Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:51 (2878644): wrapper (7.7.26015): starting
00:01:51 (2878644): wrapper: running run_atlas (--nthreads 12)
[2026-02-06 00:01:51] Arguments: --nthreads 12
[2026-02-06 00:01:51] Threads: 12
[2026-02-06 00:01:51] Checking for CVMFS
[2026-02-06 00:01:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 00:01:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 00:01:54] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 00:01:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 00:01:55] 2.13.3.0 9473 133237 299004 155928 1 400 32098602 32935937 18556 16776704 0 637483096 99.741 432377536 33351 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-06 00:01:55] CVMFS is ok
[2026-02-06 00:01:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 00:01:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 00:01:55] Further information can be found at the LHC@home message board.
[2026-02-06 00:01:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 00:01:55] Checking for apptainer binary...
[2026-02-06 00:01:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 00:01:55] Running /usr/bin/apptainer --version
[2026-02-06 00:01:56] apptainer version 1.4.5-2.el9
[2026-02-06 00:01:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 00:01:57] c-4-11.aglt2.org
[2026-02-06 00:01:57] apptainer works
[2026-02-06 00:01:57] Set ATHENA_PROC_NUMBER=12
[2026-02-06 00:01:57] Set ATHENA_CORE_NUMBER=12
[2026-02-06 00:01:58] Starting ATLAS job with PandaID=7000892114
[2026-02-06 00:01:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 17:35:05]  *** The last 200 lines of the pilot log: ***
[2026-02-06 17:35:05] 2026-02-06 18:15:51,717 | INFO     | monitor loop #2079: job 0:7000892114 is in state 'finished'
[2026-02-06 17:35:05] 2026-02-06 18:15:51,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-06 17:35:05] 2026-02-06 18:15:54,187 | INFO     | job 7000892114 has state=finished
[2026-02-06 17:35:05] 2026-02-06 18:15:54,187 | INFO     | preparing for final server update for job 7000892114 in state='finished'
[2026-02-06 17:35:05] 2026-02-06 18:15:54,187 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-7000892114/jobReport.json
[2026-02-06 17:35:05] 2026-02-06 18:15:54,190 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-02-06 17:35:05] 2026-02-06 18:15:54,190 | INFO     | this job has now completed (state=finished)
[2026-02-06 17:35:05] 2026-02-06 18:15:54,190 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-06 17:35:05] 2026-02-06 18:15:54,249 | INFO     | log transfer has been attempted: DONE
[2026-02-06 17:35:05] 2026-02-06 18:15:54,249 | INFO     | job 7000892114 has finished - writing final server update
[2026-02-06 17:35:05] 2026-02-06 18:15:54,249 | INFO     | total number of processed events: 400 (read)
[2026-02-06 17:35:05] 2026-02-06 18:15:54,335 | INFO     | monitor loop #2080: job 0:7000892114 is in state 'finished'
[2026-02-06 17:35:05] 2026-02-06 18:15:54,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-06 17:35:05] 2026-02-06 18:15:54,386 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7000892114/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 17:35:05] 2026-02-06 18:15:54,387 | INFO     | extracted standard info from prmon json
