Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:37:59 (1659): wrapper (7.7.26015): starting
21:37:59 (1659): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 21:37:59] Arguments: --nthreads 8
[2026-02-06 21:37:59] Threads: 8
[2026-02-06 21:37:59] Checking for CVMFS
[2026-02-06 21:38:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 21:38:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 21:38:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 21:38:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 21:38:05] 2.11.2.0 23466 76207 131748 155959 2 53 22441320 25165824 2512 130560 0 25455679 99.793 20836633 2318 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-06 21:38:05] CVMFS is ok
[2026-02-06 21:38:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 21:38:05] Checking for apptainer binary...
[2026-02-06 21:38:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 21:38:05] Running /usr/bin/apptainer --version
[2026-02-06 21:38:06] apptainer version 1.3.2-1.el7
[2026-02-06 21:38:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 21:38:20] cg-vwn389.simple-grid.lan
[2026-02-06 21:38:20] apptainer works
[2026-02-06 21:38:20] Set ATHENA_PROC_NUMBER=8
[2026-02-06 21:38:20] Set ATHENA_CORE_NUMBER=8
[2026-02-06 21:38:20] Starting ATLAS job with PandaID=7000923163
[2026-02-06 21:38:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 03:57:21]  *** The last 200 lines of the pilot log: ***
[2026-02-07 03:57:21] 2026-02-07 02:56:11,802 | INFO     | reading metadata from: /var/lib/boinc/slots/17/PanDA_Pilot-7000923163/jobReport.json
[2026-02-07 03:57:21] 2026-02-07 02:56:11,804 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/17/workernode_map.json
[2026-02-07 03:57:21] 2026-02-07 02:56:11,805 | INFO     | this job has now completed (state=finished)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,805 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,805 | INFO     | log transfer has been attempted: DONE
[2026-02-07 03:57:21] 2026-02-07 02:56:11,805 | INFO     | job 7000923163 has finished - writing final server update
[2026-02-07 03:57:21] 2026-02-07 02:56:11,805 | INFO     | total number of processed events: 400 (read)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,807 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-7000923163/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,808 | INFO     | extracted standard info from prmon json
[2026-02-07 03:57:21] 2026-02-07 02:56:11,808 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 03:57:21] 2026-02-07 02:56:11,808 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 03:57:21] 2026-02-07 02:56:11,809 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 03:57:21] 2026-02-07 02:56:11,809 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 03:57:21] 2026-02-07 02:56:11,815 | INFO     | fitting pss+swap vs Time
[2026-02-07 03:57:21] 2026-02-07 02:56:11,816 | INFO     | sum of square deviations: 14831839022.0
[2026-02-07 03:57:21] 2026-02-07 02:56:11,820 | INFO     | sum of deviations: 88736016434.00002
[2026-02-07 03:57:21] 2026-02-07 02:56:11,821 | INFO     | mean x: 1770421888.0
[2026-02-07 03:57:21] 2026-02-07 02:56:11,821 | INFO     | mean y: 2544605.7988980715
[2026-02-07 03:57:21] 2026-02-07 02:56:11,825 | INFO     | intersect: -10589546200.719116
[2026-02-07 03:57:21] 2026-02-07 02:56:11,826 | INFO     | chi2: 4.4465031649094655
[2026-02-07 03:57:21] 2026-02-07 02:56:11,826 | INFO     | sum of square deviations: 14227353269.5
[2026-02-07 03:57:21] 2026-02-07 02:56:11,830 | INFO     | sum of deviations: 112120009462.0
