Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:50:31 (1637050): wrapper (7.7.26015): starting
09:50:31 (1637050): wrapper: running run_atlas (--nthreads 3)
[2026-02-06 09:50:31] Arguments: --nthreads 3
[2026-02-06 09:50:31] Threads: 3
[2026-02-06 09:50:31] Checking for CVMFS
[2026-02-06 09:50:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 09:50:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 09:50:32] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 09:50:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 09:50:33] 2.9.2.0 1622115 81 49148 155934 2 50 25728970 36864000 0 130560 0 39919 99.956 4252 25461 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 09:50:33] CVMFS is ok
[2026-02-06 09:50:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 09:50:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 09:50:33] Further information can be found at the LHC@home message board.
[2026-02-06 09:50:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 09:50:33] Checking for apptainer binary...
[2026-02-06 09:50:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 09:50:33] Running /usr/bin/apptainer --version
[2026-02-06 09:50:33] apptainer version 1.4.1-1.1
[2026-02-06 09:50:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 09:50:33] magicA246a
[2026-02-06 09:50:33] apptainer works
[2026-02-06 09:50:33] Set ATHENA_PROC_NUMBER=3
[2026-02-06 09:50:33] Set ATHENA_CORE_NUMBER=3
[2026-02-06 09:50:33] Starting ATLAS job with PandaID=6996348985
[2026-02-06 09:50:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 11:11:54]  *** The last 200 lines of the pilot log: ***
[2026-02-06 11:11:54] 2026-02-06 10:11:35,068 | INFO     | overall cleanup function is called
[2026-02-06 11:11:54] 2026-02-06 10:11:36,073 | INFO     | --- collectZombieJob: --- 10, [1645515]
[2026-02-06 11:11:54] 2026-02-06 10:11:36,073 | INFO     | zombie collector waiting for pid 1645515
[2026-02-06 11:11:54] 2026-02-06 10:11:36,073 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 11:11:54] 2026-02-06 10:11:36,074 | INFO     | collected zombie processes
[2026-02-06 11:11:54] 2026-02-06 10:11:36,074 | INFO     | will attempt to kill all subprocesses of pid=1645515
[2026-02-06 11:11:54] 2026-02-06 10:11:36,128 | INFO     | process IDs to be killed: [1645515] (in reverse order)
[2026-02-06 11:11:54] 2026-02-06 10:11:36,157 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 11:11:54] 2026-02-06 10:11:36,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 11:11:54] 2026-02-06 10:11:36,159 | INFO     | did not find any defunct processes belonging to 1645515
[2026-02-06 11:11:54] 2026-02-06 10:11:36,160 | INFO     | did not find any defunct processes belonging to 1645515
[2026-02-06 11:11:54] 2026-02-06 10:11:36,160 | INFO     | ready for new job
[2026-02-06 11:11:54] 2026-02-06 10:11:36,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 11:11:54] 2026-02-06 10:11:36,161 | INFO     | **************************************
[2026-02-06 11:11:54] 2026-02-06 10:11:36,161 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 11:11:54] 2026-02-06 10:11:36,161 | INFO     | **************************************
[2026-02-06 11:11:54] 2026-02-06 10:11:36,161 | INFO     | 
[2026-02-06 11:11:54] 2026-02-06 10:11:36,162 | INFO     | architecture information:
[2026-02-06 11:11:54] 2026-02-06 10:11:36,162 | INFO     | executing command: cat /etc/os-release
[2026-02-06 11:11:54] 2026-02-06 10:11:36,171 | INFO     | cat /etc/os-release:
[2026-02-06 11:11:54] NAME="CentOS Linux"
[2026-02-06 11:11:54] VERSION="7 (Core)"
[2026-02-06 11:11:54] ID="centos"
[2026-02-06 11:11:54] ID_LIKE="rhel fedora"
[2026-02-06 11:11:54] VERSION_ID="7"
[2026-02-06 11:11:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 11:11:54] ANSI_COLOR="0;31"
[2026-02-06 11:11:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 11:11:54] HOME_URL="https://www.centos.org/"
[2026-02-06 11:11:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 11:11:54] 
[2026-02-06 11:11:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 11:11:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 11:11:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 11:11:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 11:11:54] 
