Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:35:31 (2962245): wrapper (7.7.26015): starting
09:35:31 (2962245): wrapper: running run_atlas (--nthreads 3)
[2026-02-06 09:35:31] Arguments: --nthreads 3
[2026-02-06 09:35:31] Threads: 3
[2026-02-06 09:35:31] Checking for CVMFS
[2026-02-06 09:35:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 09:35:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 09:35:33] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 09:35:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 09:35:33] 2.9.2.0 2962440 0 30036 155934 3 1 26600005 36864001 0 130560 0 0 0.000 1336 18816 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 09:35:33] CVMFS is ok
[2026-02-06 09:35:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 09:35:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 09:35:33] Further information can be found at the LHC@home message board.
[2026-02-06 09:35:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 09:35:33] Checking for apptainer binary...
[2026-02-06 09:35:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 09:35:33] Running /usr/bin/apptainer --version
[2026-02-06 09:35:33] apptainer version 1.4.1-1.1
[2026-02-06 09:35:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 09:35:33] magicA161a
[2026-02-06 09:35:33] apptainer works
[2026-02-06 09:35:33] Set ATHENA_PROC_NUMBER=3
[2026-02-06 09:35:33] Set ATHENA_CORE_NUMBER=3
[2026-02-06 09:35:33] Starting ATLAS job with PandaID=6996408425
[2026-02-06 09:35:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 11:21:58]  *** The last 200 lines of the pilot log: ***
[2026-02-06 11:21:58] 2026-02-06 10:21:26,607 | INFO     | overall cleanup function is called
[2026-02-06 11:21:58] 2026-02-06 10:21:27,614 | INFO     | --- collectZombieJob: --- 10, [2970944]
[2026-02-06 11:21:58] 2026-02-06 10:21:27,614 | INFO     | zombie collector waiting for pid 2970944
[2026-02-06 11:21:58] 2026-02-06 10:21:27,614 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 11:21:58] 2026-02-06 10:21:27,614 | INFO     | collected zombie processes
[2026-02-06 11:21:58] 2026-02-06 10:21:27,614 | INFO     | will attempt to kill all subprocesses of pid=2970944
[2026-02-06 11:21:58] 2026-02-06 10:21:27,655 | INFO     | process IDs to be killed: [2970944] (in reverse order)
[2026-02-06 11:21:58] 2026-02-06 10:21:27,679 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 11:21:58] 2026-02-06 10:21:27,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 11:21:58] 2026-02-06 10:21:27,680 | INFO     | did not find any defunct processes belonging to 2970944
[2026-02-06 11:21:58] 2026-02-06 10:21:27,681 | INFO     | did not find any defunct processes belonging to 2970944
[2026-02-06 11:21:58] 2026-02-06 10:21:27,681 | INFO     | ready for new job
[2026-02-06 11:21:58] 2026-02-06 10:21:27,681 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 11:21:58] 2026-02-06 10:21:27,682 | INFO     | **************************************
[2026-02-06 11:21:58] 2026-02-06 10:21:27,682 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 11:21:58] 2026-02-06 10:21:27,682 | INFO     | **************************************
[2026-02-06 11:21:58] 2026-02-06 10:21:27,682 | INFO     | 
[2026-02-06 11:21:58] 2026-02-06 10:21:27,682 | INFO     | architecture information:
[2026-02-06 11:21:58] 2026-02-06 10:21:27,682 | INFO     | executing command: cat /etc/os-release
[2026-02-06 11:21:58] 2026-02-06 10:21:27,691 | INFO     | cat /etc/os-release:
[2026-02-06 11:21:58] NAME="CentOS Linux"
[2026-02-06 11:21:58] VERSION="7 (Core)"
[2026-02-06 11:21:58] ID="centos"
[2026-02-06 11:21:58] ID_LIKE="rhel fedora"
[2026-02-06 11:21:58] VERSION_ID="7"
[2026-02-06 11:21:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 11:21:58] ANSI_COLOR="0;31"
[2026-02-06 11:21:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 11:21:58] HOME_URL="https://www.centos.org/"
[2026-02-06 11:21:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 11:21:58] 
[2026-02-06 11:21:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 11:21:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 11:21:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 11:21:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 11:21:58] 
[2026-02-06 11:21:58] 2026-02-06 10:21:27,691 | INFO     | **************************************