[2026-02-07 03:57:21] 2026-02-07 02:56:11,831 | INFO     | mean x: 1770421735.5
[2026-02-07 03:57:21] 2026-02-07 02:56:11,831 | INFO     | mean y: 2550435.3016759777
[2026-02-07 03:57:21] 2026-02-07 02:56:11,831 | INFO     | intersect: -13949426294.026173
[2026-02-07 03:57:21] 2026-02-07 02:56:11,831 | INFO     | chi2: 3.691751989528404
[2026-02-07 03:57:21] 2026-02-07 02:56:11,832 | INFO     | current chi2=3.691751989528404 (change=16.974038865806783 %)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,832 | INFO     | right removable region: 357
[2026-02-07 03:57:21] 2026-02-07 02:56:11,832 | INFO     | sum of square deviations: 14227353269.5
[2026-02-07 03:57:21] 2026-02-07 02:56:11,836 | INFO     | sum of deviations: -23328407174.500008
[2026-02-07 03:57:21] 2026-02-07 02:56:11,836 | INFO     | mean x: 1770422040.5
[2026-02-07 03:57:21] 2026-02-07 02:56:11,837 | INFO     | mean y: 2572832.4776536315
[2026-02-07 03:57:21] 2026-02-07 02:56:11,837 | INFO     | intersect: 2905510958.0131145
[2026-02-07 03:57:21] 2026-02-07 02:56:11,837 | INFO     | chi2: 1.0158182549311678
[2026-02-07 03:57:21] 2026-02-07 02:56:11,837 | INFO     | current chi2=1.0158182549311678 (change=77.15467149674566 %)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,838 | INFO     | sum of square deviations: 13639518992.0
[2026-02-07 03:57:21] 2026-02-07 02:56:11,842 | INFO     | sum of deviations: -41458280828.00001
[2026-02-07 03:57:21] 2026-02-07 02:56:11,842 | INFO     | mean x: 1770422193.0
[2026-02-07 03:57:21] 2026-02-07 02:56:11,842 | INFO     | mean y: 2577517.1416430594
[2026-02-07 03:57:21] 2026-02-07 02:56:11,842 | INFO     | intersect: 5383900751.822296
[2026-02-07 03:57:21] 2026-02-07 02:56:11,843 | INFO     | chi2: 0.9019180134479112
[2026-02-07 03:57:21] 2026-02-07 02:56:11,843 | INFO     | current chi2=0.9019180134479112 (change=11.212659442803037 %)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,843 | INFO     | left removable region: 20
[2026-02-07 03:57:21] 2026-02-07 02:56:11,844 | INFO     | sum of square deviations: 11867638328.0
[2026-02-07 03:57:21] 2026-02-07 02:56:11,847 | INFO     | sum of deviations: -1550431021.9999998
[2026-02-07 03:57:21] 2026-02-07 02:56:11,848 | INFO     | mean x: 1770422315.0
[2026-02-07 03:57:21] 2026-02-07 02:56:11,848 | INFO     | mean y: 2579643.1988130566
[2026-02-07 03:57:21] 2026-02-07 02:56:11,848 | INFO     | intersect: 233873992.02816808
[2026-02-07 03:57:21] 2026-02-07 02:56:11,848 | INFO     | chi2: 0.07331203627159816
[2026-02-07 03:57:21] 2026-02-07 02:56:11,849 | INFO     | current memory leak: -0.13 B/s (using 337 data points, chi2=0.07)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,849 | INFO     | could have reported an average CPU frequency of 1999 MHz (16 samples)
[2026-02-07 03:57:21] 2026-02-07 02:56:11,849 | INFO     | ..............................
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | . Timing measurements:
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | . get job = 0 s
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | . initial setup = 102 s
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | . payload setup = 114 s
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | . stage-in = 0 s
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | . payload execution = 22215 s
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | . stage-out = 7 s
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | . log creation = 1 s
[2026-02-07 03:57:21] 2026-02-07 02:56:11,850 | INFO     | ..............................