[2026-02-06 11:11:54] 2026-02-06 10:11:36,171 | INFO     | **************************************
[2026-02-06 11:11:54] 2026-02-06 10:11:36,673 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 11:11:54] 2026-02-06 10:11:36,684 | INFO     | sufficient remaining disk space (278911778816 B)
[2026-02-06 11:11:54] 2026-02-06 10:11:36,684 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | INFO     | update_server=False
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | INFO     | aborting loop
[2026-02-06 11:11:54] 2026-02-06 10:11:36,685 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 11:11:54] 2026-02-06 10:11:36,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 11:11:54] 2026-02-06 10:11:36,686 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 11:11:54] 2026-02-06 10:11:37,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 11:11:54] 2026-02-06 10:11:37,197 | INFO     | all job control threads have been joined
[2026-02-06 11:11:54] 2026-02-06 10:11:37,268 | INFO     | all payload control threads have been joined
[2026-02-06 11:11:54] 2026-02-06 10:11:37,479 | INFO     | all data control threads have been joined
[2026-02-06 11:11:54] 2026-02-06 10:11:37,690 | INFO     | [job] retrieve thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:37,690 | INFO     | [job] job monitor thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:37,690 | INFO     | [job] queue monitor thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,109 | INFO     | [payload] validate_post thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,203 | INFO     | [job] control thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,274 | INFO     | [payload] control thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,328 | INFO     | [job] validate thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,396 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,420 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,485 | INFO     | [data] control thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,565 | INFO     | [data] copytool_in thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:38,674 | INFO     | [payload] failed_post thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:39,024 | INFO     | [data] copytool_out thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:39,183 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:40,691 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:46,765 | INFO     | job.realtimelogging is not enabled
[2026-02-06 11:11:54] 2026-02-06 10:11:47,535 | INFO     | [monitor] cgroup control has ended
[2026-02-06 11:11:54] 2026-02-06 10:11:47,770 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 11:11:54] 2026-02-06 10:11:49,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622179776320)>', '<ExcThread(monitor, started 139621837027072)>']
[2026-02-06 11:11:54] 2026-02-06 10:11:49,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 11:11:54] 2026-02-06 10:11:49,748 | INFO     | [monitor] control thread has ended
[2026-02-06 11:11:54] 2026-02-06 10:11:54,024 | INFO     | all workflow threads have been joined
[2026-02-06 11:11:54] 2026-02-06 10:11:54,024 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 11:11:54] 2026-02-06 10:11:54,024 | INFO     | traces error code: 0
[2026-02-06 11:11:54] 2026-02-06 10:11:54,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 11:11:54] 2026-02-06 10:11:54,076 [wrapper] ==== pilot stdout END ====
[2026-02-06 11:11:54] 2026-02-06 10:11:54,079 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 11:11:54] 2026-02-06 10:11:54,081 [wrapper] pilotpid: 1641092
[2026-02-06 11:11:54] 2026-02-06 10:11:54,083 [wrapper] Pilot exit status: 0
[2026-02-06 11:11:54] 2026-02-06 10:11:54,091 [wrapper] pandaids: 6996348985
[2026-02-06 11:11:54] 2026-02-06 10:11:54,110 [wrapper] cleanup supervisor_pilot 1651617 1641093
[2026-02-06 11:11:54] 2026-02-06 10:11:54,112 [wrapper] Test setup, not cleaning
[2026-02-06 11:11:54] 2026-02-06 10:11:54,115 [wrapper] apfmon messages muted
[2026-02-06 11:11:54] 2026-02-06 10:11:54,117 [wrapper] ==== wrapper stdout END ====
[2026-02-06 11:11:54] 2026-02-06 10:11:54,119 [wrapper] ==== wrapper stderr END ====
[2026-02-06 11:11:54]  *** Error codes and diagnostics ***
[2026-02-06 11:11:54]     "exeErrorCode": 0,
