Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:17:27 (13021): wrapper (7.7.26015): starting
08:17:27 (13021): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 08:17:27] Arguments: --nthreads 8
[2026-02-06 08:17:27] Threads: 8
[2026-02-06 08:17:27] Checking for CVMFS
[2026-02-06 08:17:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 08:17:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 08:17:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 08:17:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 08:17:30] 2.11.2.0 27806 75407 135848 155933 3 51 18410562 25165825 1063 130560 0 27685095 99.824 18419896 3595 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-06 08:17:30] CVMFS is ok
[2026-02-06 08:17:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 08:17:30] Checking for apptainer binary...
[2026-02-06 08:17:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 08:17:30] Running /usr/bin/apptainer --version
[2026-02-06 08:17:30] apptainer version 1.3.2-1.el7
[2026-02-06 08:17:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 08:17:49] cg-vwn467.simple-grid.lan
[2026-02-06 08:17:49] apptainer works
[2026-02-06 08:17:49] Set ATHENA_PROC_NUMBER=8
[2026-02-06 08:17:49] Set ATHENA_CORE_NUMBER=8
[2026-02-06 08:17:49] Starting ATLAS job with PandaID=6995839082
[2026-02-06 08:17:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 15:02:59]  *** The last 200 lines of the pilot log: ***
[2026-02-06 15:02:59] 2026-02-06 14:01:57,278 | INFO     | job 6995839082 has finished - writing final server update
[2026-02-06 15:02:59] 2026-02-06 14:01:57,279 | INFO     | total number of processed events: 400 (read)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,280 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6995839082/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,281 | INFO     | extracted standard info from prmon json
[2026-02-06 15:02:59] 2026-02-06 14:01:57,281 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 15:02:59] 2026-02-06 14:01:57,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 15:02:59] 2026-02-06 14:01:57,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 15:02:59] 2026-02-06 14:01:57,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 15:02:59] 2026-02-06 14:01:57,289 | INFO     | fitting pss+swap vs Time
[2026-02-06 15:02:59] 2026-02-06 14:01:57,290 | INFO     | sum of square deviations: 17972496978.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,294 | INFO     | sum of deviations: 153918770818.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,295 | INFO     | mean x: 1770374725.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,295 | INFO     | mean y: 2477229.888888889
[2026-02-06 15:02:59] 2026-02-06 14:01:57,295 | INFO     | intersect: -15159239135.556187
[2026-02-06 15:02:59] 2026-02-06 14:01:57,296 | INFO     | chi2: 7.858141992679283
[2026-02-06 15:02:59] 2026-02-06 14:01:57,296 | INFO     | sum of square deviations: 17284846875.5
[2026-02-06 15:02:59] 2026-02-06 14:01:57,300 | INFO     | sum of deviations: 177213590203.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,301 | INFO     | mean x: 1770374572.5
[2026-02-06 15:02:59] 2026-02-06 14:01:57,301 | INFO     | mean y: 2482335.5811518324
[2026-02-06 15:02:59] 2026-02-06 14:01:57,301 | INFO     | intersect: -18148354420.83362
[2026-02-06 15:02:59] 2026-02-06 14:01:57,301 | INFO     | chi2: 7.130025686903685
[2026-02-06 15:02:59] 2026-02-06 14:01:57,302 | INFO     | current chi2=7.130025686903685 (change=9.265756542117941 %)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,302 | INFO     | right removable region: 381