[2026-02-07 03:57:21] 2026-02-07 02:56:12,155 | INFO     | 
[2026-02-07 03:57:21] 2026-02-07 02:56:12,155 | INFO     | job summary report
[2026-02-07 03:57:21] 2026-02-07 02:56:12,155 | INFO     | --------------------------------------------------
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | PanDA job id: 7000923163
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | task id: 48431096
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | errors: (none)
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | pilot state: finished 
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | transexitcode: 0
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | exeerrorcode: 0
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | exeerrordiag: 
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | exitcode: 0
[2026-02-07 03:57:21] 2026-02-07 02:56:12,156 | INFO     | exitmsg: OK
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | cpuconsumptiontime: 88246 s
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | nevents: 400
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | neventsw: 0
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | pid: 10244
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | pgrp: 10244
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | corecount: 8
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | event service: False
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | sizes: {0: 2282648, 1: 2283049, 2: 2283109, 12: 2283137, 22333: 2317180, 22341: 2326208, 22344: 2326392, 22347: 2326586}
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | --------------------------------------------------
[2026-02-07 03:57:21] 2026-02-07 02:56:12,157 | INFO     | 
[2026-02-07 03:57:21] 2026-02-07 02:56:12,158 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2026-02-07 03:57:21] 2026-02-07 02:56:12,246 | INFO     | PID=5780 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-07 03:57:21] 2026-02-07 02:56:12,246 | INFO     | .. there are 9 such processes running
[2026-02-07 03:57:21] 2026-02-07 02:56:12,634 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | job 7000923163 has completed (purged errors)
[2026-02-07 03:57:21] 2026-02-07 02:56:12,636 | INFO     | overall cleanup function is called
[2026-02-07 03:57:21] 2026-02-07 02:56:13,644 | INFO     | --- collectZombieJob: --- 10, [10244]
[2026-02-07 03:57:21] 2026-02-07 02:56:13,644 | INFO     | zombie collector waiting for pid 10244
[2026-02-07 03:57:21] 2026-02-07 02:56:13,644 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 03:57:21] 2026-02-07 02:56:13,644 | INFO     | collected zombie processes
[2026-02-07 03:57:21] 2026-02-07 02:56:13,645 | INFO     | will attempt to kill all subprocesses of pid=10244
[2026-02-07 03:57:21] 2026-02-07 02:56:13,773 | INFO     | process IDs to be killed: [10244] (in reverse order)
[2026-02-07 03:57:21] 2026-02-07 02:56:14,509 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 03:57:21] 2026-02-07 02:56:14,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 03:57:21] 2026-02-07 02:56:14,512 | INFO     | did not find any defunct processes belonging to 10244
[2026-02-07 03:57:21] 2026-02-07 02:56:14,516 | INFO     | did not find any defunct processes belonging to 10244
[2026-02-07 03:57:21] 2026-02-07 02:56:14,516 | INFO     | ready for new job
[2026-02-07 03:57:21] 2026-02-07 02:56:14,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 03:57:21] 2026-02-07 02:56:14,519 | INFO     | **************************************
[2026-02-07 03:57:21] 2026-02-07 02:56:14,519 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 03:57:21] 2026-02-07 02:56:14,519 | INFO     | **************************************
[2026-02-07 03:57:21] 2026-02-07 02:56:14,519 | INFO     | 
[2026-02-07 03:57:21] 2026-02-07 02:56:14,520 | INFO     | pilot is running in a VM
[2026-02-07 03:57:21] 2026-02-07 02:56:14,520 | INFO     | architecture information:
[2026-02-07 03:57:21] 2026-02-07 02:56:14,528 | INFO     | executing command: cat /etc/os-release
[2026-02-07 03:57:21] 2026-02-07 02:56:14,723 | INFO     | cat /etc/os-release:
[2026-02-07 03:57:21] NAME="CentOS Linux"
[2026-02-07 03:57:21] VERSION="7 (Core)"
[2026-02-07 03:57:21] ID="centos"
[2026-02-07 03:57:21] ID_LIKE="rhel fedora"
[2026-02-07 03:57:21] VERSION_ID="7"
[2026-02-07 03:57:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 03:57:21] ANSI_COLOR="0;31"
[2026-02-07 03:57:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 03:57:21] HOME_URL="https://www.centos.org/"
[2026-02-07 03:57:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 03:57:21] 