[2026-02-06 11:11:54]     "exeErrorDiag": "",
[2026-02-06 11:11:54]     "pilotErrorCode": 0,
[2026-02-06 11:11:54]     "pilotErrorDiag": "",
[2026-02-06 11:11:54]  *** Listing of results directory ***
[2026-02-06 11:11:54] total 663452
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc    584627 Feb  6 05:58 pilot3.tar.gz
[2026-02-06 11:11:54] -rwx------ 1 boinc boinc     36322 Feb  6 06:09 runpilot2-wrapper.sh
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc      5111 Feb  6 06:09 queuedata.json
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc       100 Feb  6 09:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 11:11:54] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 09:50 run_atlas
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc       105 Feb  6 09:50 job.xml
[2026-02-06 11:11:54] -rw-r--r-- 2 boinc boinc 490939273 Feb  6 09:50 EVNT.48442096._000050.pool.root.1
[2026-02-06 11:11:54] -rw-r--r-- 2 boinc boinc    597949 Feb  6 09:50 input.tar.gz
[2026-02-06 11:11:54] -rw-r--r-- 2 boinc boinc     15845 Feb  6 09:50 start_atlas.sh
[2026-02-06 11:11:54] drwxrwx--x 2 boinc boinc      4096 Feb  6 09:50 shared
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc         0 Feb  6 09:50 boinc_setup_complete
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc      6447 Feb  6 09:50 init_data.xml
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc         0 Feb  6 09:50 boinc_lockfile
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc      2527 Feb  6 09:50 pandaJob.out
[2026-02-06 11:11:54] -rw------- 1 boinc boinc   1007453 Feb  6 09:50 agis_schedconf.cvmfs.json
[2026-02-06 11:11:54] -rw------- 1 boinc boinc   1513144 Feb  6 09:50 agis_ddmendpoints.agis.ALL.json
[2026-02-06 11:11:54] -rw------- 1 boinc boinc       428 Feb  6 09:50 workernode_map.json
[2026-02-06 11:11:54] drwx------ 5 boinc boinc      4096 Feb  6 09:50 pilot3
[2026-02-06 11:11:54] -rw------- 1 boinc boinc        95 Feb  6 11:11 pilot_heartbeat.json
[2026-02-06 11:11:54] -rw------- 1 boinc boinc 182555798 Feb  6 11:11 HITS.48442098._002471.pool.root.1
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc       530 Feb  6 11:11 boinc_task_state.xml
[2026-02-06 11:11:54] -rw------- 1 boinc boinc      1031 Feb  6 11:11 memory_monitor_summary.json
[2026-02-06 11:11:54] -rw------- 1 boinc boinc    262901 Feb  6 11:11 log.48442098._002471.job.log.tgz.1
[2026-02-06 11:11:54] -rw------- 1 boinc boinc      6313 Feb  6 11:11 heartbeat.json
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc      8192 Feb  6 11:11 boinc_mmap_file
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc        27 Feb  6 11:11 wrapper_checkpoint.txt
[2026-02-06 11:11:54] -rw------- 1 boinc boinc      4624 Feb  6 11:11 pilotlog.txt
[2026-02-06 11:11:54] -rw------- 1 boinc boinc    712359 Feb  6 11:11 log.48442098._002471.job.log.1
[2026-02-06 11:11:54] -rw------- 1 boinc boinc       357 Feb  6 11:11 output.list
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc       620 Feb  6 11:11 runtime_log
[2026-02-06 11:11:54] -rw------- 1 boinc boinc    993280 Feb  6 11:11 result.tar.gz
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc      8916 Feb  6 11:11 runtime_log.err
[2026-02-06 11:11:54] -rw------- 1 boinc boinc       661 Feb  6 11:11 mkNMDm2GT88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmNzXKDm2gZRwn.diag
[2026-02-06 11:11:54] -rw-r--r-- 1 boinc boinc     10719 Feb  6 11:11 stderr.txt
[2026-02-06 11:11:54] HITS file was successfully produced:
[2026-02-06 11:11:54] -rw------- 1 boinc boinc 182555798 Feb  6 11:11 shared/HITS.pool.root.1
[2026-02-06 11:11:54]  *** Contents of shared directory: ***
[2026-02-06 11:11:54] total 659296
[2026-02-06 11:11:54] -rw-r--r-- 2 boinc boinc 490939273 Feb  6 09:50 ATLAS.root_0
[2026-02-06 11:11:54] -rw-r--r-- 2 boinc boinc    597949 Feb  6 09:50 input.tar.gz
[2026-02-06 11:11:54] -rw-r--r-- 2 boinc boinc     15845 Feb  6 09:50 start_atlas.sh
[2026-02-06 11:11:54] -rw------- 1 boinc boinc 182555798 Feb  6 11:11 HITS.pool.root.1
[2026-02-06 11:11:54] -rw------- 1 boinc boinc    993280 Feb  6 11:11 result.tar.gz
11:11:55 (1637050): run_atlas exited; CPU time 13943.209395
11:11:55 (1637050): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN