Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:59:00 (3875353): wrapper (7.7.26015): starting
04:59:00 (3875353): wrapper: running run_atlas (--nthreads 8)
[2026-02-05 04:59:00] Arguments: --nthreads 8
[2026-02-05 04:59:00] Threads: 8
[2026-02-05 04:59:00] Checking for CVMFS
[2026-02-05 04:59:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-05 04:59:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-05 04:59:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-05 04:59:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-05 04:59:01] 2.10.1.0 4440 353962 173728 155899 0 1 14675174 18432001 1 130560 2 368537980 99.988 13950443 7295 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2026-02-05 04:59:01] CVMFS is ok
[2026-02-05 04:59:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-05 04:59:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-05 04:59:01] Further information can be found at the LHC@home message board.
[2026-02-05 04:59:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-05 04:59:01] Checking for apptainer binary...
[2026-02-05 04:59:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-05 04:59:01] Running /usr/bin/apptainer --version
[2026-02-05 04:59:01] apptainer version 1.1.9-1.el8
[2026-02-05 04:59:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-05 04:59:01] c-16-31.aglt2.org
[2026-02-05 04:59:01] apptainer works
[2026-02-05 04:59:01] Set ATHENA_PROC_NUMBER=8
[2026-02-05 04:59:01] Set ATHENA_CORE_NUMBER=8
[2026-02-05 04:59:01] Starting ATLAS job with PandaID=6990629291
[2026-02-05 04:59:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 06:39:48]  *** The last 200 lines of the pilot log: ***
[2026-02-05 06:39:48]  is_tar=False
[2026-02-05 06:39:48]  lfn=log.48317892._000830.job.log.tgz.1
[2026-02-05 06:39:48]  mtime=0
[2026-02-05 06:39:48]  protocol_id=None
[2026-02-05 06:39:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-05 06:39:48]  replicas=None
[2026-02-05 06:39:48]  scope=mc23_13p6TeV
[2026-02-05 06:39:48]  status=None
[2026-02-05 06:39:48]  status_code=0
[2026-02-05 06:39:48]  storage_token=
[2026-02-05 06:39:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6990629291/log.48317892._000830.job.log.tgz.1
[2026-02-05 06:39:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5d/cc/log.48317892._000830.job.log.tgz.1
[2026-02-05 06:39:48]  workdir=None
[2026-02-05 06:39:48] ]
[2026-02-05 06:39:48] 2026-02-05 11:39:09,784 | INFO     | transferring file log.48317892._000830.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6990629291/log.48317892._000830.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-05 06:39:48] 2026-02-05 11:39:09,784 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6990629291/log.48317892._000830.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317892._000830.job
[2026-02-05 06:39:48] 2026-02-05 11:39:09,797 | INFO     | adding to output.list: log.48317892._000830.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5d/cc/log.48317892._000830.job.log.tg
[2026-02-05 06:39:48] 2026-02-05 11:39:09,798 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-05 06:39:48] 2026-02-05 11:39:09,798 | INFO     | summary of transferred files:
[2026-02-05 06:39:48] 2026-02-05 11:39:09,798 | INFO     |  -- lfn=log.48317892._000830.job.log.tgz.1, status_code=0, status=transferred
[2026-02-05 06:39:48] 2026-02-05 11:39:09,798 | INFO     | stage-out finished correctly
[2026-02-05 06:39:48] 2026-02-05 11:39:10,175 | INFO     | time since job start (5993s) is within the limit (349056.0s)
[2026-02-05 06:39:48] 2026-02-05 11:39:11,085 | WARNING  | process 3883823 can no longer be monitored (due to stat problems) - aborting
[2026-02-05 06:39:48] 2026-02-05 11:39:11,085 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6990629291/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 06:39:48] 2026-02-05 11:39:11,303 | INFO     | number of running child processes to parent process 3883823: 1
