026-02-06 23:01:16] 2026-02-06 22:00:49,279 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 23:01:16] 2026-02-06 22:00:49,279 | INFO     | **************************************
[2026-02-06 23:01:16] 2026-02-06 22:00:49,279 | INFO     | 
[2026-02-06 23:01:16] 2026-02-06 22:00:49,280 | INFO     | architecture information:
[2026-02-06 23:01:16] 2026-02-06 22:00:49,280 | INFO     | executing command: cat /etc/os-release
[2026-02-06 23:01:16] 2026-02-06 22:00:49,289 | INFO     | cat /etc/os-release:
[2026-02-06 23:01:16] NAME="CentOS Linux"
[2026-02-06 23:01:16] VERSION="7 (Core)"
[2026-02-06 23:01:16] ID="centos"
[2026-02-06 23:01:16] ID_LIKE="rhel fedora"
[2026-02-06 23:01:16] VERSION_ID="7"
[2026-02-06 23:01:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 23:01:16] ANSI_COLOR="0;31"
[2026-02-06 23:01:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 23:01:16] HOME_URL="https://www.centos.org/"
[2026-02-06 23:01:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 23:01:16] 
[2026-02-06 23:01:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 23:01:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 23:01:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 23:01:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 23:01:16] 
[2026-02-06 23:01:16] 2026-02-06 22:00:49,289 | INFO     | **************************************
[2026-02-06 23:01:16] 2026-02-06 22:00:49,306 | WARNING  | process 2700398 can no longer be monitored (due to stat problems) - aborting
[2026-02-06 23:01:16] 2026-02-06 22:00:49,329 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 23:01:16] 2026-02-06 22:00:49,356 | INFO     | number of running child processes to parent process 2700398: 1
[2026-02-06 23:01:16] 2026-02-06 22:00:49,356 | INFO     | maximum number of monitored processes: 6
[2026-02-06 23:01:16] 2026-02-06 22:00:49,356 | INFO     | aborting job monitoring since job object (job id=6996410308) has expired
[2026-02-06 23:01:16] 2026-02-06 22:00:49,792 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 23:01:16] 2026-02-06 22:00:49,803 | INFO     | sufficient remaining disk space (499175653376 B)
[2026-02-06 23:01:16] 2026-02-06 22:00:49,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | INFO     | update_server=False
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 23:01:16] 2026-02-06 22:00:49,804 | INFO     | will abort loop
[2026-02-06 23:01:16] 2026-02-06 22:00:49,950 | INFO     | job.realtimelogging is not enabled
[2026-02-06 23:01:16] 2026-02-06 22:00:50,187 | INFO     | all payload control threads have been joined
[2026-02-06 23:01:16] 2026-02-06 22:00:50,809 | INFO     | [job] retrieve thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:50,810 | INFO     | [job] job monitor thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:50,811 | INFO     | [job] queue monitor thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:50,836 | INFO     | all data control threads have been joined
[2026-02-06 23:01:16] 2026-02-06 22:00:50,911 | INFO     | [data] copytool_in thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:50,956 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:50,996 | INFO     | [payload] validate_post thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:51,193 | INFO     | [payload] control thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:51,403 | INFO     | all job control threads have been joined
[2026-02-06 23:01:16] 2026-02-06 22:00:51,808 | INFO     | [data] copytool_out thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:51,840 | INFO     | [data] control thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:52,024 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:52,105 | INFO     | [payload] failed_post thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:52,112 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:52,172 | INFO     | [job] validate thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:52,240 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:52,409 | INFO     | [job] control thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:00:53,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 23:01:16] 2026-02-06 22:00:57,127 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 23:01:16] 2026-02-06 22:01:11,222 | INFO     | [monitor] cgroup control has ended
[2026-02-06 23:01:16] 2026-02-06 22:01:11,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665797384000)>', '<ExcThread(monitor, started 139665441003264)>']
[2026-02-06 23:01:16] 2026-02-06 22:01:11,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 23:01:16] 2026-02-06 22:01:11,923 | INFO     | [monitor] control thread has ended
[2026-02-06 23:01:16] 2026-02-06 22:01:16,712 | INFO     | all workflow threads have been joined
[2026-02-06 23:01:16] 2026-02-06 22:01:16,713 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 23:01:16] 2026-02-06 22:01:16,713 | INFO     | traces error code: 0
[2026-02-06 23:01:16] 2026-02-06 22:01:16,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 23:01:16] 2026-02-06 22:01:16,754 [wrapper] ==== pilot stdout END ====
