Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:55:40 (1691538): wrapper (7.7.26015): starting
14:55:40 (1691538): wrapper: running run_atlas (--nthreads 9)
[2026-02-04 14:55:40] Arguments: --nthreads 9
[2026-02-04 14:55:40] Threads: 9
[2026-02-04 14:55:40] Checking for CVMFS
[2026-02-04 14:55:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 14:55:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 14:55:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 14:55:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 14:55:40] 2.13.3.0 6658 59021 375980 155876 1 335 40586364 40960001 13062 16776704 0 134130860 99.680 126295876 39638 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-04 14:55:40] CVMFS is ok
[2026-02-04 14:55:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 14:55:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 14:55:40] Further information can be found at the LHC@home message board.
[2026-02-04 14:55:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 14:55:40] Checking for apptainer binary...
[2026-02-04 14:55:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 14:55:40] Running /usr/bin/apptainer --version
[2026-02-04 14:55:40] apptainer version 1.4.5-2.el9
[2026-02-04 14:55:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 14:55:40] c-206-38.aglt2.org
[2026-02-04 14:55:40] apptainer works
[2026-02-04 14:55:40] Set ATHENA_PROC_NUMBER=9
[2026-02-04 14:55:40] Set ATHENA_CORE_NUMBER=9
[2026-02-04 14:55:40] Starting ATLAS job with PandaID=6999410238
[2026-02-04 14:55:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 16:20:17]  *** The last 200 lines of the pilot log: ***
[2026-02-04 16:20:17]  guid=4843a32f-b116-4f77-94f6-59982ac63679
[2026-02-04 16:20:17]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-04 16:20:17]  is_altstaged=None
[2026-02-04 16:20:17]  is_tar=False
[2026-02-04 16:20:17]  lfn=log.48317952._010656.job.log.tgz.1
[2026-02-04 16:20:17]  mtime=0
[2026-02-04 16:20:17]  protocol_id=None
[2026-02-04 16:20:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-04 16:20:17]  replicas=None
[2026-02-04 16:20:17]  scope=mc23_13p6TeV
[2026-02-04 16:20:17]  status=None
[2026-02-04 16:20:17]  status_code=0
[2026-02-04 16:20:17]  storage_token=
[2026-02-04 16:20:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6999410238/log.48317952._010656.job.log.tgz.1
[2026-02-04 16:20:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/a3/log.48317952._010656.job.log.tgz.1
[2026-02-04 16:20:17]  workdir=None
[2026-02-04 16:20:17] ]
[2026-02-04 16:20:17] 2026-02-04 21:19:43,501 | INFO     | transferring file log.48317952._010656.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6999410238/log.48317952._010656.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-04 16:20:17] 2026-02-04 21:19:43,501 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6999410238/log.48317952._010656.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317952._010656.job
[2026-02-04 16:20:17] 2026-02-04 21:19:43,523 | INFO     | adding to output.list: log.48317952._010656.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/a3/log.48317952._010656.job.log.tg
[2026-02-04 16:20:17] 2026-02-04 21:19:43,524 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-04 16:20:17] 2026-02-04 21:19:43,524 | INFO     | summary of transferred files:
[2026-02-04 16:20:17] 2026-02-04 21:19:43,524 | INFO     |  -- lfn=log.48317952._010656.job.log.tgz.1, status_code=0, status=transferred
[2026-02-04 16:20:17] 2026-02-04 21:19:43,527 | INFO     | stage-out finished correctly
[2026-02-04 16:20:17] 2026-02-04 21:19:43,597 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-04 16:20:17] 2026-02-04 21:19:44,144 | INFO     | time since job start (5028s) is within the limit (349056.0s)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,064 | INFO     | job 6999410238 has state=finished
[2026-02-04 16:20:17] 2026-02-04 21:19:45,064 | INFO     | preparing for final server update for job 6999410238 in state='finished'
[2026-02-04 16:20:17] 2026-02-04 21:19:45,064 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6999410238/jobReport.json
[2026-02-04 16:20:17] 2026-02-04 21:19:45,067 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-04 16:20:17] 2026-02-04 21:19:45,067 | INFO     | this job has now completed (state=finished)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,067 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,067 | INFO     | log transfer has been attempted: DONE
[2026-02-04 16:20:17] 2026-02-04 21:19:45,067 | INFO     | job 6999410238 has finished - writing final server update
[2026-02-04 16:20:17] 2026-02-04 21:19:45,068 | INFO     | total number of processed events: 400 (read)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,078 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6999410238/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,078 | INFO     | extracted standard info from prmon json
[2026-02-04 16:20:17] 2026-02-04 21:19:45,079 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 16:20:17] 2026-02-04 21:19:45,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 16:20:17] 2026-02-04 21:19:45,079 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 16:20:17] 2026-02-04 21:19:45,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 16:20:17] 2026-02-04 21:19:45,081 | INFO     | fitting pss+swap vs Time
[2026-02-04 16:20:17] 2026-02-04 21:19:45,081 | INFO     | sum of square deviations: 130795103.9466669
[2026-02-04 16:20:17] 2026-02-04 21:19:45,081 | INFO     | sum of deviations: -15879879118.440004
[2026-02-04 16:20:17] 2026-02-04 21:19:45,081 | INFO     | mean x: 1770237541.0266666
[2026-02-04 16:20:17] 2026-02-04 21:19:45,081 | INFO     | mean y: 2735731.72
[2026-02-04 16:20:17] 2026-02-04 21:19:45,081 | INFO     | intersect: 214927892057.8358
[2026-02-04 16:20:17] 2026-02-04 21:19:45,081 | INFO     | chi2: 0.13079529101755327
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | current memory leak: -121.41 B/s (using 75 data points, chi2=0.13)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | could have reported an average CPU frequency of 3290 MHz (6 samples)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | ..............................