[2026-02-05 06:39:48] 2026-02-05 11:39:11,304 | INFO     | maximum number of monitored processes: 6
[2026-02-05 06:39:48] 2026-02-05 11:39:11,453 | INFO     | PID=3879433 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-05 06:39:48] 2026-02-05 11:39:12,352 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-05 06:39:48] 2026-02-05 11:39:12,453 | INFO     | time since job start (5995s) is within the limit (349056.0s)
[2026-02-05 06:39:48] 2026-02-05 11:39:13,807 | INFO     | monitor loop #453: job 0:6990629291 is in state 'finished'
[2026-02-05 06:39:48] 2026-02-05 11:39:13,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-05 06:39:48] 2026-02-05 11:39:14,459 | INFO     | time since job start (5997s) is within the limit (349056.0s)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,174 | INFO     | job 6990629291 has state=finished
[2026-02-05 06:39:48] 2026-02-05 11:39:15,174 | INFO     | preparing for final server update for job 6990629291 in state='finished'
[2026-02-05 06:39:48] 2026-02-05 11:39:15,174 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6990629291/jobReport.json
[2026-02-05 06:39:48] 2026-02-05 11:39:15,177 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-05 06:39:48] 2026-02-05 11:39:15,177 | INFO     | this job has now completed (state=finished)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,177 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,177 | INFO     | log transfer has been attempted: DONE
[2026-02-05 06:39:48] 2026-02-05 11:39:15,178 | INFO     | job 6990629291 has finished - writing final server update
[2026-02-05 06:39:48] 2026-02-05 11:39:15,178 | INFO     | total number of processed events: 400 (read)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,207 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6990629291/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,208 | INFO     | extracted standard info from prmon json
[2026-02-05 06:39:48] 2026-02-05 11:39:15,208 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 06:39:48] 2026-02-05 11:39:15,208 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 06:39:48] 2026-02-05 11:39:15,208 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 06:39:48] 2026-02-05 11:39:15,208 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 06:39:48] 2026-02-05 11:39:15,210 | INFO     | fitting pss+swap vs Time
[2026-02-05 06:39:48] 2026-02-05 11:39:15,210 | INFO     | sum of square deviations: 233641590.0
[2026-02-05 06:39:48] 2026-02-05 11:39:15,210 | INFO     | sum of deviations: -9045314484.000002
[2026-02-05 06:39:48] 2026-02-05 11:39:15,211 | INFO     | mean x: 1770288626.0
[2026-02-05 06:39:48] 2026-02-05 11:39:15,211 | INFO     | mean y: 2623131.681318681
[2026-02-05 06:39:48] 2026-02-05 11:39:15,211 | INFO     | intersect: 68538440533.10486
[2026-02-05 06:39:48] 2026-02-05 11:39:15,211 | INFO     | chi2: 0.12576990839464544
[2026-02-05 06:39:48] 2026-02-05 11:39:15,211 | INFO     | current memory leak: -38.71 B/s (using 91 data points, chi2=0.13)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,211 | INFO     | could have reported an average CPU frequency of 3285 MHz (7 samples)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,211 | INFO     | ..............................
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | . Timing measurements:
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | . get job = 0 s
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | . initial setup = 5 s
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | . payload setup = 4 s
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | . stage-in = 0 s
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | . payload execution = 5972 s
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | . stage-out = 0 s
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | . log creation = 0 s
[2026-02-05 06:39:48] 2026-02-05 11:39:15,212 | INFO     | ..............................