[2026-02-06 11:21:58] 2026-02-06 10:21:28,194 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 11:21:58] 2026-02-06 10:21:28,207 | INFO     | sufficient remaining disk space (378433175552 B)
[2026-02-06 11:21:58] 2026-02-06 10:21:28,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 11:21:58] 2026-02-06 10:21:28,207 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 11:21:58] 2026-02-06 10:21:28,207 | INFO     | update_server=False
[2026-02-06 11:21:58] 2026-02-06 10:21:28,207 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 11:21:58] 2026-02-06 10:21:28,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 11:21:58] 2026-02-06 10:21:28,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 11:21:58] 2026-02-06 10:21:28,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 11:21:58] 2026-02-06 10:21:28,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 11:21:58] 2026-02-06 10:21:28,249 | INFO     | aborting loop
[2026-02-06 11:21:58] 2026-02-06 10:21:28,961 | INFO     | all job control threads have been joined
[2026-02-06 11:21:58] 2026-02-06 10:21:29,059 | INFO     | all data control threads have been joined
[2026-02-06 11:21:58] 2026-02-06 10:21:29,213 | INFO     | [job] retrieve thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:29,213 | INFO     | [job] queue monitor thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:29,254 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:29,255 | INFO     | [job] job monitor thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:29,312 | INFO     | [data] copytool_in thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:29,594 | INFO     | [payload] failed_post thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:29,685 | INFO     | all payload control threads have been joined
[2026-02-06 11:21:58] 2026-02-06 10:21:29,967 | INFO     | [job] control thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:30,065 | INFO     | [data] control thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:30,217 | INFO     | [data] copytool_out thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:30,365 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:30,558 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:30,598 | INFO     | [job] validate thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:30,678 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:30,690 | INFO     | [payload] control thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:30,695 | INFO     | [payload] validate_post thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:32,214 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 11:21:58] 2026-02-06 10:21:51,180 | INFO     | [monitor] cgroup control has ended
[2026-02-06 11:21:58] 2026-02-06 10:21:52,784 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872200886080)>', '<ExcThread(monitor, started 139871406499584)>']
[2026-02-06 11:21:58] 2026-02-06 10:21:57,809 | INFO     | all workflow threads have been joined
[2026-02-06 11:21:58] 2026-02-06 10:21:57,810 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 11:21:58] 2026-02-06 10:21:57,811 | INFO     | traces error code: 0
[2026-02-06 11:21:58] 2026-02-06 10:21:57,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 11:21:58] 2026-02-06 10:21:57,998 | INFO     | PID=2966514 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 11:21:58] 2026-02-06 10:21:57,998 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 11:21:58] 2026-02-06 10:21:57,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 11:21:58] 2026-02-06 10:21:57,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 11:21:58] 2026-02-06 10:21:57,998 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 11:21:58] 2026-02-06 10:21:57,998 | INFO     | [monitor] control thread has ended
[2026-02-06 11:21:58] 2026-02-06 10:21:58,044 [wrapper] ==== pilot stdout END ====
[2026-02-06 11:21:58] 2026-02-06 10:21:58,047 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 11:21:58] 2026-02-06 10:21:58,049 [wrapper] pilotpid: 2966514
[2026-02-06 11:21:58] 2026-02-06 10:21:58,051 [wrapper] Pilot exit status: 0
[2026-02-06 11:21:58] 2026-02-06 10:21:58,058 [wrapper] pandaids: 6996408425
[2026-02-06 11:21:58] 2026-02-06 10:21:58,074 [wrapper] cleanup supervisor_pilot 2976210 2966515
[2026-02-06 11:21:58] 2026-02-06 10:21:58,076 [wrapper] Test setup, not cleaning
[2026-02-06 11:21:58] 2026-02-06 10:21:58,078 [wrapper] apfmon messages muted
[2026-02-06 11:21:58] 2026-02-06 10:21:58,081 [wrapper] ==== wrapper stdout END ====