[2026-02-06 23:01:16] 2026-02-06 22:01:16,757 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 23:01:16] 2026-02-06 22:01:16,758 [wrapper] pilotpid: 2695992
[2026-02-06 23:01:16] 2026-02-06 22:01:16,760 [wrapper] Pilot exit status: 0
[2026-02-06 23:01:16] 2026-02-06 22:01:16,766 [wrapper] pandaids: 6996410308
[2026-02-06 23:01:16] 2026-02-06 22:01:16,777 [wrapper] cleanup supervisor_pilot 2705424 2695993
[2026-02-06 23:01:16] 2026-02-06 22:01:16,779 [wrapper] Test setup, not cleaning
[2026-02-06 23:01:16] 2026-02-06 22:01:16,781 [wrapper] apfmon messages muted
[2026-02-06 23:01:16] 2026-02-06 22:01:16,782 [wrapper] ==== wrapper stdout END ====
[2026-02-06 23:01:16] 2026-02-06 22:01:16,784 [wrapper] ==== wrapper stderr END ====
[2026-02-06 23:01:16]  *** Error codes and diagnostics ***
[2026-02-06 23:01:16]     "exeErrorCode": 0,
[2026-02-06 23:01:16]     "exeErrorDiag": "",
[2026-02-06 23:01:16]     "pilotErrorCode": 0,
[2026-02-06 23:01:16]     "pilotErrorDiag": "",
[2026-02-06 23:01:16]  *** Listing of results directory ***
[2026-02-06 23:01:17] total 892496
[2026-02-06 23:01:17] -rwx------ 1 boinc boinc     36322 Feb  6 08:41 runpilot2-wrapper.sh
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc    584627 Feb  6 08:42 pilot3.tar.gz
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc      5111 Feb  6 08:43 queuedata.json
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc       100 Feb  6 20:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 23:01:17] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 20:09 run_atlas
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc       105 Feb  6 20:09 job.xml
[2026-02-06 23:01:17] -rw-r--r-- 2 boinc boinc 647270054 Feb  6 20:09 EVNT.48431111._000069.pool.root.1
[2026-02-06 23:01:17] -rw-r--r-- 2 boinc boinc    597954 Feb  6 20:09 input.tar.gz
[2026-02-06 23:01:17] -rw-r--r-- 2 boinc boinc     15845 Feb  6 20:09 start_atlas.sh
[2026-02-06 23:01:17] drwxrwx--x 2 boinc boinc      4096 Feb  6 20:09 shared
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc         0 Feb  6 20:09 boinc_setup_complete
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc      6207 Feb  6 20:09 init_data.xml
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc         0 Feb  6 20:09 boinc_lockfile
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc      2545 Feb  6 20:09 pandaJob.out
[2026-02-06 23:01:17] -rw------- 1 boinc boinc   1009512 Feb  6 20:09 agis_schedconf.cvmfs.json
[2026-02-06 23:01:17] -rw------- 1 boinc boinc   1513088 Feb  6 20:09 agis_ddmendpoints.agis.ALL.json
[2026-02-06 23:01:17] -rw------- 1 boinc boinc       420 Feb  6 20:09 workernode_map.json
[2026-02-06 23:01:17] drwx------ 5 boinc boinc      4096 Feb  6 20:09 pilot3
[2026-02-06 23:01:17] -rw------- 1 boinc boinc 259188587 Feb  6 23:00 HITS.48431113._003411.pool.root.1
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc       531 Feb  6 23:00 boinc_task_state.xml
[2026-02-06 23:01:17] -rw------- 1 boinc boinc        95 Feb  6 23:00 pilot_heartbeat.json
[2026-02-06 23:01:17] -rw------- 1 boinc boinc      1016 Feb  6 23:00 memory_monitor_summary.json
[2026-02-06 23:01:17] -rw------- 1 boinc boinc    308668 Feb  6 23:00 log.48431113._003411.job.log.tgz.1
[2026-02-06 23:01:17] -rw------- 1 boinc boinc      6298 Feb  6 23:00 heartbeat.json
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc      8192 Feb  6 23:01 boinc_mmap_file
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc        28 Feb  6 23:01 wrapper_checkpoint.txt
[2026-02-06 23:01:17] -rw------- 1 boinc boinc      5148 Feb  6 23:01 pilotlog.txt
[2026-02-06 23:01:17] -rw------- 1 boinc boinc   1457569 Feb  6 23:01 log.48431113._003411.job.log.1
[2026-02-06 23:01:17] -rw------- 1 boinc boinc       357 Feb  6 23:01 output.list
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc       620 Feb  6 23:01 runtime_log
[2026-02-06 23:01:17] -rw------- 1 boinc boinc   1781760 Feb  6 23:01 result.tar.gz
[2026-02-06 23:01:17] -rw------- 1 boinc boinc       660 Feb  6 23:01 DtJODmCeV88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwTYKDmiPNv7n.diag
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc      8902 Feb  6 23:01 runtime_log.err
[2026-02-06 23:01:17] -rw-r--r-- 1 boinc boinc     11776 Feb  6 23:01 stderr.txt
[2026-02-06 23:01:17] HITS file was successfully produced:
[2026-02-06 23:01:17] -rw------- 1 boinc boinc 259188587 Feb  6 23:00 shared/HITS.pool.root.1
[2026-02-06 23:01:17]  *** Contents of shared directory: ***
[2026-02-06 23:01:17] total 887564
[2026-02-06 23:01:17] -rw-r--r-- 2 boinc boinc 647270054 Feb  6 20:09 ATLAS.root_0
[2026-02-06 23:01:17] -rw-r--r-- 2 boinc boinc    597954 Feb  6 20:09 input.tar.gz
[2026-02-06 23:01:17] -rw-r--r-- 2 boinc boinc     15845 Feb  6 20:09 start_atlas.sh
[2026-02-06 23:01:17] -rw------- 1 boinc boinc 259188587 Feb  6 23:00 HITS.pool.root.1
[2026-02-06 23:01:17] -rw------- 1 boinc boinc   1781760 Feb  6 23:01 result.tar.gz
23:01:18 (2691969): run_atlas exited; CPU time 20066.098966
23:01:18 (2691969): called boinc_finish(0)

</stderr_txt>
]]>

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