Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:51:33 (1562429): wrapper (7.7.26015): starting
01:51:33 (1562429): wrapper: running run_atlas (--nthreads 4)
[2026-02-08 01:51:33] Arguments: --nthreads 4
[2026-02-08 01:51:33] Threads: 4
[2026-02-08 01:51:33] Checking for CVMFS
[2026-02-08 01:51:33] No cvmfs_config command found, will try listing directly
[2026-02-08 01:51:33] CVMFS is ok
[2026-02-08 01:51:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 01:51:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 01:51:33] Further information can be found at the LHC@home message board.
[2026-02-08 01:51:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 01:51:33] Checking for apptainer binary...
[2026-02-08 01:51:33] which: no apptainer in ((null))
[2026-02-08 01:51:33] apptainer is not installed, using version from CVMFS
[2026-02-08 01:51:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 01:51:33] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-02-08 01:51:33] apptainer works
[2026-02-08 01:51:33] Set ATHENA_PROC_NUMBER=4
[2026-02-08 01:51:33] Set ATHENA_CORE_NUMBER=4
[2026-02-08 01:51:34] Starting ATLAS job with PandaID=6995859879
[2026-02-08 01:51:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 04:54:24]  *** The last 200 lines of the pilot log: ***
[2026-02-08 04:54:24] 2026-02-08 03:53:14,665 | INFO     | preparing for final server update for job 6995859879 in state='finished'
[2026-02-08 04:54:24] 2026-02-08 03:53:14,665 | INFO     | reading metadata from: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6995859879/jobReport.json
[2026-02-08 04:54:24] 2026-02-08 03:53:14,671 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot128/slots/0/workernode_map.json
[2026-02-08 04:54:24] 2026-02-08 03:53:14,672 | INFO     | this job has now completed (state=finished)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,672 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,672 | INFO     | log transfer has been attempted: DONE
[2026-02-08 04:54:24] 2026-02-08 03:53:14,672 | INFO     | job 6995859879 has finished - writing final server update
[2026-02-08 04:54:24] 2026-02-08 03:53:14,673 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3265643/.job.ad'
[2026-02-08 04:54:24] 2026-02-08 03:53:14,673 | INFO     | total number of processed events: 400 (read)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,704 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6995859879/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,705 | INFO     | extracted standard info from prmon json
[2026-02-08 04:54:24] 2026-02-08 03:53:14,705 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 04:54:24] 2026-02-08 03:53:14,705 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 04:54:24] 2026-02-08 03:53:14,706 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 04:54:24] 2026-02-08 03:53:14,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 04:54:24] 2026-02-08 03:53:14,709 | INFO     | fitting pss+swap vs Time
[2026-02-08 04:54:24] 2026-02-08 03:53:14,709 | INFO     | sum of square deviations: 1748737904.5
[2026-02-08 04:54:24] 2026-02-08 03:53:14,711 | INFO     | sum of deviations: 9384171740.999996
[2026-02-08 04:54:24] 2026-02-08 03:53:14,711 | INFO     | mean x: 1770517343.5
[2026-02-08 04:54:24] 2026-02-08 03:53:14,711 | INFO     | mean y: 2346933.224719101
[2026-02-08 04:54:24] 2026-02-08 03:53:14,711 | INFO     | intersect: -9498698809.003647
[2026-02-08 04:54:24] 2026-02-08 03:53:14,711 | INFO     | chi2: 1.3400072175616442
[2026-02-08 04:54:24] 2026-02-08 03:53:14,712 | INFO     | sum of square deviations: 1605470102.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,713 | INFO     | sum of deviations: 9097711227.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,713 | INFO     | mean x: 1770517191.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,713 | INFO     | mean y: 2346628.0173410405
[2026-02-08 04:54:24] 2026-02-08 03:53:14,713 | INFO     | intersect: -10030636300.840216
[2026-02-08 04:54:24] 2026-02-08 03:53:14,713 | INFO     | chi2: 1.3408694893918913
[2026-02-08 04:54:24] 2026-02-08 03:53:14,713 | INFO     | current chi2=1.3408694893918913 (change=-0.06434829745291666 %)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,713 | INFO     | right removable region: 172