[2026-02-06 17:35:05] 2026-02-06 18:15:54,387 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 17:35:05] 2026-02-06 18:15:54,387 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 17:35:05] 2026-02-06 18:15:54,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 17:35:05] 2026-02-06 18:15:54,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 17:35:05] 2026-02-06 18:15:54,666 | INFO     | fitting pss+swap vs Time
[2026-02-06 17:35:05] 2026-02-06 18:15:54,700 | INFO     | sum of square deviations: 144334481211.6601
[2026-02-06 17:35:05] 2026-02-06 18:15:55,067 | INFO     | sum of deviations: 201208579280.3838
[2026-02-06 17:35:05] 2026-02-06 18:15:55,067 | INFO     | mean x: 1770378086.9251614
[2026-02-06 17:35:05] 2026-02-06 18:15:55,067 | INFO     | mean y: 2670819.334193548
[2026-02-06 17:35:05] 2026-02-06 18:15:55,067 | INFO     | intersect: -2465313661.3593817
[2026-02-06 17:35:05] 2026-02-06 18:15:55,068 | INFO     | chi2: 16.08708413979485
[2026-02-06 17:35:05] 2026-02-06 18:15:55,073 | INFO     | sum of square deviations: 141559265605.5078
[2026-02-06 17:35:05] 2026-02-06 18:15:55,332 | INFO     | sum of deviations: 466384889585.3158
[2026-02-06 17:35:05] 2026-02-06 18:15:55,346 | INFO     | mean x: 1770377934.4376624
[2026-02-06 17:35:05] 2026-02-06 18:15:55,346 | INFO     | mean y: 2685389.9753246754
[2026-02-06 17:35:05] 2026-02-06 18:15:55,346 | INFO     | intersect: -5830048440.235102
[2026-02-06 17:35:05] 2026-02-06 18:15:55,347 | INFO     | chi2: 12.309611941042249
[2026-02-06 17:35:05] 2026-02-06 18:15:55,347 | INFO     | current chi2=12.309611941042249 (change=23.481397659929026 %)
[2026-02-06 17:35:05] 2026-02-06 18:15:55,348 | INFO     | right removable region: 769
[2026-02-06 17:35:05] 2026-02-06 18:15:55,349 | INFO     | sum of square deviations: 141558355485.50763
[2026-02-06 17:35:05] 2026-02-06 18:15:55,711 | INFO     | sum of deviations: -80227601320.66699
[2026-02-06 17:35:05] 2026-02-06 18:15:55,711 | INFO     | mean x: 1770378239.4376624
[2026-02-06 17:35:05] 2026-02-06 18:15:55,712 | INFO     | mean y: 2686275.34025974
[2026-02-06 17:35:05] 2026-02-06 18:15:55,712 | INFO     | intersect: 1006040680.6189371
[2026-02-06 17:35:05] 2026-02-06 18:15:55,713 | INFO     | chi2: 12.097958306443262
[2026-02-06 17:35:05] 2026-02-06 18:15:55,713 | INFO     | current chi2=12.097958306443262 (change=24.797071978281203 %)
[2026-02-06 17:35:05] 2026-02-06 18:15:55,751 | INFO     | left removable region: 10
[2026-02-06 17:35:05] 2026-02-06 18:15:55,752 | INFO     | sum of square deviations: 135577711063.10936
[2026-02-06 17:35:05] 2026-02-06 18:15:55,987 | INFO     | sum of deviations: 76024699661.39786
[2026-02-06 17:35:05] 2026-02-06 18:15:55,988 | INFO     | mean x: 1770378208.9657445
[2026-02-06 17:35:05] 2026-02-06 18:15:55,988 | INFO     | mean y: 2713183.092226614
[2026-02-06 17:35:05] 2026-02-06 18:15:55,988 | INFO     | intersect: -990019844.8392853
[2026-02-06 17:35:05] 2026-02-06 18:15:55,989 | INFO     | chi2: 6.144793714075514
[2026-02-06 17:35:05] 2026-02-06 18:15:55,989 | INFO     | current memory leak: 0.56 B/s (using 759 data points, chi2=6.14)
[2026-02-06 17:35:05] 2026-02-06 18:15:56,055 | INFO     | could have reported an average CPU frequency of 2599 MHz (30 samples)
[2026-02-06 17:35:05] 2026-02-06 18:15:56,056 | INFO     | ..............................