[2026-02-05 06:39:48] 2026-02-05 11:39:15,476 | INFO     | 
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | job summary report
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | --------------------------------------------------
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | PanDA job id: 6990629291
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | task id: 48317892
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | errors: (none)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | pilot state: finished 
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | transexitcode: 0
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | exeerrorcode: 0
[2026-02-05 06:39:48] 2026-02-05 11:39:15,477 | INFO     | exeerrordiag: 
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | exitcode: 0
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | exitmsg: OK
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | cpuconsumptiontime: 43956 s
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | nevents: 400
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | neventsw: 0
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | pid: 3883823
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | pgrp: 3883823
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | corecount: 8
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | event service: False
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | sizes: {0: 2283031, 11: 2283031, 5980: 2309734, 5981: 2309733, 5982: 2318787, 5984: 2318843, 5987: 2319165}
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | --------------------------------------------------
[2026-02-05 06:39:48] 2026-02-05 11:39:15,478 | INFO     | 
[2026-02-05 06:39:48] 2026-02-05 11:39:15,479 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-05 06:39:48] 2026-02-05 11:39:15,495 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,496 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,496 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,496 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,496 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,496 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,496 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,496 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,497 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,498 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,498 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 06:39:48] 2026-02-05 11:39:15,498 | INFO     | job 6990629291 has completed (purged errors)
[2026-02-05 06:39:48] 2026-02-05 11:39:15,498 | INFO     | overall cleanup function is called
[2026-02-05 06:39:48] 2026-02-05 11:39:16,506 | INFO     | --- collectZombieJob: --- 10, [3883823]
[2026-02-05 06:39:48] 2026-02-05 11:39:16,506 | INFO     | zombie collector waiting for pid 3883823
[2026-02-05 06:39:48] 2026-02-05 11:39:16,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 06:39:48] 2026-02-05 11:39:16,506 | INFO     | collected zombie processes
[2026-02-05 06:39:48] 2026-02-05 11:39:16,506 | INFO     | will attempt to kill all subprocesses of pid=3883823
[2026-02-05 06:39:48] 2026-02-05 11:39:16,670 | INFO     | process IDs to be killed: [3883823] (in reverse order)
[2026-02-05 06:39:48] 2026-02-05 11:39:16,732 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 06:39:48] 2026-02-05 11:39:16,732 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 06:39:48] 2026-02-05 11:39:16,742 | INFO     | did not find any defunct processes belonging to 3883823
[2026-02-05 06:39:48] 2026-02-05 11:39:16,749 | INFO     | did not find any defunct processes belonging to 3883823
[2026-02-05 06:39:48] 2026-02-05 11:39:16,749 | INFO     | ready for new job
[2026-02-05 06:39:48] 2026-02-05 11:39:16,749 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 06:39:48] 2026-02-05 11:39:16,751 | INFO     | **************************************
[2026-02-05 06:39:48] 2026-02-05 11:39:16,751 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 06:39:48] 2026-02-05 11:39:16,751 | INFO     | **************************************
[2026-02-05 06:39:48] 2026-02-05 11:39:16,751 | INFO     | 
[2026-02-05 06:39:48] 2026-02-05 11:39:16,764 | INFO     | architecture information:
[2026-02-05 06:39:48] 2026-02-05 11:39:16,764 | INFO     | executing command: cat /etc/os-release
[2026-02-05 06:39:48] 2026-02-05 11:39:16,775 | INFO     | cat /etc/os-release:
[2026-02-05 06:39:48] NAME="CentOS Linux"
[2026-02-05 06:39:48] VERSION="7 (Core)"
[2026-02-05 06:39:48] ID="centos"
[2026-02-05 06:39:48] ID_LIKE="rhel fedora"
[2026-02-05 06:39:48] VERSION_ID="7"
[2026-02-05 06:39:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 06:39:48] ANSI_COLOR="0;31"
[2026-02-05 06:39:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 06:39:48] HOME_URL="https://www.centos.org/"