[2026-02-08 04:54:24] 2026-02-08 03:53:14,714 | INFO     | sum of square deviations: 1605470102.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,714 | INFO     | sum of deviations: -10694283747.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,715 | INFO     | mean x: 1770517496.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,715 | INFO     | mean y: 2367926.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,715 | INFO     | intersect: 11796057797.685905
[2026-02-08 04:54:24] 2026-02-08 03:53:14,715 | INFO     | chi2: 0.0695182860462814
[2026-02-08 04:54:24] 2026-02-08 03:53:14,715 | INFO     | current chi2=0.0695182860462814 (change=94.81209614879681 %)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,715 | INFO     | sum of square deviations: 1470248962.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,716 | INFO     | sum of deviations: -7046390752.5
[2026-02-08 04:54:24] 2026-02-08 03:53:14,716 | INFO     | mean x: 1770517648.5
[2026-02-08 04:54:24] 2026-02-08 03:53:14,717 | INFO     | mean y: 2363805.8154761903
[2026-02-08 04:54:24] 2026-02-08 03:53:14,717 | INFO     | intersect: 8487837700.357457
[2026-02-08 04:54:24] 2026-02-08 03:53:14,717 | INFO     | chi2: 0.05922916526913166
[2026-02-08 04:54:24] 2026-02-08 03:53:14,717 | INFO     | current chi2=0.05922916526913166 (change=14.800596163000638 %)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,717 | INFO     | left removable region: 20
[2026-02-08 04:54:24] 2026-02-08 03:53:14,717 | INFO     | sum of square deviations: 1088905998.0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,718 | INFO     | sum of deviations: 1295719757.5
[2026-02-08 04:54:24] 2026-02-08 03:53:14,718 | INFO     | mean x: 1770517770.5
[2026-02-08 04:54:24] 2026-02-08 03:53:14,718 | INFO     | mean y: 2353175.3092105263
[2026-02-08 04:54:24] 2026-02-08 03:53:14,719 | INFO     | intersect: -2104435528.6333501
[2026-02-08 04:54:24] 2026-02-08 03:53:14,719 | INFO     | chi2: 0.014131742548737196
[2026-02-08 04:54:24] 2026-02-08 03:53:14,719 | INFO     | current memory leak: 1.19 B/s (using 152 data points, chi2=0.01)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,719 | INFO     | could have reported an average CPU frequency of 2727 MHz (10 samples)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,719 | INFO     | ..............................
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | . Timing measurements:
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | . get job = 0 s
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | . initial setup = 8 s
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | . payload setup = 9 s
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | . stage-in = 0 s
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | . payload execution = 10849 s
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | . stage-out = 1 s
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | . log creation = 0 s
[2026-02-08 04:54:24] 2026-02-08 03:53:14,720 | INFO     | ..............................
[2026-02-08 04:54:24] 2026-02-08 03:53:14,806 | INFO     | 
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | job summary report
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | --------------------------------------------------
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | PanDA job id: 6995859879
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | task id: 48318026
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | errors: (none)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | pilot state: finished 
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | transexitcode: 0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | exeerrorcode: 0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,807 | INFO     | exeerrordiag: 
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | exitcode: 0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | exitmsg: OK
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | cpuconsumptiontime: 42387 s
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | nevents: 400
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | neventsw: 0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | pid: 1571861