[2026-02-06 17:35:05] 2026-02-06 18:15:56,056 | INFO     | . Timing measurements:
[2026-02-06 17:35:05] 2026-02-06 18:15:56,056 | INFO     | . get job = 0 s
[2026-02-06 17:35:05] 2026-02-06 18:15:56,056 | INFO     | . initial setup = 75 s
[2026-02-06 17:35:05] 2026-02-06 18:15:56,056 | INFO     | . payload setup = 89 s
[2026-02-06 17:35:05] 2026-02-06 18:15:56,056 | INFO     | . stage-in = 1 s
[2026-02-06 17:35:05] 2026-02-06 18:15:56,056 | INFO     | . payload execution = 47291 s
[2026-02-06 17:35:05] 2026-02-06 18:15:56,056 | INFO     | . stage-out = 19 s
[2026-02-06 17:35:05] 2026-02-06 18:15:56,057 | INFO     | . log creation = 6 s
[2026-02-06 17:35:05] 2026-02-06 18:15:56,057 | INFO     | ..............................
[2026-02-06 17:35:05] 2026-02-06 18:15:57,390 | INFO     | PID=2887404 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 17:35:05] 2026-02-06 18:15:57,390 | INFO     | .. there are 42 such processes running
[2026-02-06 17:35:05] 2026-02-06 18:15:58,319 | INFO     | 
[2026-02-06 17:35:05] 2026-02-06 18:15:58,319 | INFO     | job summary report
[2026-02-06 17:35:05] 2026-02-06 18:15:58,319 | INFO     | --------------------------------------------------
[2026-02-06 17:35:05] 2026-02-06 18:15:58,319 | INFO     | PanDA job id: 7000892114
[2026-02-06 17:35:05] 2026-02-06 18:15:58,319 | INFO     | task id: 48431080
[2026-02-06 17:35:05] 2026-02-06 18:15:58,319 | INFO     | errors: (none)
[2026-02-06 17:35:05] 2026-02-06 18:15:58,319 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 17:35:05] 2026-02-06 18:15:58,320 | INFO     | pilot state: finished 
[2026-02-06 17:35:05] 2026-02-06 18:15:58,320 | INFO     | transexitcode: 0
[2026-02-06 17:35:05] 2026-02-06 18:15:58,320 | INFO     | exeerrorcode: 0
[2026-02-06 17:35:05] 2026-02-06 18:15:58,320 | INFO     | exeerrordiag: 
[2026-02-06 17:35:05] 2026-02-06 18:15:58,320 | INFO     | exitcode: 0
[2026-02-06 17:35:05] 2026-02-06 18:15:58,320 | INFO     | exitmsg: OK
[2026-02-06 17:35:05] 2026-02-06 18:15:58,414 | INFO     | cpuconsumptiontime: 66742 s
[2026-02-06 17:35:05] 2026-02-06 18:15:58,414 | INFO     | nevents: 400
[2026-02-06 17:35:05] 2026-02-06 18:15:58,414 | INFO     | neventsw: 0
[2026-02-06 17:35:05] 2026-02-06 18:15:58,414 | INFO     | pid: 2902324
[2026-02-06 17:35:05] 2026-02-06 18:15:58,414 | INFO     | pgrp: 2902324
[2026-02-06 17:35:05] 2026-02-06 18:15:58,415 | INFO     | corecount: 12
[2026-02-06 17:35:05] 2026-02-06 18:15:58,415 | INFO     | event service: False
[2026-02-06 17:35:05] 2026-02-06 18:15:58,415 | INFO     | sizes: {0: 2282044, 1: 2282729, 2: 2282757, 3: 2282757, 4: 2282757, 5: 2283374, 17: 2283374, 47388: 2327937, 47390: 2327936, 47412: 2336990, 47417: 2337046, 47422:
[2026-02-06 17:35:05] 2026-02-06 18:15:58,415 | INFO     | --------------------------------------------------
[2026-02-06 17:35:05] 2026-02-06 18:15:58,415 | INFO     | 
[2026-02-06 17:35:05] 2026-02-06 18:15:58,415 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-02-06 17:35:05] 2026-02-06 18:15:58,553 | INFO     | time since job start (47440s) is within the limit (349056.0s)
[2026-02-06 17:35:05] 2026-02-06 18:15:58,645 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,645 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,645 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,645 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,646 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,646 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,646 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,646 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,648 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,649 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 17:35:05] 2026-02-06 18:15:58,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,652 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 17:35:05] 2026-02-06 18:15:58,653 | INFO     | job 7000892114 has completed (purged errors)
[2026-02-06 17:35:05] 2026-02-06 18:15:58,653 | INFO     | overall cleanup function is called
