Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:38:34 (4976): wrapper (7.7.26015): starting
15:38:34 (4976): wrapper: running run_atlas (--nthreads 12)
[2026-02-04 15:38:34] Arguments: --nthreads 12
[2026-02-04 15:38:34] Threads: 12
[2026-02-04 15:38:34] Checking for CVMFS
[2026-02-04 15:38:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 15:38:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 15:38:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 15:38:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 15:38:34] 2.11.2.0 3103 178947 112444 155877 0 1 11493049 20275201 1 130560 0 76793643 99.923 9451166 30707 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-04 15:38:34] CVMFS is ok
[2026-02-04 15:38:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 15:38:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 15:38:34] Further information can be found at the LHC@home message board.
[2026-02-04 15:38:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 15:38:34] Checking for apptainer binary...
[2026-02-04 15:38:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 15:38:34] Running /usr/bin/apptainer --version
[2026-02-04 15:38:34] apptainer version 1.3.2-1.el7
[2026-02-04 15:38:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 15:38:36] c-115-41.aglt2.org
[2026-02-04 15:38:36] apptainer works
[2026-02-04 15:38:36] Set ATHENA_PROC_NUMBER=12
[2026-02-04 15:38:36] Set ATHENA_CORE_NUMBER=12
[2026-02-04 15:38:36] Starting ATLAS job with PandaID=6993748624
[2026-02-04 15:38:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 16:54:09]  *** The last 200 lines of the pilot log: ***
[2026-02-04 16:54:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-04 16:54:09]  is_altstaged=None
[2026-02-04 16:54:09]  is_tar=False
[2026-02-04 16:54:09]  lfn=log.48318042._006392.job.log.tgz.1
[2026-02-04 16:54:09]  mtime=0
[2026-02-04 16:54:09]  protocol_id=None
[2026-02-04 16:54:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-04 16:54:09]  replicas=None
[2026-02-04 16:54:09]  scope=mc23_13p6TeV
[2026-02-04 16:54:09]  status=None
[2026-02-04 16:54:09]  status_code=0
[2026-02-04 16:54:09]  storage_token=
[2026-02-04 16:54:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6993748624/log.48318042._006392.job.log.tgz.1
[2026-02-04 16:54:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/a2/log.48318042._006392.job.log.tgz.1
[2026-02-04 16:54:09]  workdir=None
[2026-02-04 16:54:09] ]
[2026-02-04 16:54:09] 2026-02-04 21:53:15,341 | INFO     | transferring file log.48318042._006392.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6993748624/log.48318042._006392.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-04 16:54:09] 2026-02-04 21:53:15,341 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6993748624/log.48318042._006392.job.log.tgz.1 /tmp/boinchome/slots/0/log.48318042._006392.job
[2026-02-04 16:54:09] 2026-02-04 21:53:15,364 | INFO     | adding to output.list: log.48318042._006392.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/a2/log.48318042._006392.job.log.tg
[2026-02-04 16:54:09] 2026-02-04 21:53:15,365 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-04 16:54:09] 2026-02-04 21:53:15,365 | INFO     | summary of transferred files:
[2026-02-04 16:54:09] 2026-02-04 21:53:15,365 | INFO     |  -- lfn=log.48318042._006392.job.log.tgz.1, status_code=0, status=transferred
[2026-02-04 16:54:09] 2026-02-04 21:53:15,366 | INFO     | stage-out finished correctly
[2026-02-04 16:54:09] 2026-02-04 21:53:16,888 | INFO     | time since job start (4460s) is within the limit (349056.0s)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,164 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-04 16:54:09] 2026-02-04 21:53:18,649 | INFO     | job 6993748624 has state=finished
[2026-02-04 16:54:09] 2026-02-04 21:53:18,649 | INFO     | preparing for final server update for job 6993748624 in state='finished'
[2026-02-04 16:54:09] 2026-02-04 21:53:18,664 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6993748624/jobReport.json
[2026-02-04 16:54:09] 2026-02-04 21:53:18,666 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-04 16:54:09] 2026-02-04 21:53:18,667 | INFO     | this job has now completed (state=finished)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,667 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,667 | INFO     | log transfer has been attempted: DONE