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | . Timing measurements:
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | . get job = 0 s
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | . initial setup = 7 s
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | . payload setup = 6 s
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | . stage-in = 0 s
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | . payload execution = 5005 s
[2026-02-04 16:20:17] 2026-02-04 21:19:45,082 | INFO     | . stage-out = 0 s
[2026-02-04 16:20:17] 2026-02-04 21:19:45,085 | INFO     | . log creation = 0 s
[2026-02-04 16:20:17] 2026-02-04 21:19:45,085 | INFO     | ..............................
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | 
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | job summary report
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | --------------------------------------------------
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | PanDA job id: 6999410238
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | task id: 48317952
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | errors: (none)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | pilot state: finished 
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | transexitcode: 0
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | exeerrorcode: 0
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | exeerrordiag: 
[2026-02-04 16:20:17] 2026-02-04 21:19:45,143 | INFO     | exitcode: 0
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | exitmsg: OK
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | cpuconsumptiontime: 34724 s
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | nevents: 400
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | neventsw: 0
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | pid: 1700042
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | pgrp: 1700042
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | corecount: 9
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | event service: False
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | sizes: {0: 2277896, 1: 2278300, 11: 2278300, 5015: 2304712, 5016: 2313766, 5018: 2313904}
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | --------------------------------------------------
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | 
[2026-02-04 16:20:17] 2026-02-04 21:19:45,144 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-04 16:20:17] 2026-02-04 21:19:45,163 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,163 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,163 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,163 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,164 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,165 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,165 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 16:20:17] 2026-02-04 21:19:45,165 | INFO     | job 6999410238 has completed (purged errors)
[2026-02-04 16:20:17] 2026-02-04 21:19:45,165 | INFO     | overall cleanup function is called
[2026-02-04 16:20:17] 2026-02-04 21:19:46,175 | INFO     | --- collectZombieJob: --- 10, [1700042]
[2026-02-04 16:20:17] 2026-02-04 21:19:46,175 | INFO     | zombie collector waiting for pid 1700042
[2026-02-04 16:20:17] 2026-02-04 21:19:46,175 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 16:20:17] 2026-02-04 21:19:46,175 | INFO     | collected zombie processes
[2026-02-04 16:20:17] 2026-02-04 21:19:46,175 | INFO     | will attempt to kill all subprocesses of pid=1700042
[2026-02-04 16:20:17] 2026-02-04 21:19:46,444 | INFO     | process IDs to be killed: [1700042] (in reverse order)
[2026-02-04 16:20:17] 2026-02-04 21:19:46,570 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 16:20:17] 2026-02-04 21:19:46,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 16:20:17] 2026-02-04 21:19:46,583 | INFO     | did not find any defunct processes belonging to 1700042
[2026-02-04 16:20:17] 2026-02-04 21:19:46,598 | INFO     | did not find any defunct processes belonging to 1700042
[2026-02-04 16:20:17] 2026-02-04 21:19:46,598 | INFO     | ready for new job
[2026-02-04 16:20:17] 2026-02-04 21:19:46,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 16:20:17] 2026-02-04 21:19:46,600 | INFO     | **************************************
[2026-02-04 16:20:17] 2026-02-04 21:19:46,600 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 16:20:17] 2026-02-04 21:19:46,600 | INFO     | **************************************
[2026-02-04 16:20:17] 2026-02-04 21:19:46,600 | INFO     | 
[2026-02-04 16:20:17] 2026-02-04 21:19:46,603 | INFO     | architecture information:
[2026-02-04 16:20:17] 2026-02-04 21:19:46,604 | INFO     | executing command: cat /etc/os-release