[2026-02-07 03:57:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 03:57:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 03:57:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 03:57:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 03:57:21] 
[2026-02-07 03:57:21] 2026-02-07 02:56:14,724 | INFO     | **************************************
[2026-02-07 03:57:21] 2026-02-07 02:56:15,227 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2026-02-07 03:57:21] 2026-02-07 02:56:15,516 | INFO     | sufficient remaining disk space (487522828288 B)
[2026-02-07 03:57:21] 2026-02-07 02:56:15,516 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 03:57:21] 2026-02-07 02:56:15,516 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 03:57:21] 2026-02-07 02:56:15,516 | INFO     | update_server=False
[2026-02-07 03:57:21] 2026-02-07 02:56:15,516 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 03:57:21] 2026-02-07 02:56:15,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 03:57:21] 2026-02-07 02:56:15,517 | INFO     | aborting loop
[2026-02-07 03:57:21] 2026-02-07 02:56:15,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 03:57:21] 2026-02-07 02:56:15,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 03:57:21] 2026-02-07 02:56:15,743 | INFO     | all payload control threads have been joined
[2026-02-07 03:57:21] 2026-02-07 02:56:16,149 | INFO     | all data control threads have been joined
[2026-02-07 03:57:21] 2026-02-07 02:56:16,522 | INFO     | [job] retrieve thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:16,523 | INFO     | [job] job monitor thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:16,749 | INFO     | [payload] control thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:16,800 | INFO     | all job control threads have been joined
[2026-02-07 03:57:21] 2026-02-07 02:56:17,155 | INFO     | [data] control thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,172 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 03:57:21] 2026-02-07 02:56:17,465 | INFO     | [payload] validate_post thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,531 | INFO     | [data] copytool_out thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,562 | INFO     | [job] validate thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,683 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,698 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,752 | INFO     | [data] copytool_in thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,806 | INFO     | [job] control thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,914 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:17,941 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:18,058 | INFO     | [payload] failed_post thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:18,178 | INFO     | [job] queue monitor thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:19,532 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 03:57:21] 2026-02-07 02:56:44,532 | INFO     | PID=5780 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-07 03:57:21] 2026-02-07 02:56:44,532 | INFO     | .. there are 9 such processes running
[2026-02-07 03:57:21] 2026-02-07 02:56:44,533 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 03:57:21] 2026-02-07 02:56:44,533 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 03:57:21] 2026-02-07 02:56:44,533 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 03:57:21] 2026-02-07 02:57:00,214 [wrapper] supervise_pilot (15 min periods counter: 26)
[2026-02-07 03:57:21] 2026-02-07 02:57:11,304 | INFO     | [monitor] cgroup control has ended
[2026-02-07 03:57:21] 2026-02-07 02:57:11,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139657952651072)>', '<ExcThread(monitor, started 139657253721856)>']
[2026-02-07 03:57:21] 2026-02-07 02:57:12,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 03:57:21] 2026-02-07 02:57:12,698 | INFO     | [monitor] control thread has ended
[2026-02-07 03:57:21] 2026-02-07 02:57:16,780 | INFO     | all workflow threads have been joined
[2026-02-07 03:57:21] 2026-02-07 02:57:16,780 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 03:57:21] 2026-02-07 02:57:16,780 | INFO     | traces error code: 0
[2026-02-07 03:57:21] 2026-02-07 02:57:16,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 03:57:21] 2026-02-07 02:57:16,972 [wrapper] ==== pilot stdout END ====
[2026-02-07 03:57:21] 2026-02-07 02:57:17,054 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 03:57:21] 2026-02-07 02:57:17,130 [wrapper] pilotpid: 5780
[2026-02-07 03:57:21] 2026-02-07 02:57:17,185 [wrapper] Pilot exit status: 0
[2026-02-07 03:57:21] 2026-02-07 02:57:17,626 [wrapper] pandaids: 7000923163
[2026-02-07 03:57:21] 2026-02-07 02:57:18,504 [wrapper] cleanup supervisor_pilot 20306 5781