[2026-02-05 06:39:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 06:39:48] 
[2026-02-05 06:39:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 06:39:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 06:39:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 06:39:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 06:39:48] 
[2026-02-05 06:39:48] 2026-02-05 11:39:16,776 | INFO     | **************************************
[2026-02-05 06:39:48] 2026-02-05 11:39:17,278 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-05 06:39:48] 2026-02-05 11:39:17,288 | INFO     | sufficient remaining disk space (104943583232 B)
[2026-02-05 06:39:48] 2026-02-05 11:39:17,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 06:39:48] 2026-02-05 11:39:17,288 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 06:39:48] 2026-02-05 11:39:17,288 | INFO     | update_server=False
[2026-02-05 06:39:48] 2026-02-05 11:39:17,289 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 06:39:48] 2026-02-05 11:39:17,315 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 06:39:48] 2026-02-05 11:39:17,315 | INFO     | aborting loop
[2026-02-05 06:39:48] 2026-02-05 11:39:17,341 | INFO     | all payload control threads have been joined
[2026-02-05 06:39:48] 2026-02-05 11:39:17,876 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 06:39:48] 2026-02-05 11:39:17,938 | INFO     | all data control threads have been joined
[2026-02-05 06:39:48] 2026-02-05 11:39:18,293 | INFO     | [job] retrieve thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:18,320 | INFO     | [job] job monitor thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:18,345 | INFO     | [payload] control thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:18,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 06:39:48] 2026-02-05 11:39:18,671 | INFO     | all job control threads have been joined
[2026-02-05 06:39:48] 2026-02-05 11:39:18,751 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:18,943 | INFO     | [data] control thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,252 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,289 | INFO     | [job] validate thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,352 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,359 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,463 | INFO     | [payload] failed_post thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,677 | INFO     | [job] control thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,714 | INFO     | [data] copytool_in thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,855 | INFO     | [payload] validate_post thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:19,881 | INFO     | [data] copytool_out thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:20,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 06:39:48] 2026-02-05 11:39:21,294 | INFO     | [job] queue monitor thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:22,424 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 06:39:48] 2026-02-05 11:39:23,432 | INFO     | [monitor] cgroup control has ended
[2026-02-05 06:39:48] 2026-02-05 11:39:23,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139681608480576)>', '<ExcThread(monitor, started 139681161262848)>']
[2026-02-05 06:39:48] 2026-02-05 11:39:28,816 | INFO     | all workflow threads have been joined
[2026-02-05 06:39:48] 2026-02-05 11:39:28,816 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 06:39:48] 2026-02-05 11:39:28,816 | INFO     | traces error code: 0
[2026-02-05 06:39:48] 2026-02-05 11:39:28,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 06:39:48] 2026-02-05 11:39:47,749 | INFO     | PID=3879433 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-05 06:39:48] 2026-02-05 11:39:47,750 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 06:39:48] 2026-02-05 11:39:47,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 06:39:48] 2026-02-05 11:39:47,750 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 06:39:48] 2026-02-05 11:39:47,750 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 06:39:48] 2026-02-05 11:39:47,750 | INFO     | [monitor] control thread has ended
[2026-02-05 06:39:48] 2026-02-05 11:39:47,820 [wrapper] ==== pilot stdout END ====
[2026-02-05 06:39:48] 2026-02-05 11:39:47,822 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 06:39:48] 2026-02-05 11:39:47,825 [wrapper] pilotpid: 3879433
[2026-02-05 06:39:48] 2026-02-05 11:39:47,827 [wrapper] Pilot exit status: 0
[2026-02-05 06:39:48] 2026-02-05 11:39:47,835 [wrapper] pandaids: 6990629291
[2026-02-05 06:39:48] 2026-02-05 11:39:47,881 [wrapper] cleanup supervisor_pilot 1845438 3879434
[2026-02-05 06:39:48] 2026-02-05 11:39:47,883 [wrapper] Test setup, not cleaning