[2026-02-04 16:54:09] 2026-02-04 21:53:18,667 | INFO     | job 6993748624 has finished - writing final server update
[2026-02-04 16:54:09] 2026-02-04 21:53:18,667 | INFO     | total number of processed events: 400 (read)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,669 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6993748624/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,669 | INFO     | extracted standard info from prmon json
[2026-02-04 16:54:09] 2026-02-04 21:53:18,670 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 16:54:09] 2026-02-04 21:53:18,670 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 16:54:09] 2026-02-04 21:53:18,670 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 16:54:09] 2026-02-04 21:53:18,670 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 16:54:09] 2026-02-04 21:53:18,671 | INFO     | fitting pss+swap vs Time
[2026-02-04 16:54:09] 2026-02-04 21:53:18,672 | INFO     | sum of square deviations: 89127252.5
[2026-02-04 16:54:09] 2026-02-04 21:53:18,672 | INFO     | sum of deviations: -5784250275.0
[2026-02-04 16:54:09] 2026-02-04 21:53:18,672 | INFO     | mean x: 1770239847.5
[2026-02-04 16:54:09] 2026-02-04 21:53:18,672 | INFO     | mean y: 2820505.6363636362
[2026-02-04 16:54:09] 2026-02-04 21:53:18,672 | INFO     | intersect: 114889233331.13924
[2026-02-04 16:54:09] 2026-02-04 21:53:18,672 | INFO     | chi2: 0.14795269205832778
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | current memory leak: -64.90 B/s (using 66 data points, chi2=0.15)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | could have reported an average CPU frequency of 1695 MHz (6 samples)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | ..............................
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | . Timing measurements:
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | . get job = 0 s
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | . initial setup = 7 s
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | . payload setup = 7 s
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | . stage-in = 0 s
[2026-02-04 16:54:09] 2026-02-04 21:53:18,673 | INFO     | . payload execution = 4436 s
[2026-02-04 16:54:09] 2026-02-04 21:53:18,674 | INFO     | . stage-out = 0 s
[2026-02-04 16:54:09] 2026-02-04 21:53:18,674 | INFO     | . log creation = 0 s
[2026-02-04 16:54:09] 2026-02-04 21:53:18,674 | INFO     | ..............................
[2026-02-04 16:54:09] 2026-02-04 21:53:18,745 | INFO     | 
[2026-02-04 16:54:09] 2026-02-04 21:53:18,745 | INFO     | job summary report
[2026-02-04 16:54:09] 2026-02-04 21:53:18,745 | INFO     | --------------------------------------------------
[2026-02-04 16:54:09] 2026-02-04 21:53:18,745 | INFO     | PanDA job id: 6993748624
[2026-02-04 16:54:09] 2026-02-04 21:53:18,746 | INFO     | task id: 48318042
[2026-02-04 16:54:09] 2026-02-04 21:53:18,746 | INFO     | errors: (none)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,746 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 16:54:09] 2026-02-04 21:53:18,746 | INFO     | pilot state: finished 
[2026-02-04 16:54:09] 2026-02-04 21:53:18,746 | INFO     | transexitcode: 0
[2026-02-04 16:54:09] 2026-02-04 21:53:18,746 | INFO     | exeerrorcode: 0
[2026-02-04 16:54:09] 2026-02-04 21:53:18,747 | INFO     | exeerrordiag: 
[2026-02-04 16:54:09] 2026-02-04 21:53:18,747 | INFO     | exitcode: 0
[2026-02-04 16:54:09] 2026-02-04 21:53:18,747 | INFO     | exitmsg: OK
[2026-02-04 16:54:09] 2026-02-04 21:53:18,747 | INFO     | cpuconsumptiontime: 46536 s
[2026-02-04 16:54:09] 2026-02-04 21:53:18,747 | INFO     | nevents: 400
[2026-02-04 16:54:09] 2026-02-04 21:53:18,747 | INFO     | neventsw: 0
[2026-02-04 16:54:09] 2026-02-04 21:53:18,748 | INFO     | pid: 13230
[2026-02-04 16:54:09] 2026-02-04 21:53:18,748 | INFO     | pgrp: 13230
[2026-02-04 16:54:09] 2026-02-04 21:53:18,748 | INFO     | corecount: 12
[2026-02-04 16:54:09] 2026-02-04 21:53:18,748 | INFO     | event service: False
[2026-02-04 16:54:09] 2026-02-04 21:53:18,748 | INFO     | sizes: {0: 2278286, 11: 2278286, 4447: 2304310, 4448: 2313308, 4451: 2313558}
[2026-02-04 16:54:09] 2026-02-04 21:53:18,748 | INFO     | --------------------------------------------------
[2026-02-04 16:54:09] 2026-02-04 21:53:18,748 | INFO     | 