[2026-02-04 16:20:17] 2026-02-04 21:19:46,624 | INFO     | cat /etc/os-release:
[2026-02-04 16:20:17] NAME="CentOS Linux"
[2026-02-04 16:20:17] VERSION="7 (Core)"
[2026-02-04 16:20:17] ID="centos"
[2026-02-04 16:20:17] ID_LIKE="rhel fedora"
[2026-02-04 16:20:17] VERSION_ID="7"
[2026-02-04 16:20:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 16:20:17] ANSI_COLOR="0;31"
[2026-02-04 16:20:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 16:20:17] HOME_URL="https://www.centos.org/"
[2026-02-04 16:20:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 16:20:17] 
[2026-02-04 16:20:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 16:20:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 16:20:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 16:20:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 16:20:17] 
[2026-02-04 16:20:17] 2026-02-04 21:19:46,625 | INFO     | **************************************
[2026-02-04 16:20:17] 2026-02-04 21:19:47,127 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-04 16:20:17] 2026-02-04 21:19:47,151 | INFO     | sufficient remaining disk space (85890957312 B)
[2026-02-04 16:20:17] 2026-02-04 21:19:47,152 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 16:20:17] 2026-02-04 21:19:47,152 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 16:20:17] 2026-02-04 21:19:47,152 | INFO     | update_server=False
[2026-02-04 16:20:17] 2026-02-04 21:19:47,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 16:20:17] 2026-02-04 21:19:47,152 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 16:20:17] 2026-02-04 21:19:47,822 | INFO     | all data control threads have been joined
[2026-02-04 16:20:17] 2026-02-04 21:19:48,157 | INFO     | [job] retrieve thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:48,159 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:48,304 | INFO     | [payload] validate_post thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:48,493 | WARNING  | process 1700042 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 16:20:17] 2026-02-04 21:19:48,506 | INFO     | all payload control threads have been joined
[2026-02-04 16:20:17] 2026-02-04 21:19:48,729 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:48,733 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 16:20:17] 2026-02-04 21:19:48,795 | INFO     | all job control threads have been joined
[2026-02-04 16:20:17] 2026-02-04 21:19:48,828 | INFO     | [data] control thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:48,991 | INFO     | [data] copytool_in thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:48,999 | INFO     | number of running child processes to parent process 1700042: 1
[2026-02-04 16:20:17] 2026-02-04 21:19:48,999 | INFO     | maximum number of monitored processes: 6
[2026-02-04 16:20:17] 2026-02-04 21:19:48,999 | INFO     | aborting job monitoring since job object (job id=6999410238) has expired
[2026-02-04 16:20:17] 2026-02-04 21:19:49,000 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 16:20:17] 2026-02-04 21:19:49,000 | INFO     | will abort loop
[2026-02-04 16:20:17] 2026-02-04 21:19:49,097 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:49,160 | INFO     | [data] copytool_out thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:49,433 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:49,511 | INFO     | [payload] control thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:49,553 | INFO     | [payload] failed_post thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:49,658 | INFO     | [job] validate thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:49,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 16:20:17] 2026-02-04 21:19:49,800 | INFO     | [job] control thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:50,005 | INFO     | [job] job monitor thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:50,152 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 16:20:17] 2026-02-04 21:19:51,159 | INFO     | [job] queue monitor thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:19:53,685 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 16:20:17] 2026-02-04 21:20:04,494 | INFO     | [monitor] cgroup control has ended
[2026-02-04 16:20:17] 2026-02-04 21:20:04,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663939958592)>', '<ExcThread(monitor, started 140663551137536)>']
[2026-02-04 16:20:17] 2026-02-04 21:20:09,979 | INFO     | all workflow threads have been joined
[2026-02-04 16:20:17] 2026-02-04 21:20:09,980 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 16:20:17] 2026-02-04 21:20:09,980 | INFO     | traces error code: 0
