Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:46:14 (2621904): wrapper (7.7.26015): starting
07:46:14 (2621904): wrapper: running run_atlas (--nthreads 2)
[2026-02-06 07:46:14] Arguments: --nthreads 2
[2026-02-06 07:46:14] Threads: 2
[2026-02-06 07:46:14] Checking for CVMFS
[2026-02-06 07:46:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 07:46:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 07:46:15] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 07:46:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 07:46:16] 2.9.2.0 2622099 0 29976 155931 4 1 22542750 36864000 0 130560 0 0 0.000 1336 10045 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-06 07:46:16] CVMFS is ok
[2026-02-06 07:46:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 07:46:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 07:46:16] Further information can be found at the LHC@home message board.
[2026-02-06 07:46:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 07:46:16] Checking for apptainer binary...
[2026-02-06 07:46:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 07:46:16] Running /usr/bin/apptainer --version
[2026-02-06 07:46:16] apptainer version 1.4.1-1.1
[2026-02-06 07:46:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 07:46:16] thA314b
[2026-02-06 07:46:16] apptainer works
[2026-02-06 07:46:16] Set ATHENA_PROC_NUMBER=2
[2026-02-06 07:46:16] Set ATHENA_CORE_NUMBER=2
[2026-02-06 07:46:16] Starting ATLAS job with PandaID=6995864016
[2026-02-06 07:46:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 10:04:59]  *** The last 200 lines of the pilot log: ***
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | job 6995864016 has completed (purged errors)
[2026-02-06 10:04:59] 2026-02-06 09:04:39,864 | INFO     | overall cleanup function is called
[2026-02-06 10:04:59] 2026-02-06 09:04:40,869 | INFO     | --- collectZombieJob: --- 10, [2630571]
[2026-02-06 10:04:59] 2026-02-06 09:04:40,870 | INFO     | zombie collector waiting for pid 2630571
[2026-02-06 10:04:59] 2026-02-06 09:04:40,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 10:04:59] 2026-02-06 09:04:40,870 | INFO     | collected zombie processes
[2026-02-06 10:04:59] 2026-02-06 09:04:40,870 | INFO     | will attempt to kill all subprocesses of pid=2630571
[2026-02-06 10:04:59] 2026-02-06 09:04:40,899 | INFO     | process IDs to be killed: [2630571] (in reverse order)
[2026-02-06 10:04:59] 2026-02-06 09:04:40,920 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 10:04:59] 2026-02-06 09:04:40,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 10:04:59] 2026-02-06 09:04:40,921 | INFO     | did not find any defunct processes belonging to 2630571
[2026-02-06 10:04:59] 2026-02-06 09:04:40,922 | INFO     | did not find any defunct processes belonging to 2630571
[2026-02-06 10:04:59] 2026-02-06 09:04:40,922 | INFO     | ready for new job
[2026-02-06 10:04:59] 2026-02-06 09:04:40,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 10:04:59] 2026-02-06 09:04:40,922 | INFO     | **************************************
[2026-02-06 10:04:59] 2026-02-06 09:04:40,922 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 10:04:59] 2026-02-06 09:04:40,922 | INFO     | **************************************
[2026-02-06 10:04:59] 2026-02-06 09:04:40,922 | INFO     | 
[2026-02-06 10:04:59] 2026-02-06 09:04:40,923 | INFO     | architecture information:
[2026-02-06 10:04:59] 2026-02-06 09:04:40,923 | INFO     | executing command: cat /etc/os-release
[2026-02-06 10:04:59] 2026-02-06 09:04:40,932 | INFO     | cat /etc/os-release:
[2026-02-06 10:04:59] NAME="CentOS Linux"
[2026-02-06 10:04:59] VERSION="7 (Core)"
[2026-02-06 10:04:59] ID="centos"
[2026-02-06 10:04:59] ID_LIKE="rhel fedora"
[2026-02-06 10:04:59] VERSION_ID="7"
[2026-02-06 10:04:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 10:04:59] ANSI_COLOR="0;31"
[2026-02-06 10:04:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 10:04:59] HOME_URL="https://www.centos.org/"
[2026-02-06 10:04:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 10:04:59] 
[2026-02-06 10:04:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 10:04:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 10:04:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 10:04:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 10:04:59] 
[2026-02-06 10:04:59] 2026-02-06 09:04:40,932 | INFO     | **************************************