[2026-02-04 16:54:09] 2026-02-04 21:53:18,749 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-04 16:54:09] 2026-02-04 21:53:18,775 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,775 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,775 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,776 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,777 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,778 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,778 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,778 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,778 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 16:54:09] 2026-02-04 21:53:18,779 | INFO     | job 6993748624 has completed (purged errors)
[2026-02-04 16:54:09] 2026-02-04 21:53:18,779 | INFO     | overall cleanup function is called
[2026-02-04 16:54:09] 2026-02-04 21:53:19,786 | INFO     | --- collectZombieJob: --- 10, [13230]
[2026-02-04 16:54:09] 2026-02-04 21:53:19,786 | INFO     | zombie collector waiting for pid 13230
[2026-02-04 16:54:09] 2026-02-04 21:53:19,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 16:54:09] 2026-02-04 21:53:19,787 | INFO     | collected zombie processes
[2026-02-04 16:54:09] 2026-02-04 21:53:19,787 | INFO     | will attempt to kill all subprocesses of pid=13230
[2026-02-04 16:54:09] 2026-02-04 21:53:19,871 | INFO     | process IDs to be killed: [13230] (in reverse order)
[2026-02-04 16:54:09] 2026-02-04 21:53:19,925 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 16:54:09] 2026-02-04 21:53:19,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 16:54:09] 2026-02-04 21:53:19,929 | INFO     | did not find any defunct processes belonging to 13230
[2026-02-04 16:54:09] 2026-02-04 21:53:19,931 | INFO     | did not find any defunct processes belonging to 13230
[2026-02-04 16:54:09] 2026-02-04 21:53:19,931 | INFO     | ready for new job
[2026-02-04 16:54:09] 2026-02-04 21:53:19,931 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 16:54:09] 2026-02-04 21:53:19,932 | INFO     | **************************************
[2026-02-04 16:54:09] 2026-02-04 21:53:19,933 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 16:54:09] 2026-02-04 21:53:19,933 | INFO     | **************************************
[2026-02-04 16:54:09] 2026-02-04 21:53:19,933 | INFO     | 
[2026-02-04 16:54:09] 2026-02-04 21:53:19,933 | INFO     | architecture information:
[2026-02-04 16:54:09] 2026-02-04 21:53:19,934 | INFO     | executing command: cat /etc/os-release
[2026-02-04 16:54:09] 2026-02-04 21:53:19,949 | INFO     | cat /etc/os-release:
[2026-02-04 16:54:09] NAME="CentOS Linux"
[2026-02-04 16:54:09] VERSION="7 (Core)"
[2026-02-04 16:54:09] ID="centos"
[2026-02-04 16:54:09] ID_LIKE="rhel fedora"
[2026-02-04 16:54:09] VERSION_ID="7"
[2026-02-04 16:54:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 16:54:09] ANSI_COLOR="0;31"
[2026-02-04 16:54:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 16:54:09] HOME_URL="https://www.centos.org/"
[2026-02-04 16:54:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 16:54:09] 
[2026-02-04 16:54:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 16:54:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 16:54:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 16:54:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 16:54:09] 
[2026-02-04 16:54:09] 2026-02-04 21:53:19,949 | INFO     | **************************************
[2026-02-04 16:54:09] 2026-02-04 21:53:20,452 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-04 16:54:09] 2026-02-04 21:53:20,469 | INFO     | sufficient remaining disk space (18028167168 B)
[2026-02-04 16:54:09] 2026-02-04 21:53:20,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 16:54:09] 2026-02-04 21:53:20,469 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 16:54:09] 2026-02-04 21:53:20,469 | INFO     | update_server=False
[2026-02-04 16:54:09] 2026-02-04 21:53:20,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 16:54:09] 2026-02-04 21:53:20,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 16:54:09] 2026-02-04 21:53:20,470 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 16:54:09] 2026-02-04 21:53:20,642 | WARNING  | process 13230 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 16:54:09] 2026-02-04 21:53:20,712 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 16:54:09] 2026-02-04 21:53:20,753 | INFO     | all payload control threads have been joined