[2026-02-06 11:21:58] 2026-02-06 10:21:58,083 [wrapper] ==== wrapper stderr END ====
[2026-02-06 11:21:58]  *** Error codes and diagnostics ***
[2026-02-06 11:21:58]     "exeErrorCode": 0,
[2026-02-06 11:21:58]     "exeErrorDiag": "",
[2026-02-06 11:21:58]     "pilotErrorCode": 0,
[2026-02-06 11:21:58]     "pilotErrorDiag": "",
[2026-02-06 11:21:58]  *** Listing of results directory ***
[2026-02-06 11:21:58] total 884800
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc    584627 Feb  6 06:55 pilot3.tar.gz
[2026-02-06 11:21:58] -rwx------ 1 boinc boinc     36322 Feb  6 06:55 runpilot2-wrapper.sh
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc      5111 Feb  6 06:56 queuedata.json
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc       100 Feb  6 09:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 11:21:58] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 09:35 run_atlas
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc       105 Feb  6 09:35 job.xml
[2026-02-06 11:21:58] -rw-r--r-- 2 boinc boinc 648350501 Feb  6 09:35 EVNT.48431111._000046.pool.root.1
[2026-02-06 11:21:58] -rw-r--r-- 2 boinc boinc    597956 Feb  6 09:35 input.tar.gz
[2026-02-06 11:21:58] -rw-r--r-- 2 boinc boinc     15845 Feb  6 09:35 start_atlas.sh
[2026-02-06 11:21:58] drwxrwx--x 2 boinc boinc      4096 Feb  6 09:35 shared
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc         0 Feb  6 09:35 boinc_setup_complete
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc      6448 Feb  6 09:35 init_data.xml
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc         0 Feb  6 09:35 boinc_lockfile
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc      2544 Feb  6 09:35 pandaJob.out
[2026-02-06 11:21:58] -rw------- 1 boinc boinc   1007453 Feb  6 09:35 agis_schedconf.cvmfs.json
[2026-02-06 11:21:58] -rw------- 1 boinc boinc   1513144 Feb  6 09:35 agis_ddmendpoints.agis.ALL.json
[2026-02-06 11:21:58] -rw------- 1 boinc boinc       427 Feb  6 09:35 workernode_map.json
[2026-02-06 11:21:58] drwx------ 5 boinc boinc      4096 Feb  6 09:35 pilot3
[2026-02-06 11:21:58] -rw------- 1 boinc boinc 251319536 Feb  6 11:21 HITS.48431113._002291.pool.root.1
[2026-02-06 11:21:58] -rw------- 1 boinc boinc        95 Feb  6 11:21 pilot_heartbeat.json
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc       530 Feb  6 11:21 boinc_task_state.xml
[2026-02-06 11:21:58] -rw------- 1 boinc boinc      1011 Feb  6 11:21 memory_monitor_summary.json
[2026-02-06 11:21:58] -rw------- 1 boinc boinc    305760 Feb  6 11:21 log.48431113._002291.job.log.tgz.1
[2026-02-06 11:21:58] -rw------- 1 boinc boinc      6305 Feb  6 11:21 heartbeat.json
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc      8192 Feb  6 11:21 boinc_mmap_file
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc        27 Feb  6 11:21 wrapper_checkpoint.txt
[2026-02-06 11:21:58] -rw------- 1 boinc boinc       747 Feb  6 11:21 pilotlog.txt
[2026-02-06 11:21:58] -rw------- 1 boinc boinc    917428 Feb  6 11:21 log.48431113._002291.job.log.1
[2026-02-06 11:21:58] -rw------- 1 boinc boinc       357 Feb  6 11:21 output.list
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc       620 Feb  6 11:21 runtime_log
[2026-02-06 11:21:58] -rw------- 1 boinc boinc   1239040 Feb  6 11:21 result.tar.gz
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc      8916 Feb  6 11:21 runtime_log.err
[2026-02-06 11:21:58] -rw------- 1 boinc boinc       661 Feb  6 11:21 X5DNDmyzT88n9Rq4apOajLDm4fhM0noT9bVooX4SDmqjXKDmgph4Ln.diag
[2026-02-06 11:21:58] -rw-r--r-- 1 boinc boinc     10696 Feb  6 11:21 stderr.txt
[2026-02-06 11:21:58] HITS file was successfully produced:
[2026-02-06 11:21:58] -rw------- 1 boinc boinc 251319536 Feb  6 11:21 shared/HITS.pool.root.1
[2026-02-06 11:21:58]  *** Contents of shared directory: ***
[2026-02-06 11:21:58] total 880408
[2026-02-06 11:21:58] -rw-r--r-- 2 boinc boinc 648350501 Feb  6 09:35 ATLAS.root_0
[2026-02-06 11:21:58] -rw-r--r-- 2 boinc boinc    597956 Feb  6 09:35 input.tar.gz
[2026-02-06 11:21:58] -rw-r--r-- 2 boinc boinc     15845 Feb  6 09:35 start_atlas.sh
[2026-02-06 11:21:58] -rw------- 1 boinc boinc 251319536 Feb  6 11:21 HITS.pool.root.1
[2026-02-06 11:21:58] -rw------- 1 boinc boinc   1239040 Feb  6 11:21 result.tar.gz
11:21:59 (2962245): run_atlas exited; CPU time 18340.888563
11:21:59 (2962245): called boinc_finish(0)

</stderr_txt>
]]>

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