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | pgrp: 1571861
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | corecount: 4
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | event service: False
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | sizes: {0: 2281995, 1: 2283125, 12: 2283125, 10861: 2312619, 10862: 2312618, 10863: 2321696, 10866: 2322074}
[2026-02-08 04:54:24] 2026-02-08 03:53:14,808 | INFO     | --------------------------------------------------
[2026-02-08 04:54:24] 2026-02-08 03:53:14,809 | INFO     | 
[2026-02-08 04:54:24] 2026-02-08 03:53:14,809 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2026-02-08 04:54:24] 2026-02-08 03:53:14,839 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,839 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,840 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | job 6995859879 has completed (purged errors)
[2026-02-08 04:54:24] 2026-02-08 03:53:14,841 | INFO     | overall cleanup function is called
[2026-02-08 04:54:24] 2026-02-08 03:53:15,783 | INFO     | PID=1566793 has CPU usage=17.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-08 04:54:24] 2026-02-08 03:53:15,783 | INFO     | .. there are 6 such processes running
[2026-02-08 04:54:24] 2026-02-08 03:53:15,850 | INFO     | --- collectZombieJob: --- 10, [1571861]
[2026-02-08 04:54:24] 2026-02-08 03:53:15,850 | INFO     | zombie collector waiting for pid 1571861
[2026-02-08 04:54:24] 2026-02-08 03:53:15,850 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 04:54:24] 2026-02-08 03:53:15,850 | INFO     | collected zombie processes
[2026-02-08 04:54:24] 2026-02-08 03:53:15,850 | INFO     | will attempt to kill all subprocesses of pid=1571861
[2026-02-08 04:54:24] 2026-02-08 03:53:16,636 | INFO     | process IDs to be killed: [1571861] (in reverse order)
[2026-02-08 04:54:24] 2026-02-08 03:53:16,873 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 04:54:24] 2026-02-08 03:53:16,874 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 04:54:24] 2026-02-08 03:53:16,906 | INFO     | did not find any defunct processes belonging to 1571861
[2026-02-08 04:54:24] 2026-02-08 03:53:16,937 | INFO     | did not find any defunct processes belonging to 1571861
[2026-02-08 04:54:24] 2026-02-08 03:53:16,937 | INFO     | ready for new job
[2026-02-08 04:54:24] 2026-02-08 03:53:16,937 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 04:54:24] 2026-02-08 03:53:16,939 | INFO     | **************************************
[2026-02-08 04:54:24] 2026-02-08 03:53:16,940 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 04:54:24] 2026-02-08 03:53:16,940 | INFO     | **************************************
[2026-02-08 04:54:24] 2026-02-08 03:53:16,940 | INFO     | 
[2026-02-08 04:54:24] 2026-02-08 03:53:16,948 | INFO     | architecture information:
[2026-02-08 04:54:24] 2026-02-08 03:53:16,948 | INFO     | executing command: cat /etc/os-release
[2026-02-08 04:54:24] 2026-02-08 03:53:16,970 | INFO     | cat /etc/os-release:
[2026-02-08 04:54:24] NAME="CentOS Linux"
[2026-02-08 04:54:24] VERSION="7 (Core)"
[2026-02-08 04:54:24] ID="centos"
[2026-02-08 04:54:24] ID_LIKE="rhel fedora"
[2026-02-08 04:54:24] VERSION_ID="7"
[2026-02-08 04:54:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 04:54:24] ANSI_COLOR="0;31"
[2026-02-08 04:54:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 04:54:24] HOME_URL="https://www.centos.org/"
[2026-02-08 04:54:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 04:54:24] 
[2026-02-08 04:54:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 04:54:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 04:54:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 04:54:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 04:54:24] 
[2026-02-08 04:54:24] 2026-02-08 03:53:16,971 | INFO     | **************************************
[2026-02-08 04:54:24] 2026-02-08 03:53:17,474 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2026-02-08 04:54:24] 2026-02-08 03:53:17,495 | INFO     | sufficient remaining disk space (3226563772416 B)
[2026-02-08 04:54:24] 2026-02-08 03:53:17,498 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 04:54:24] 2026-02-08 03:53:17,499 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 04:54:24] 2026-02-08 03:53:17,499 | INFO     | update_server=False