[2026-02-06 10:04:59] 2026-02-06 09:04:41,436 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | INFO     | sufficient remaining disk space (501568503808 B)
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | INFO     | update_server=False
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 10:04:59] 2026-02-06 09:04:41,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 10:04:59] 2026-02-06 09:04:41,449 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 10:04:59] 2026-02-06 09:04:41,648 | INFO     | all data control threads have been joined
[2026-02-06 10:04:59] 2026-02-06 09:04:41,713 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-06 10:04:59] 2026-02-06 09:04:41,714 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-06 10:04:59] 2026-02-06 09:04:41,714 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 10:04:59] 2026-02-06 09:04:41,714 | INFO     | will abort loop
[2026-02-06 10:04:59] 2026-02-06 09:04:41,733 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 10:04:59] 2026-02-06 09:04:41,743 | INFO     | all payload control threads have been joined
[2026-02-06 10:04:59] 2026-02-06 09:04:42,326 | INFO     | all job control threads have been joined
[2026-02-06 10:04:59] 2026-02-06 09:04:42,451 | INFO     | [job] retrieve thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:42,454 | INFO     | [job] queue monitor thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:42,654 | INFO     | [data] control thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:42,720 | INFO     | [job] job monitor thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:42,749 | INFO     | [payload] control thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:42,981 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:43,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 10:04:59] 2026-02-06 09:04:43,143 | INFO     | [job] validate thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:43,238 | INFO     | [data] copytool_in thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:43,289 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:43,332 | INFO     | [job] control thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:43,348 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:43,608 | INFO     | [payload] validate_post thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:43,739 | INFO     | [data] copytool_out thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:43,997 | INFO     | [payload] failed_post thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:47,112 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:50,351 | INFO     | [monitor] cgroup control has ended
[2026-02-06 10:04:59] 2026-02-06 09:04:51,898 | INFO     | job.realtimelogging is not enabled
[2026-02-06 10:04:59] 2026-02-06 09:04:52,904 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 10:04:59] 2026-02-06 09:04:54,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429431535424)>', '<ExcThread(monitor, started 140428569466624)>']
[2026-02-06 10:04:59] 2026-02-06 09:04:54,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 10:04:59] 2026-02-06 09:04:54,519 | INFO     | [monitor] control thread has ended
[2026-02-06 10:04:59] 2026-02-06 09:04:59,340 | INFO     | all workflow threads have been joined
[2026-02-06 10:04:59] 2026-02-06 09:04:59,341 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 10:04:59] 2026-02-06 09:04:59,341 | INFO     | traces error code: 0
[2026-02-06 10:04:59] 2026-02-06 09:04:59,341 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 10:04:59] 2026-02-06 09:04:59,382 [wrapper] ==== pilot stdout END ====
[2026-02-06 10:04:59] 2026-02-06 09:04:59,385 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 10:04:59] 2026-02-06 09:04:59,387 [wrapper] pilotpid: 2626162
[2026-02-06 10:04:59] 2026-02-06 09:04:59,388 [wrapper] Pilot exit status: 0
[2026-02-06 10:04:59] 2026-02-06 09:04:59,394 [wrapper] pandaids: 6995864016
[2026-02-06 10:04:59] 2026-02-06 09:04:59,406 [wrapper] cleanup supervisor_pilot 2635640 2626163
[2026-02-06 10:04:59] 2026-02-06 09:04:59,408 [wrapper] Test setup, not cleaning
[2026-02-06 10:04:59] 2026-02-06 09:04:59,410 [wrapper] apfmon messages muted
[2026-02-06 10:04:59] 2026-02-06 09:04:59,411 [wrapper] ==== wrapper stdout END ====
[2026-02-06 10:04:59] 2026-02-06 09:04:59,413 [wrapper] ==== wrapper stderr END ====