[2026-02-06 17:35:05] 2026-02-06 18:15:59,676 | INFO     | --- collectZombieJob: --- 10, [2902324]
[2026-02-06 17:35:05] 2026-02-06 18:15:59,676 | INFO     | zombie collector waiting for pid 2902324
[2026-02-06 17:35:05] 2026-02-06 18:15:59,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 17:35:05] 2026-02-06 18:15:59,676 | INFO     | collected zombie processes
[2026-02-06 17:35:05] 2026-02-06 18:15:59,676 | INFO     | will attempt to kill all subprocesses of pid=2902324
[2026-02-06 17:35:05] 2026-02-06 18:16:06,743 | INFO     | process IDs to be killed: [2902324] (in reverse order)
[2026-02-06 17:35:05] 2026-02-06 18:16:08,560 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 17:35:05] 2026-02-06 18:16:08,562 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 17:35:05] 2026-02-06 18:16:08,585 | INFO     | did not find any defunct processes belonging to 2902324
[2026-02-06 17:35:05] 2026-02-06 18:16:08,614 | INFO     | did not find any defunct processes belonging to 2902324
[2026-02-06 17:35:05] 2026-02-06 18:16:08,615 | INFO     | ready for new job
[2026-02-06 17:35:05] 2026-02-06 18:16:08,615 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 17:35:05] 2026-02-06 18:16:08,619 | INFO     | **************************************
[2026-02-06 17:35:05] 2026-02-06 18:16:08,619 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 17:35:05] 2026-02-06 18:16:08,619 | INFO     | **************************************
[2026-02-06 17:35:05] 2026-02-06 18:16:08,619 | INFO     | 
[2026-02-06 17:35:05] 2026-02-06 18:16:08,625 | INFO     | architecture information:
[2026-02-06 17:35:05] 2026-02-06 18:16:08,628 | INFO     | executing command: cat /etc/os-release
[2026-02-06 17:35:05] 2026-02-06 18:16:08,759 | INFO     | cat /etc/os-release:
[2026-02-06 17:35:05] NAME="CentOS Linux"
[2026-02-06 17:35:05] VERSION="7 (Core)"
[2026-02-06 17:35:05] ID="centos"
[2026-02-06 17:35:05] ID_LIKE="rhel fedora"
[2026-02-06 17:35:05] VERSION_ID="7"
[2026-02-06 17:35:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 17:35:05] ANSI_COLOR="0;31"
[2026-02-06 17:35:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 17:35:05] HOME_URL="https://www.centos.org/"
[2026-02-06 17:35:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 17:35:05] 
[2026-02-06 17:35:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 17:35:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 17:35:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 17:35:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 17:35:05] 
[2026-02-06 17:35:05] 2026-02-06 18:16:08,759 | INFO     | **************************************
[2026-02-06 17:35:05] 2026-02-06 18:16:09,278 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-06 17:35:05] 2026-02-06 18:16:09,458 | INFO     | sufficient remaining disk space (71823261696 B)
[2026-02-06 17:35:05] 2026-02-06 18:16:09,458 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 17:35:05] 2026-02-06 18:16:09,459 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 17:35:05] 2026-02-06 18:16:09,459 | INFO     | update_server=False
[2026-02-06 17:35:05] 2026-02-06 18:16:09,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 17:35:05] 2026-02-06 18:16:09,500 | INFO     | all payload control threads have been joined
[2026-02-06 17:35:05] 2026-02-06 18:16:09,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 17:35:05] 2026-02-06 18:16:09,924 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-06 17:35:05] 2026-02-06 18:16:09,924 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-06 17:35:05] 2026-02-06 18:16:09,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 17:35:05] 2026-02-06 18:16:09,924 | INFO     | will abort loop
[2026-02-06 17:35:05] 2026-02-06 18:16:10,078 | INFO     | all data control threads have been joined
[2026-02-06 17:35:05] 2026-02-06 18:16:10,480 | INFO     | [job] retrieve thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:10,506 | INFO     | [payload] control thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:10,722 | INFO     | all job control threads have been joined