[2026-02-04 16:54:09] 2026-02-04 21:53:20,796 | INFO     | number of running child processes to parent process 13230: 1
[2026-02-04 16:54:09] 2026-02-04 21:53:20,796 | INFO     | maximum number of monitored processes: 6
[2026-02-04 16:54:09] 2026-02-04 21:53:20,796 | INFO     | aborting job monitoring since job object (job id=6993748624) has expired
[2026-02-04 16:54:09] 2026-02-04 21:53:20,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 16:54:09] 2026-02-04 21:53:20,796 | INFO     | will abort loop
[2026-02-04 16:54:09] 2026-02-04 21:53:20,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 16:54:09] 2026-02-04 21:53:21,368 | INFO     | all data control threads have been joined
[2026-02-04 16:54:09] 2026-02-04 21:53:21,475 | INFO     | [job] retrieve thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:21,476 | INFO     | [job] queue monitor thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:21,508 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:21,756 | INFO     | [payload] control thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:21,801 | INFO     | [job] job monitor thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:21,836 | INFO     | all job control threads have been joined
[2026-02-04 16:54:09] 2026-02-04 21:53:21,844 | INFO     | [data] copytool_in thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:22,063 | INFO     | [payload] validate_post thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:22,374 | INFO     | [data] control thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:22,614 | INFO     | [job] validate thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:22,769 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:22,770 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:22,841 | INFO     | [job] control thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:22,952 | INFO     | [data] copytool_out thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:23,064 | INFO     | [payload] failed_post thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:24,476 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:30,678 | INFO     | job.realtimelogging is not enabled
[2026-02-04 16:54:09] 2026-02-04 21:53:31,680 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 16:54:09] 2026-02-04 21:53:48,681 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-02-04 16:54:09] 2026-02-04 21:53:50,081 | INFO     | PID=8737 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-04 16:54:09] 2026-02-04 21:53:50,081 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 16:54:09] 2026-02-04 21:53:50,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 16:54:09] 2026-02-04 21:53:50,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 16:54:09] 2026-02-04 21:54:02,733 | INFO     | [monitor] cgroup control has ended
[2026-02-04 16:54:09] 2026-02-04 21:54:03,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139807161853760)>', '<ExcThread(monitor, started 139806738732800)>']
[2026-02-04 16:54:09] 2026-02-04 21:54:04,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 16:54:09] 2026-02-04 21:54:04,152 | INFO     | [monitor] control thread has ended
[2026-02-04 16:54:09] 2026-02-04 21:54:08,761 | INFO     | all workflow threads have been joined
[2026-02-04 16:54:09] 2026-02-04 21:54:08,761 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 16:54:09] 2026-02-04 21:54:08,761 | INFO     | traces error code: 0
[2026-02-04 16:54:09] 2026-02-04 21:54:08,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 16:54:09] 2026-02-04 21:54:08,843 [wrapper] ==== pilot stdout END ====
[2026-02-04 16:54:09] 2026-02-04 21:54:08,847 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 16:54:09] 2026-02-04 21:54:08,850 [wrapper] pilotpid: 8737
[2026-02-04 16:54:09] 2026-02-04 21:54:08,853 [wrapper] Pilot exit status: 0
[2026-02-04 16:54:09] 2026-02-04 21:54:08,867 [wrapper] pandaids: 6993748624
[2026-02-04 16:54:09] 2026-02-04 21:54:08,909 [wrapper] cleanup supervisor_pilot 12858 8738
[2026-02-04 16:54:09] 2026-02-04 21:54:08,913 [wrapper] Test setup, not cleaning
[2026-02-04 16:54:09] 2026-02-04 21:54:08,916 [wrapper] apfmon messages muted
[2026-02-04 16:54:09] 2026-02-04 21:54:08,921 [wrapper] ==== wrapper stdout END ====
[2026-02-04 16:54:09] 2026-02-04 21:54:08,924 [wrapper] ==== wrapper stderr END ====
[2026-02-04 16:54:09]  *** Error codes and diagnostics ***
[2026-02-04 16:54:09]     "exeErrorCode": 0,
[2026-02-04 16:54:09]     "exeErrorDiag": "",