[2026-02-06 10:04:59]  *** Error codes and diagnostics ***
[2026-02-06 10:04:59]     "exeErrorCode": 0,
[2026-02-06 10:04:59]     "exeErrorDiag": "",
[2026-02-06 10:04:59]     "pilotErrorCode": 0,
[2026-02-06 10:04:59]     "pilotErrorDiag": "",
[2026-02-06 10:04:59]  *** Listing of results directory ***
[2026-02-06 10:04:59] total 732748
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc    584627 Feb  6 05:58 pilot3.tar.gz
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc      5111 Feb  6 06:07 queuedata.json
[2026-02-06 10:04:59] -rwx------ 1 boinc boinc     36322 Feb  6 06:08 runpilot2-wrapper.sh
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc       100 Feb  6 07:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 10:04:59] -rwxr-xr-x 1 boinc boinc      7986 Feb  6 07:46 run_atlas
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc       105 Feb  6 07:46 job.xml
[2026-02-06 10:04:59] -rw-r--r-- 2 boinc boinc 542455101 Feb  6 07:46 EVNT.48318024._000072.pool.root.1
[2026-02-06 10:04:59] -rw-r--r-- 2 boinc boinc    597963 Feb  6 07:46 input.tar.gz
[2026-02-06 10:04:59] -rw-r--r-- 2 boinc boinc     15845 Feb  6 07:46 start_atlas.sh
[2026-02-06 10:04:59] drwxrwx--x 2 boinc boinc      4096 Feb  6 07:46 shared
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc         0 Feb  6 07:46 boinc_setup_complete
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc      6207 Feb  6 07:46 init_data.xml
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc         0 Feb  6 07:46 boinc_lockfile
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc      2526 Feb  6 07:46 pandaJob.out
[2026-02-06 10:04:59] -rw------- 1 boinc boinc   1007445 Feb  6 07:46 agis_schedconf.cvmfs.json
[2026-02-06 10:04:59] -rw------- 1 boinc boinc   1513144 Feb  6 07:46 agis_ddmendpoints.agis.ALL.json
[2026-02-06 10:04:59] -rw------- 1 boinc boinc       419 Feb  6 07:46 workernode_map.json
[2026-02-06 10:04:59] drwx------ 5 boinc boinc      4096 Feb  6 07:46 pilot3
[2026-02-06 10:04:59] -rw------- 1 boinc boinc        95 Feb  6 10:04 pilot_heartbeat.json
[2026-02-06 10:04:59] -rw------- 1 boinc boinc 201015871 Feb  6 10:04 HITS.48318026._003565.pool.root.1
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc       530 Feb  6 10:04 boinc_task_state.xml
[2026-02-06 10:04:59] -rw------- 1 boinc boinc      1014 Feb  6 10:04 memory_monitor_summary.json
[2026-02-06 10:04:59] -rw------- 1 boinc boinc    278218 Feb  6 10:04 log.48318026._003565.job.log.tgz.1
[2026-02-06 10:04:59] -rw------- 1 boinc boinc      6293 Feb  6 10:04 heartbeat.json
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc      8192 Feb  6 10:04 boinc_mmap_file
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc        27 Feb  6 10:04 wrapper_checkpoint.txt
[2026-02-06 10:04:59] -rw------- 1 boinc boinc      4810 Feb  6 10:04 pilotlog.txt
[2026-02-06 10:04:59] -rw------- 1 boinc boinc   1186283 Feb  6 10:04 log.48318026._003565.job.log.1
[2026-02-06 10:04:59] -rw------- 1 boinc boinc       357 Feb  6 10:04 output.list
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc       620 Feb  6 10:04 runtime_log
[2026-02-06 10:04:59] -rw------- 1 boinc boinc   1484800 Feb  6 10:04 result.tar.gz
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc      8901 Feb  6 10:04 runtime_log.err
[2026-02-06 10:04:59] -rw------- 1 boinc boinc       658 Feb  6 10:04 WtRKDmAGT88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmLuXKDmclS9Xo.diag
[2026-02-06 10:04:59] -rw-r--r-- 1 boinc boinc     12372 Feb  6 10:04 stderr.txt
[2026-02-06 10:04:59] HITS file was successfully produced:
[2026-02-06 10:04:59] -rw------- 1 boinc boinc 201015871 Feb  6 10:04 shared/HITS.pool.root.1
[2026-02-06 10:04:59]  *** Contents of shared directory: ***
[2026-02-06 10:04:59] total 728112
[2026-02-06 10:04:59] -rw-r--r-- 2 boinc boinc 542455101 Feb  6 07:46 ATLAS.root_0
[2026-02-06 10:04:59] -rw-r--r-- 2 boinc boinc    597963 Feb  6 07:46 input.tar.gz
[2026-02-06 10:04:59] -rw-r--r-- 2 boinc boinc     15845 Feb  6 07:46 start_atlas.sh
[2026-02-06 10:04:59] -rw------- 1 boinc boinc 201015871 Feb  6 10:04 HITS.pool.root.1
[2026-02-06 10:04:59] -rw------- 1 boinc boinc   1484800 Feb  6 10:04 result.tar.gz
10:05:01 (2621904): run_atlas exited; CPU time 16164.560350
10:05:01 (2621904): called boinc_finish(0)

</stderr_txt>
]]>

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