[2026-02-06 15:02:59] 2026-02-06 14:01:57,302 | INFO     | sum of square deviations: 17284846875.5
[2026-02-06 15:02:59] 2026-02-06 14:01:57,307 | INFO     | sum of deviations: 17620611828.999996
[2026-02-06 15:02:59] 2026-02-06 14:01:57,307 | INFO     | mean x: 1770374877.5
[2026-02-06 15:02:59] 2026-02-06 14:01:57,308 | INFO     | mean y: 2507441.9162303666
[2026-02-06 15:02:59] 2026-02-06 14:01:57,308 | INFO     | intersect: -1802257664.3606243
[2026-02-06 15:02:59] 2026-02-06 14:01:57,308 | INFO     | chi2: 3.106266987981257
[2026-02-06 15:02:59] 2026-02-06 14:01:57,308 | INFO     | current chi2=3.106266987981257 (change=60.47071953045536 %)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,309 | INFO     | sum of square deviations: 16614964548.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,313 | INFO     | sum of deviations: -68992428315.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,314 | INFO     | mean x: 1770375030.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,314 | INFO     | mean y: 2527113.0106100794
[2026-02-06 15:02:59] 2026-02-06 14:01:57,314 | INFO     | intersect: 7353880285.933491
[2026-02-06 15:02:59] 2026-02-06 14:01:57,315 | INFO     | chi2: 1.0655914561168616
[2026-02-06 15:02:59] 2026-02-06 14:01:57,315 | INFO     | current chi2=1.0655914561168616 (change=65.69543248407689 %)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,315 | INFO     | sum of square deviations: 15962617433.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,320 | INFO     | sum of deviations: -79403176711.49997
[2026-02-06 15:02:59] 2026-02-06 14:01:57,320 | INFO     | mean x: 1770375182.5
[2026-02-06 15:02:59] 2026-02-06 14:01:57,320 | INFO     | mean y: 2529538.0026881723
[2026-02-06 15:02:59] 2026-02-06 14:01:57,320 | INFO     | intersect: 8808943276.334213
[2026-02-06 15:02:59] 2026-02-06 14:01:57,321 | INFO     | chi2: 1.0186532677116178
[2026-02-06 15:02:59] 2026-02-06 14:01:57,321 | INFO     | current chi2=1.0186532677116178 (change=4.404895341061757 %)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,321 | INFO     | left removable region: 30
[2026-02-06 15:02:59] 2026-02-06 14:01:57,321 | INFO     | sum of square deviations: 13408995600.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,325 | INFO     | sum of deviations: -18537551141.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,325 | INFO     | mean x: 1770375457.0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,326 | INFO     | mean y: 2526481.344729345
[2026-02-06 15:02:59] 2026-02-06 14:01:57,326 | INFO     | intersect: 2450019683.0658746
[2026-02-06 15:02:59] 2026-02-06 14:01:57,326 | INFO     | chi2: 0.15189425748654864
[2026-02-06 15:02:59] 2026-02-06 14:01:57,327 | INFO     | current memory leak: -1.38 B/s (using 351 data points, chi2=0.15)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | could have reported an average CPU frequency of 2250 MHz (17 samples)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | ..............................
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | . Timing measurements:
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | . get job = 0 s
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | . initial setup = 114 s
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | . payload setup = 156 s
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | . stage-in = 0 s
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | . payload execution = 23687 s
[2026-02-06 15:02:59] 2026-02-06 14:01:57,328 | INFO     | . stage-out = 1 s
[2026-02-06 15:02:59] 2026-02-06 14:01:57,329 | INFO     | . log creation = 0 s
[2026-02-06 15:02:59] 2026-02-06 14:01:57,329 | INFO     | ..............................
[2026-02-06 15:02:59] 2026-02-06 14:01:57,436 | INFO     | 
[2026-02-06 15:02:59] 2026-02-06 14:01:57,436 | INFO     | job summary report
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | --------------------------------------------------
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | PanDA job id: 6995839082
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | task id: 48329686
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | errors: (none)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | pilot state: finished 
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | transexitcode: 0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | exeerrorcode: 0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,437 | INFO     | exeerrordiag: 
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | exitcode: 0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | exitmsg: OK
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | cpuconsumptiontime: 99444 s
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | nevents: 400
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | neventsw: 0
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | pid: 21464
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | pgrp: 21464
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | corecount: 8
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | event service: False
[2026-02-06 15:02:59] 2026-02-06 14:01:57,438 | INFO     | sizes: {0: 2282610, 1: 2283127, 12: 2283127, 23847: 2318166, 23849: 2327164, 23850: 2327220, 23853: 2327606}
[2026-02-06 15:02:59] 2026-02-06 14:01:57,439 | INFO     | --------------------------------------------------
[2026-02-06 15:02:59] 2026-02-06 14:01:57,439 | INFO     | 
[2026-02-06 15:02:59] 2026-02-06 14:01:57,439 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-02-06 15:02:59] 2026-02-06 14:01:57,461 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,461 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,461 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,461 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,461 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,461 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,461 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,461 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,462 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,463 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 15:02:59] 2026-02-06 14:01:57,463 | INFO     | job 6995839082 has completed (purged errors)
[2026-02-06 15:02:59] 2026-02-06 14:01:57,463 | INFO     | overall cleanup function is called
[2026-02-06 15:02:59] 2026-02-06 14:01:58,468 | INFO     | --- collectZombieJob: --- 10, [21464]
[2026-02-06 15:02:59] 2026-02-06 14:01:58,468 | INFO     | zombie collector waiting for pid 21464
[2026-02-06 15:02:59] 2026-02-06 14:01:58,469 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 15:02:59] 2026-02-06 14:01:58,469 | INFO     | collected zombie processes
[2026-02-06 15:02:59] 2026-02-06 14:01:58,469 | INFO     | will attempt to kill all subprocesses of pid=21464
[2026-02-06 15:02:59] 2026-02-06 14:01:58,537 | INFO     | process IDs to be killed: [21464] (in reverse order)
[2026-02-06 15:02:59] 2026-02-06 14:01:58,592 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 15:02:59] 2026-02-06 14:01:58,593 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 15:02:59] 2026-02-06 14:01:58,595 | INFO     | did not find any defunct processes belonging to 21464
[2026-02-06 15:02:59] 2026-02-06 14:01:58,596 | INFO     | did not find any defunct processes belonging to 21464
[2026-02-06 15:02:59] 2026-02-06 14:01:58,597 | INFO     | ready for new job
[2026-02-06 15:02:59] 2026-02-06 14:01:58,597 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 15:02:59] 2026-02-06 14:01:58,599 | INFO     | **************************************
[2026-02-06 15:02:59] 2026-02-06 14:01:58,599 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 15:02:59] 2026-02-06 14:01:58,600 | INFO     | **************************************
[2026-02-06 15:02:59] 2026-02-06 14:01:58,600 | INFO     | 
[2026-02-06 15:02:59] 2026-02-06 14:01:58,600 | INFO     | pilot is running in a VM
[2026-02-06 15:02:59] 2026-02-06 14:01:58,600 | INFO     | architecture information:
[2026-02-06 15:02:59] 2026-02-06 14:01:58,601 | INFO     | executing command: cat /etc/os-release
[2026-02-06 15:02:59] 2026-02-06 14:01:58,618 | INFO     | cat /etc/os-release:
[2026-02-06 15:02:59] NAME="CentOS Linux"
[2026-02-06 15:02:59] VERSION="7 (Core)"
[2026-02-06 15:02:59] ID="centos"
[2026-02-06 15:02:59] ID_LIKE="rhel fedora"
[2026-02-06 15:02:59] VERSION_ID="7"
[2026-02-06 15:02:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 15:02:59] ANSI_COLOR="0;31"
[2026-02-06 15:02:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 15:02:59] HOME_URL="https://www.centos.org/"
[2026-02-06 15:02:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 15:02:59] 
[2026-02-06 15:02:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 15:02:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 15:02:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 15:02:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 15:02:59] 
[2026-02-06 15:02:59] 2026-02-06 14:01:58,618 | INFO     | **************************************
[2026-02-06 15:02:59] 2026-02-06 14:01:59,121 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-02-06 15:02:59] 2026-02-06 14:01:59,140 | INFO     | sufficient remaining disk space (497080598528 B)
[2026-02-06 15:02:59] 2026-02-06 14:01:59,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 15:02:59] 2026-02-06 14:01:59,140 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 15:02:59] 2026-02-06 14:01:59,140 | INFO     | update_server=False
[2026-02-06 15:02:59] 2026-02-06 14:01:59,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 15:02:59] 2026-02-06 14:01:59,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 15:02:59] 2026-02-06 14:01:59,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 15:02:59] 2026-02-06 14:01:59,141 | INFO     | aborting loop
[2026-02-06 15:02:59] 2026-02-06 14:01:59,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 15:02:59] 2026-02-06 14:01:59,819 | INFO     | all job control threads have been joined
[2026-02-06 15:02:59] 2026-02-06 14:02:00,027 | INFO     | all data control threads have been joined
[2026-02-06 15:02:59] 2026-02-06 14:02:00,146 | INFO     | [job] retrieve thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,147 | INFO     | [job] queue monitor thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,147 | INFO     | [job] job monitor thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,303 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 15:02:59] 2026-02-06 14:02:00,406 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,449 | INFO     | [job] validate thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,477 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,620 | INFO     | all payload control threads have been joined
[2026-02-06 15:02:59] 2026-02-06 14:02:00,727 | INFO     | [payload] failed_post thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,750 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,825 | INFO     | [job] control thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:00,911 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:01,033 | INFO     | [data] control thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:01,036 | INFO     | [payload] validate_post thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:01,364 | INFO     | [data] copytool_out thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:01,626 | INFO     | [payload] control thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:01,629 | INFO     | [data] copytool_in thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:04,309 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 15:02:59] 2026-02-06 14:02:28,177 | INFO     | 23981s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-06 15:02:59] 2026-02-06 14:02:29,264 | INFO     | PID=17000 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-06 15:02:59] 2026-02-06 14:02:29,264 | INFO     | .. there are 2 such processes running
[2026-02-06 15:02:59] 2026-02-06 14:02:29,264 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 15:02:59] 2026-02-06 14:02:29,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 15:02:59] 2026-02-06 14:02:29,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 15:02:59] 2026-02-06 14:02:52,742 | INFO     | [monitor] cgroup control has ended
[2026-02-06 15:02:59] 2026-02-06 14:02:53,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485246314304)>', '<ExcThread(monitor, started 140484647298816)>']
[2026-02-06 15:02:59] 2026-02-06 14:02:54,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 15:02:59] 2026-02-06 14:02:54,394 | INFO     | [monitor] control thread has ended
[2026-02-06 15:02:59] 2026-02-06 14:02:58,653 | INFO     | all workflow threads have been joined
[2026-02-06 15:02:59] 2026-02-06 14:02:58,654 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 15:02:59] 2026-02-06 14:02:58,654 | INFO     | traces error code: 0
[2026-02-06 15:02:59] 2026-02-06 14:02:58,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 15:02:59] 2026-02-06 14:02:58,802 [wrapper] ==== pilot stdout END ====
[2026-02-06 15:02:59] 2026-02-06 14:02:58,807 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 15:02:59] 2026-02-06 14:02:58,812 [wrapper] pilotpid: 17000
[2026-02-06 15:02:59] 2026-02-06 14:02:58,817 [wrapper] Pilot exit status: 0
[2026-02-06 15:02:59] 2026-02-06 14:02:58,836 [wrapper] pandaids: 6995839082