[2026-02-08 04:54:24] 2026-02-08 03:53:17,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 04:54:24] 2026-02-08 03:53:17,499 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 04:54:24] 2026-02-08 03:53:17,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 04:54:24] 2026-02-08 03:53:17,500 | INFO     | aborting loop
[2026-02-08 04:54:24] 2026-02-08 03:53:17,592 | INFO     | all data control threads have been joined
[2026-02-08 04:54:24] 2026-02-08 03:53:17,592 | INFO     | all payload control threads have been joined
[2026-02-08 04:54:24] 2026-02-08 03:53:17,690 | INFO     | all job control threads have been joined
[2026-02-08 04:54:24] 2026-02-08 03:53:18,504 | INFO     | [job] retrieve thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:18,505 | INFO     | [job] job monitor thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:18,597 | INFO     | [payload] control thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:18,597 | INFO     | [data] control thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:18,602 | INFO     | [job] validate thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:18,696 | INFO     | [job] control thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:18,807 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:18,964 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:19,256 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:19,313 | INFO     | [payload] failed_post thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:19,377 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:19,377 | INFO     | [data] copytool_in thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:19,466 | INFO     | [payload] validate_post thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:19,505 | INFO     | [data] copytool_out thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:19,816 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 04:54:24] 2026-02-08 03:53:20,458 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 04:54:24] 2026-02-08 03:53:20,821 | INFO     | [job] queue monitor thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:24,464 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 04:54:24] 2026-02-08 03:53:48,751 | INFO     | PID=1566793 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 04:54:24] 2026-02-08 03:53:48,751 | INFO     | .. there are 6 such processes running
[2026-02-08 04:54:24] 2026-02-08 03:53:48,753 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 04:54:24] 2026-02-08 03:53:48,753 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 04:54:24] 2026-02-08 03:53:48,753 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 04:54:24] 2026-02-08 03:54:14,383 | INFO     | [monitor] cgroup control has ended
[2026-02-08 04:54:24] 2026-02-08 03:54:15,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23389857216320)>', '<ExcThread(monitor, started 23389617268480)>']
[2026-02-08 04:54:24] 2026-02-08 03:54:15,871 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 04:54:24] 2026-02-08 03:54:15,871 | INFO     | [monitor] control thread has ended
[2026-02-08 04:54:24] 2026-02-08 03:54:20,299 | INFO     | all workflow threads have been joined
[2026-02-08 04:54:24] 2026-02-08 03:54:20,300 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 04:54:24] 2026-02-08 03:54:20,300 | INFO     | traces error code: 0
[2026-02-08 04:54:24] 2026-02-08 03:54:20,300 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 04:54:24] 2026-02-08 03:54:20,448 [wrapper] ==== pilot stdout END ====
[2026-02-08 04:54:24] 2026-02-08 03:54:20,452 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 04:54:24] 2026-02-08 03:54:20,456 [wrapper] pilotpid: 1566793
[2026-02-08 04:54:24] 2026-02-08 03:54:20,459 [wrapper] Pilot exit status: 0
[2026-02-08 04:54:24] 2026-02-08 03:54:20,472 [wrapper] pandaids: 6995859879
[2026-02-08 04:54:24] 2026-02-08 03:54:20,647 [wrapper] cleanup supervisor_pilot 1742054 1566794
[2026-02-08 04:54:24] 2026-02-08 03:54:20,652 [wrapper] Test setup, not cleaning
[2026-02-08 04:54:24] 2026-02-08 03:54:20,656 [wrapper] apfmon messages muted
[2026-02-08 04:54:24] 2026-02-08 03:54:20,660 [wrapper] ==== wrapper stdout END ====
[2026-02-08 04:54:24] 2026-02-08 03:54:20,664 [wrapper] ==== wrapper stderr END ====