[2026-02-07 03:57:21] 2026-02-07 02:57:18,561 [wrapper] Test setup, not cleaning
[2026-02-07 03:57:21] 2026-02-07 02:57:18,663 [wrapper] apfmon messages muted
[2026-02-07 03:57:21] 2026-02-07 02:57:18,747 [wrapper] ==== wrapper stdout END ====
[2026-02-07 03:57:21] 2026-02-07 02:57:18,842 [wrapper] ==== wrapper stderr END ====
[2026-02-07 03:57:21]  *** Error codes and diagnostics ***
[2026-02-07 03:57:21]     "exeErrorCode": 0,
[2026-02-07 03:57:21]     "exeErrorDiag": "",
[2026-02-07 03:57:21]     "pilotErrorCode": 0,
[2026-02-07 03:57:21]     "pilotErrorDiag": "",
[2026-02-07 03:57:21]  *** Listing of results directory ***
[2026-02-07 03:57:21] total 948680
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc    584627 Feb  6 05:30 pilot3.tar.gz
[2026-02-07 03:57:21] -rwx------. 1 boinc boinc     36322 Feb  6 05:31 runpilot2-wrapper.sh
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc      5111 Feb  6 05:33 queuedata.json
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc       100 Feb  6 21:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 03:57:21] -rwxr-xr-x. 1 boinc boinc      7986 Feb  6 21:37 run_atlas
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc       105 Feb  6 21:37 job.xml
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc      6391 Feb  6 21:37 init_data.xml
[2026-02-07 03:57:21] -rw-r--r--. 2 boinc boinc 676281084 Feb  6 21:37 EVNT.48431094._000269.pool.root.1
[2026-02-07 03:57:21] -rw-r--r--. 2 boinc boinc     15845 Feb  6 21:37 start_atlas.sh
[2026-02-07 03:57:21] drwxrwx--x. 2 boinc boinc        68 Feb  6 21:37 shared
[2026-02-07 03:57:21] -rw-r--r--. 2 boinc boinc    597956 Feb  6 21:37 input.tar.gz
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc         0 Feb  6 21:37 boinc_lockfile
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc      2553 Feb  6 21:38 pandaJob.out
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc       415 Feb  6 21:43 workernode_map.json
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc   1009520 Feb  6 21:43 agis_schedconf.cvmfs.json
[2026-02-07 03:57:21] drwx------. 5 boinc boinc      4096 Feb  6 21:43 pilot3
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc 283928733 Feb  7 03:54 HITS.48431096._005889.pool.root.1
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc       531 Feb  7 03:55 boinc_task_state.xml
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc      1012 Feb  7 03:55 memory_monitor_summary.json
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc   1513088 Feb  7 03:56 agis_ddmendpoints.agis.ALL.json
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc    566442 Feb  7 03:56 log.48431096._005889.job.log.tgz.1
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc      6309 Feb  7 03:56 heartbeat.json
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc        95 Feb  7 03:56 pilot_heartbeat.json
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc      4880 Feb  7 03:57 pilotlog.txt
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc   3087655 Feb  7 03:57 log.48431096._005889.job.log.1
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc      8192 Feb  7 03:57 boinc_mmap_file
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc        28 Feb  7 03:57 wrapper_checkpoint.txt
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc       357 Feb  7 03:57 output.list
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc       620 Feb  7 03:57 runtime_log
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc   3676160 Feb  7 03:57 result.tar.gz
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc       657 Feb  7 03:57 VYJLDmZgS88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmAYXKDmkYluAo.diag
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc      8832 Feb  7 03:57 runtime_log.err
[2026-02-07 03:57:21] -rw-r--r--. 1 boinc boinc     21014 Feb  7 03:57 stderr.txt
[2026-02-07 03:57:21] HITS file was successfully produced:
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc 283928733 Feb  7 03:54 shared/HITS.pool.root.1
[2026-02-07 03:57:21]  *** Contents of shared directory: ***
[2026-02-07 03:57:21] total 941900
[2026-02-07 03:57:21] -rw-r--r--. 2 boinc boinc 676281084 Feb  6 21:37 ATLAS.root_0
[2026-02-07 03:57:21] -rw-r--r--. 2 boinc boinc     15845 Feb  6 21:37 start_atlas.sh
[2026-02-07 03:57:21] -rw-r--r--. 2 boinc boinc    597956 Feb  6 21:37 input.tar.gz
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc 283928733 Feb  7 03:54 HITS.pool.root.1
[2026-02-07 03:57:21] -rw-------. 1 boinc boinc   3676160 Feb  7 03:57 result.tar.gz
03:57:22 (1659): run_atlas exited; CPU time 88629.374909
03:57:22 (1659): called boinc_finish(0)

</stderr_txt>
]]>

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