[2026-02-06 15:02:59] 2026-02-06 14:02:58,882 [wrapper] cleanup supervisor_pilot 30191 17001
[2026-02-06 15:02:59] 2026-02-06 14:02:58,889 [wrapper] Test setup, not cleaning
[2026-02-06 15:02:59] 2026-02-06 14:02:58,897 [wrapper] apfmon messages muted
[2026-02-06 15:02:59] 2026-02-06 14:02:58,903 [wrapper] ==== wrapper stdout END ====
[2026-02-06 15:02:59] 2026-02-06 14:02:58,906 [wrapper] ==== wrapper stderr END ====
[2026-02-06 15:02:59]  *** Error codes and diagnostics ***
[2026-02-06 15:02:59]     "exeErrorCode": 0,
[2026-02-06 15:02:59]     "exeErrorDiag": "",
[2026-02-06 15:02:59]     "pilotErrorCode": 0,
[2026-02-06 15:02:59]     "pilotErrorDiag": "",
[2026-02-06 15:02:59]  *** Listing of results directory ***
[2026-02-06 15:02:59] total 471484
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc    584627 Feb  6 05:30 pilot3.tar.gz
[2026-02-06 15:02:59] -rwx------. 1 boinc boinc     36322 Feb  6 05:52 runpilot2-wrapper.sh
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc      5111 Feb  6 05:53 queuedata.json
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc       100 Feb  6 08:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 15:02:59] -rwxr-xr-x. 1 boinc boinc      7986 Feb  6 08:17 run_atlas
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc       105 Feb  6 08:17 job.xml
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc      6390 Feb  6 08:17 init_data.xml
[2026-02-06 15:02:59] -rw-r--r--. 2 boinc boinc 274555906 Feb  6 08:17 EVNT.48329684._000001.pool.root.1
[2026-02-06 15:02:59] -rw-r--r--. 2 boinc boinc     15845 Feb  6 08:17 start_atlas.sh
[2026-02-06 15:02:59] drwxrwx--x. 2 boinc boinc        68 Feb  6 08:17 shared
[2026-02-06 15:02:59] -rw-r--r--. 2 boinc boinc    597983 Feb  6 08:17 input.tar.gz
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc         0 Feb  6 08:17 boinc_lockfile
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc      2605 Feb  6 08:17 pandaJob.out
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc       413 Feb  6 08:24 workernode_map.json
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc   1007453 Feb  6 08:24 agis_schedconf.cvmfs.json
[2026-02-06 15:02:59] drwx------. 5 boinc boinc      4096 Feb  6 08:24 pilot3
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc 196428506 Feb  6 15:01 HITS.48329686._000127.pool.root.1
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc       531 Feb  6 15:01 boinc_task_state.xml
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc      1018 Feb  6 15:01 memory_monitor_summary.json
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc        95 Feb  6 15:01 pilot_heartbeat.json
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc   1513144 Feb  6 15:01 agis_ddmendpoints.agis.ALL.json
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc    611371 Feb  6 15:01 log.48329686._000127.job.log.tgz.1
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc      6304 Feb  6 15:01 heartbeat.json
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc      8192 Feb  6 15:02 boinc_mmap_file
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc        28 Feb  6 15:02 wrapper_checkpoint.txt
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc      4996 Feb  6 15:02 pilotlog.txt
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc   3331726 Feb  6 15:02 log.48329686._000127.job.log.1
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc       357 Feb  6 15:02 output.list
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc       620 Feb  6 15:02 runtime_log
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc   3962880 Feb  6 15:02 result.tar.gz
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc      8816 Feb  6 15:02 runtime_log.err
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc       656 Feb  6 15:02 QmuLDmv0S88n9Rq4apOajLDm4fhM0noT9bVooX4SDmyGXKDmB7FKVn.diag
[2026-02-06 15:02:59] -rw-r--r--. 1 boinc boinc     20735 Feb  6 15:02 stderr.txt
[2026-02-06 15:02:59] HITS file was successfully produced:
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc 196428506 Feb  6 15:01 shared/HITS.pool.root.1
[2026-02-06 15:02:59]  *** Contents of shared directory: ***
[2026-02-06 15:02:59] total 464424
[2026-02-06 15:02:59] -rw-r--r--. 2 boinc boinc 274555906 Feb  6 08:17 ATLAS.root_0
[2026-02-06 15:02:59] -rw-r--r--. 2 boinc boinc     15845 Feb  6 08:17 start_atlas.sh
[2026-02-06 15:02:59] -rw-r--r--. 2 boinc boinc    597983 Feb  6 08:17 input.tar.gz
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc 196428506 Feb  6 15:01 HITS.pool.root.1
[2026-02-06 15:02:59] -rw-------. 1 boinc boinc   3962880 Feb  6 15:02 result.tar.gz
15:03:00 (13021): run_atlas exited; CPU time 99697.088512
15:03:00 (13021): called boinc_finish(0)

</stderr_txt>
]]>

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