[2026-02-08 04:54:24]  *** Error codes and diagnostics ***
[2026-02-08 04:54:24]     "exeErrorCode": 0,
[2026-02-08 04:54:24]     "exeErrorDiag": "",
[2026-02-08 04:54:24]     "pilotErrorCode": 0,
[2026-02-08 04:54:24]     "pilotErrorDiag": "",
[2026-02-08 04:54:24]  *** Listing of results directory ***
[2026-02-08 04:54:24] total 726200
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc    584627 Feb  6 05:30 pilot3.tar.gz
[2026-02-08 04:54:24] -rwx------ 1 boinc boinc     36322 Feb  6 05:53 runpilot2-wrapper.sh
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc      5111 Feb  6 05:53 queuedata.json
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc       100 Feb  8 01:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 04:54:24] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 01:51 run_atlas
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc       105 Feb  8 01:51 job.xml
[2026-02-08 04:54:24] -rw-r--r-- 2 boinc boinc 533260395 Feb  8 01:51 EVNT.48318024._000065.pool.root.1
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc      6693 Feb  8 01:51 init_data.xml
[2026-02-08 04:54:24] -rw-r--r-- 2 boinc boinc     15845 Feb  8 01:51 start_atlas.sh
[2026-02-08 04:54:24] drwxrwx--x 2 boinc boinc      4096 Feb  8 01:51 shared
[2026-02-08 04:54:24] -rw-r--r-- 2 boinc boinc    597964 Feb  8 01:51 input.tar.gz
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc         0 Feb  8 01:51 boinc_lockfile
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc      2527 Feb  8 01:51 pandaJob.out
[2026-02-08 04:54:24] -rw------- 1 boinc boinc   1009502 Feb  8 01:51 agis_schedconf.cvmfs.json
[2026-02-08 04:54:24] -rw------- 1 boinc boinc       444 Feb  8 01:51 workernode_map.json
[2026-02-08 04:54:24] drwx------ 5 boinc boinc      4096 Feb  8 01:51 pilot3
[2026-02-08 04:54:24] -rw------- 1 boinc boinc 202619498 Feb  8 04:52 HITS.48318026._003101.pool.root.1
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc       529 Feb  8 04:52 boinc_task_state.xml
[2026-02-08 04:54:24] -rw------- 1 boinc boinc      1028 Feb  8 04:53 memory_monitor_summary.json
[2026-02-08 04:54:24] -rw------- 1 boinc boinc   1513088 Feb  8 04:53 agis_ddmendpoints.agis.ALL.json
[2026-02-08 04:54:24] -rw------- 1 boinc boinc    388833 Feb  8 04:53 log.48318026._003101.job.log.tgz.1
[2026-02-08 04:54:24] -rw------- 1 boinc boinc      6355 Feb  8 04:53 heartbeat.json
[2026-02-08 04:54:24] -rw------- 1 boinc boinc        95 Feb  8 04:53 pilot_heartbeat.json
[2026-02-08 04:54:24] -rw------- 1 boinc boinc      4831 Feb  8 04:54 pilotlog.txt
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc        26 Feb  8 04:54 wrapper_checkpoint.txt
[2026-02-08 04:54:24] -rw------- 1 boinc boinc   1514244 Feb  8 04:54 log.48318026._003101.job.log.1
[2026-02-08 04:54:24] -rw------- 1 boinc boinc       357 Feb  8 04:54 output.list
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc       620 Feb  8 04:54 runtime_log
[2026-02-08 04:54:24] -rw------- 1 boinc boinc   1925120 Feb  8 04:54 result.tar.gz
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc      9222 Feb  8 04:54 runtime_log.err
[2026-02-08 04:54:24] -rw------- 1 boinc boinc       665 Feb  8 04:54 87aNDmX1S88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmijXKDmDUhWsn.diag
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc      8192 Feb  8 04:54 boinc_mmap_file
[2026-02-08 04:54:24] -rw-r--r-- 1 boinc boinc     21232 Feb  8 04:54 stderr.txt
[2026-02-08 04:54:24] HITS file was successfully produced:
[2026-02-08 04:54:24] -rw------- 1 boinc boinc 202619498 Feb  8 04:52 shared/HITS.pool.root.1
[2026-02-08 04:54:24]  *** Contents of shared directory: ***
[2026-02-08 04:54:24] total 721124
[2026-02-08 04:54:24] -rw-r--r-- 2 boinc boinc 533260395 Feb  8 01:51 ATLAS.root_0
[2026-02-08 04:54:24] -rw-r--r-- 2 boinc boinc     15845 Feb  8 01:51 start_atlas.sh
[2026-02-08 04:54:24] -rw-r--r-- 2 boinc boinc    597964 Feb  8 01:51 input.tar.gz
[2026-02-08 04:54:24] -rw------- 1 boinc boinc 202619498 Feb  8 04:52 HITS.pool.root.1
[2026-02-08 04:54:24] -rw------- 1 boinc boinc   1925120 Feb  8 04:54 result.tar.gz
04:54:25 (1562429): run_atlas exited; CPU time 43229.930821
04:54:25 (1562429): called boinc_finish(0)

</stderr_txt>
]]>

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