[2026-02-05 06:39:48] 2026-02-05 11:39:47,885 [wrapper] apfmon messages muted
[2026-02-05 06:39:48] 2026-02-05 11:39:47,887 [wrapper] ==== wrapper stdout END ====
[2026-02-05 06:39:48] 2026-02-05 11:39:47,889 [wrapper] ==== wrapper stderr END ====
[2026-02-05 06:39:48]  *** Error codes and diagnostics ***
[2026-02-05 06:39:48]     "exeErrorCode": 0,
[2026-02-05 06:39:48]     "exeErrorDiag": "",
[2026-02-05 06:39:48]     "pilotErrorCode": 0,
[2026-02-05 06:39:48]     "pilotErrorDiag": "",
[2026-02-05 06:39:48]  *** Listing of results directory ***
[2026-02-05 06:39:48] total 681432
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas    584422 Jan 29 00:07 pilot3.tar.gz
[2026-02-05 06:39:48] -rwx------ 1 boincer umatlas     36322 Jan 29 00:09 runpilot2-wrapper.sh
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas      5111 Jan 29 00:11 queuedata.json
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas       100 Feb  5 04:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 06:39:48] -rwxr-xr-x 1 boincer umatlas      7986 Feb  5 04:58 run_atlas
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas       105 Feb  5 04:58 job.xml
[2026-02-05 06:39:48] -rw-r--r-- 2 boincer umatlas 502201650 Feb  5 04:59 EVNT.48317889._000016.pool.root.1
[2026-02-05 06:39:48] -rw-r--r-- 2 boincer umatlas     15845 Feb  5 04:59 start_atlas.sh
[2026-02-05 06:39:48] drwxrwx--x 2 boincer umatlas      4096 Feb  5 04:59 shared
[2026-02-05 06:39:48] -rw-r--r-- 2 boincer umatlas    597755 Feb  5 04:59 input.tar.gz
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas         0 Feb  5 04:59 boinc_lockfile
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas      2518 Feb  5 04:59 pandaJob.out
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas        57 Feb  5 04:59 setup.sh.local
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas   1009520 Feb  5 04:59 agis_schedconf.cvmfs.json
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas   1513144 Feb  5 04:59 agis_ddmendpoints.agis.ALL.json
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas       441 Feb  5 04:59 workernode_map.json
[2026-02-05 06:39:48] drwx------ 5 boincer umatlas      4096 Feb  5 04:59 pilot3
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas      6013 Feb  5 06:38 init_data.xml
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas 189165075 Feb  5 06:38 HITS.48317892._000830.pool.root.1
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas       530 Feb  5 06:39 boinc_task_state.xml
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas      1046 Feb  5 06:39 memory_monitor_summary.json
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas    385406 Feb  5 06:39 log.48317892._000830.job.log.tgz.1
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas      6385 Feb  5 06:39 heartbeat.json
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas        27 Feb  5 06:39 wrapper_checkpoint.txt
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas      8192 Feb  5 06:39 boinc_mmap_file
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas        95 Feb  5 06:39 pilot_heartbeat.json
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas       747 Feb  5 06:39 pilotlog.txt
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas    855510 Feb  5 06:39 log.48317892._000830.job.log.1
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas       357 Feb  5 06:39 output.list
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas       620 Feb  5 06:39 runtime_log
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas   1259520 Feb  5 06:39 result.tar.gz
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas       655 Feb  5 06:39 VoVNDm8SZ58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmuyHKDmLb3YUo.diag
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas      9336 Feb  5 06:39 runtime_log.err
[2026-02-05 06:39:48] -rw-r--r-- 1 boincer umatlas     21732 Feb  5 06:39 stderr.txt
[2026-02-05 06:39:48] HITS file was successfully produced:
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas 189165075 Feb  5 06:38 shared/HITS.pool.root.1
[2026-02-05 06:39:48]  *** Contents of shared directory: ***
[2026-02-05 06:39:48] total 677000
[2026-02-05 06:39:48] -rw-r--r-- 2 boincer umatlas 502201650 Feb  5 04:59 ATLAS.root_0
[2026-02-05 06:39:48] -rw-r--r-- 2 boincer umatlas     15845 Feb  5 04:59 start_atlas.sh
[2026-02-05 06:39:48] -rw-r--r-- 2 boincer umatlas    597755 Feb  5 04:59 input.tar.gz
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas 189165075 Feb  5 06:38 HITS.pool.root.1
[2026-02-05 06:39:48] -rw------- 1 boincer umatlas   1259520 Feb  5 06:39 result.tar.gz
06:39:49 (3875353): run_atlas exited; CPU time 44044.136152
06:39:49 (3875353): called boinc_finish(0)

</stderr_txt>
]]>

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