[2026-02-06 17:35:05] 2026-02-06 18:16:10,930 | INFO     | [job] job monitor thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,092 | INFO     | [data] control thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,611 | INFO     | [payload] failed_post thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,611 | INFO     | [payload] validate_post thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 17:35:05] 2026-02-06 18:16:11,698 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,704 | INFO     | [data] copytool_in thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,718 | INFO     | [job] validate thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,718 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,719 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,777 | INFO     | [job] control thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,900 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:11,909 | INFO     | [data] copytool_out thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:12,636 | INFO     | [job] queue monitor thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:12,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 17:35:05] 2026-02-06 18:16:17,026 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 17:35:05] 2026-02-06 18:16:35,646 | INFO     | PID=2887404 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 17:35:05] 2026-02-06 18:16:35,646 | INFO     | .. there are 42 such processes running
[2026-02-06 17:35:05] 2026-02-06 18:16:35,647 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 17:35:05] 2026-02-06 18:16:35,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 17:35:05] 2026-02-06 18:16:35,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 17:35:05] 2026-02-06 18:17:00,377 | INFO     | [monitor] cgroup control has ended
[2026-02-06 17:35:05] 2026-02-06 18:17:00,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436121188160)>', '<ExcThread(monitor, started 140435490072320)>']
[2026-02-06 17:35:05] 2026-02-06 18:17:01,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 17:35:05] 2026-02-06 18:17:01,146 | INFO     | [monitor] control thread has ended
[2026-02-06 17:35:05] 2026-02-06 18:17:05,928 | INFO     | all workflow threads have been joined
[2026-02-06 17:35:05] 2026-02-06 18:17:05,928 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 17:35:05] 2026-02-06 18:17:05,928 | INFO     | traces error code: 0
[2026-02-06 17:35:05] 2026-02-06 18:17:05,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 17:35:05] 2026-02-06 18:17:11,085 [wrapper] ==== pilot stdout END ====
[2026-02-06 17:35:05] 2026-02-06 18:17:11,170 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 17:35:05] 2026-02-06 18:17:11,207 [wrapper] pilotpid: 2887404
[2026-02-06 17:35:05] 2026-02-06 18:17:11,289 [wrapper] Pilot exit status: 0
[2026-02-06 17:35:05] 2026-02-06 18:17:11,515 [wrapper] pandaids: 7000892114
[2026-02-06 17:35:05] 2026-02-06 18:17:12,939 [wrapper] cleanup supervisor_pilot 1164483 2887405
[2026-02-06 17:35:05] 2026-02-06 18:17:13,008 [wrapper] Test setup, not cleaning
[2026-02-06 17:35:05] 2026-02-06 18:17:13,059 [wrapper] apfmon messages muted
[2026-02-06 17:35:05] 2026-02-06 18:17:13,086 [wrapper] ==== wrapper stdout END ====
[2026-02-06 17:35:05] 2026-02-06 18:17:13,135 [wrapper] ==== wrapper stderr END ====
[2026-02-06 17:35:05]  *** Error codes and diagnostics ***
[2026-02-06 17:35:05]     "exeErrorCode": 0,
[2026-02-06 17:35:05]     "exeErrorDiag": "",
[2026-02-06 17:35:05]     "pilotErrorCode": 0,
[2026-02-06 17:35:05]     "pilotErrorDiag": "",
[2026-02-06 17:35:05]  *** Listing of results directory ***
[2026-02-06 17:35:05] total 891196
[2026-02-06 17:35:05] -rwx------. 1 boincer umatlas     36322 Feb  5 23:07 runpilot2-wrapper.sh
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas      5111 Feb  5 23:07 queuedata.json