[2026-02-04 16:54:09]     "pilotErrorCode": 0,
[2026-02-04 16:54:09]     "pilotErrorDiag": "",
[2026-02-04 16:54:09]  *** Listing of results directory ***
[2026-02-04 16:54:09] total 667680
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas    584422 Feb  2 23:59 pilot3.tar.gz
[2026-02-04 16:54:09] -rwx------ 1 boincer umatlas     36322 Feb  3 00:01 runpilot2-wrapper.sh
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas      5111 Feb  3 00:02 queuedata.json
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas       100 Feb  4 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 16:54:09] -rwxr-xr-x 1 boincer umatlas      7986 Feb  4 15:38 run_atlas
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas       105 Feb  4 15:38 job.xml
[2026-02-04 16:54:09] -rw-r--r-- 2 boincer umatlas 494675563 Feb  4 15:38 EVNT.48318040._000123.pool.root.1
[2026-02-04 16:54:09] -rw-r--r-- 2 boincer umatlas     15845 Feb  4 15:38 start_atlas.sh
[2026-02-04 16:54:09] drwxrwx--x 2 boincer umatlas      4096 Feb  4 15:38 shared
[2026-02-04 16:54:09] -rw-r--r-- 2 boincer umatlas    597761 Feb  4 15:38 input.tar.gz
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas         0 Feb  4 15:38 boinc_lockfile
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas      2536 Feb  4 15:38 pandaJob.out
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas        57 Feb  4 15:38 setup.sh.local
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas   1009552 Feb  4 15:38 agis_schedconf.cvmfs.json
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas   1511668 Feb  4 15:38 agis_ddmendpoints.agis.ALL.json
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas       434 Feb  4 15:38 workernode_map.json
[2026-02-04 16:54:09] drwx------ 5 boincer umatlas      4096 Feb  4 15:38 pilot3
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas      5953 Feb  4 16:45 init_data.xml
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas 182970569 Feb  4 16:52 HITS.48318042._006392.pool.root.1
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas       530 Feb  4 16:52 boinc_task_state.xml
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas      1045 Feb  4 16:53 memory_monitor_summary.json
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas    404829 Feb  4 16:53 log.48318042._006392.job.log.tgz.1
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas      6408 Feb  4 16:53 heartbeat.json
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas        95 Feb  4 16:53 pilot_heartbeat.json
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas      8192 Feb  4 16:53 boinc_mmap_file
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas        27 Feb  4 16:53 wrapper_checkpoint.txt
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas      5330 Feb  4 16:54 pilotlog.txt
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas    650738 Feb  4 16:54 log.48318042._006392.job.log.1
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas       357 Feb  4 16:54 output.list
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas       620 Feb  4 16:54 runtime_log
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas   1075200 Feb  4 16:54 result.tar.gz
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas      9343 Feb  4 16:54 runtime_log.err
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas       659 Feb  4 16:54 bIeLDmeiN78n9Rq4apOajLDm4fhM0noT9bVooX4SDmiwTKDmdKlK4m.diag
[2026-02-04 16:54:09] -rw-r--r-- 1 boincer umatlas     21371 Feb  4 16:54 stderr.txt
[2026-02-04 16:54:09] HITS file was successfully produced:
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas 182970569 Feb  4 16:52 shared/HITS.pool.root.1
[2026-02-04 16:54:09]  *** Contents of shared directory: ***
[2026-02-04 16:54:09] total 663428
[2026-02-04 16:54:09] -rw-r--r-- 2 boincer umatlas 494675563 Feb  4 15:38 ATLAS.root_0
[2026-02-04 16:54:09] -rw-r--r-- 2 boincer umatlas     15845 Feb  4 15:38 start_atlas.sh
[2026-02-04 16:54:09] -rw-r--r-- 2 boincer umatlas    597761 Feb  4 15:38 input.tar.gz
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas 182970569 Feb  4 16:52 HITS.pool.root.1
[2026-02-04 16:54:09] -rw------- 1 boincer umatlas   1075200 Feb  4 16:54 result.tar.gz
16:54:10 (4976): run_atlas exited; CPU time 46503.473834
16:54:10 (4976): called boinc_finish(0)

</stderr_txt>
]]>

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