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas    584627 Feb  5 23:07 pilot3.tar.gz
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas       100 Feb  6 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 17:35:05] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  6 00:01 run_atlas
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas       105 Feb  6 00:01 job.xml
[2026-02-06 17:35:05] -rw-r--r--. 2 boincer umatlas 645376966 Feb  6 00:01 EVNT.48431078._000220.pool.root.1
[2026-02-06 17:35:05] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 00:01 start_atlas.sh
[2026-02-06 17:35:05] drwxrwx--x. 2 boincer umatlas      4096 Feb  6 00:01 shared
[2026-02-06 17:35:05] -rw-r--r--. 2 boincer umatlas    597951 Feb  6 00:01 input.tar.gz
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas         0 Feb  6 00:01 boinc_lockfile
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas      2559 Feb  6 00:01 pandaJob.out
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas        57 Feb  6 00:02 setup.sh.local
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas       440 Feb  6 00:05 workernode_map.json
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas   1007461 Feb  6 00:05 agis_schedconf.cvmfs.json
[2026-02-06 17:35:05] drwx------. 5 boincer umatlas      4096 Feb  6 00:05 pilot3
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas 251898322 Feb  6 13:02 HITS.48431080._011475.pool.root.1
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas       532 Feb  6 13:02 boinc_task_state.xml
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas      1051 Feb  6 13:15 memory_monitor_summary.json
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas   1513088 Feb  6 13:15 agis_ddmendpoints.agis.ALL.json
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas    860154 Feb  6 13:15 log.48431080._011475.job.log.tgz.1
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas      6413 Feb  6 13:15 heartbeat.json
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas        95 Feb  6 13:15 pilot_heartbeat.json
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas      5006 Feb  6 13:17 pilotlog.txt
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas   4824036 Feb  6 13:17 log.48431080._011475.job.log.1
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas       357 Feb  6 13:17 output.list
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas       620 Feb  6 13:17 runtime_log
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas   5703680 Feb  6 13:17 result.tar.gz
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas      9334 Feb  6 13:17 runtime_log.err
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas       660 Feb  6 13:17 EMzNDmxIS88n9Rq4apOajLDm4fhM0noT9bVooX4SDmgjWKDm9kWbZm.diag
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas      6659 Feb  6 17:31 init_data.xml
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas      8192 Feb  6 17:35 boinc_mmap_file
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas        28 Feb  6 17:35 wrapper_checkpoint.txt
[2026-02-06 17:35:05] -rw-r--r--. 1 boincer umatlas     21675 Feb  6 17:35 stderr.txt
[2026-02-06 17:35:05] HITS file was successfully produced:
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas 251898322 Feb  6 13:02 shared/HITS.pool.root.1
[2026-02-06 17:35:05]  *** Contents of shared directory: ***
[2026-02-06 17:35:05] total 882428
[2026-02-06 17:35:05] -rw-r--r--. 2 boincer umatlas 645376966 Feb  6 00:01 ATLAS.root_0
[2026-02-06 17:35:05] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 00:01 start_atlas.sh
[2026-02-06 17:35:05] -rw-r--r--. 2 boincer umatlas    597951 Feb  6 00:01 input.tar.gz
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas 251898322 Feb  6 13:02 HITS.pool.root.1
[2026-02-06 17:35:05] -rw-------. 1 boincer umatlas   5703680 Feb  6 13:17 result.tar.gz
17:35:07 (2878644): run_atlas exited; CPU time 68554.872374
17:35:07 (2878644): called boinc_finish(0)

</stderr_txt>
]]>

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