[2026-02-04 16:20:17] 2026-02-04 21:20:09,980 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 16:20:17] 2026-02-04 21:20:17,551 | INFO     | PID=1695208 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 16:20:17] 2026-02-04 21:20:17,551 | INFO     | .. there are 16 such processes running
[2026-02-04 16:20:17] 2026-02-04 21:20:17,552 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 16:20:17] 2026-02-04 21:20:17,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 16:20:17] 2026-02-04 21:20:17,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 16:20:17] 2026-02-04 21:20:17,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 16:20:17] 2026-02-04 21:20:17,552 | INFO     | [monitor] control thread has ended
[2026-02-04 16:20:17] 2026-02-04 21:20:17,759 [wrapper] ==== pilot stdout END ====
[2026-02-04 16:20:17] 2026-02-04 21:20:17,762 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 16:20:17] 2026-02-04 21:20:17,765 [wrapper] pilotpid: 1695208
[2026-02-04 16:20:17] 2026-02-04 21:20:17,768 [wrapper] Pilot exit status: 0
[2026-02-04 16:20:17] 2026-02-04 21:20:17,783 [wrapper] pandaids: 6999410238
[2026-02-04 16:20:17] 2026-02-04 21:20:17,850 [wrapper] cleanup supervisor_pilot 1874190 1695209
[2026-02-04 16:20:17] 2026-02-04 21:20:17,854 [wrapper] Test setup, not cleaning
[2026-02-04 16:20:17] 2026-02-04 21:20:17,858 [wrapper] apfmon messages muted
[2026-02-04 16:20:17] 2026-02-04 21:20:17,862 [wrapper] ==== wrapper stdout END ====
[2026-02-04 16:20:17] 2026-02-04 21:20:17,866 [wrapper] ==== wrapper stderr END ====
[2026-02-04 16:20:17]  *** Error codes and diagnostics ***
[2026-02-04 16:20:17]     "exeErrorCode": 0,
[2026-02-04 16:20:17]     "exeErrorDiag": "",
[2026-02-04 16:20:17]     "pilotErrorCode": 0,
[2026-02-04 16:20:17]     "pilotErrorDiag": "",
[2026-02-04 16:20:17]  *** Listing of results directory ***
[2026-02-04 16:20:17] total 676668
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas    584422 Feb  3 08:23 pilot3.tar.gz
[2026-02-04 16:20:17] -rwx------. 1 boincer umatlas     36322 Feb  3 08:24 runpilot2-wrapper.sh
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas      5111 Feb  3 08:26 queuedata.json
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas       100 Feb  4 14:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 16:20:17] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  4 14:55 run_atlas
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas       105 Feb  4 14:55 job.xml
[2026-02-04 16:20:17] -rw-r--r--. 2 boincer umatlas 500683411 Feb  4 14:55 EVNT.48317949._000200.pool.root.1
[2026-02-04 16:20:17] -rw-r--r--. 2 boincer umatlas     15845 Feb  4 14:55 start_atlas.sh
[2026-02-04 16:20:17] drwxrwx--x. 2 boincer umatlas      4096 Feb  4 14:55 shared
[2026-02-04 16:20:17] -rw-r--r--. 2 boincer umatlas    597762 Feb  4 14:55 input.tar.gz
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas         0 Feb  4 14:55 boinc_lockfile
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas      2522 Feb  4 14:55 pandaJob.out
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas        57 Feb  4 14:55 setup.sh.local
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas   1009544 Feb  4 14:55 agis_schedconf.cvmfs.json
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas   1511668 Feb  4 14:55 agis_ddmendpoints.agis.ALL.json
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas       429 Feb  4 14:55 workernode_map.json
[2026-02-04 16:20:17] drwx------. 5 boincer umatlas      4096 Feb  4 14:55 pilot3
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas       530 Feb  4 16:19 boinc_task_state.xml
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas 186048440 Feb  4 16:19 HITS.48317952._010656.pool.root.1
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas      6904 Feb  4 16:19 init_data.xml
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas        95 Feb  4 16:19 pilot_heartbeat.json
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas      1033 Feb  4 16:19 memory_monitor_summary.json
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas    384892 Feb  4 16:19 log.48317952._010656.job.log.tgz.1
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas      6337 Feb  4 16:19 heartbeat.json
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas      8192 Feb  4 16:20 boinc_mmap_file
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas        27 Feb  4 16:20 wrapper_checkpoint.txt
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas       823 Feb  4 16:20 pilotlog.txt
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas    735290 Feb  4 16:20 log.48317952._010656.job.log.1
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas       357 Feb  4 16:20 output.list
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas       620 Feb  4 16:20 runtime_log
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas   1136640 Feb  4 16:20 result.tar.gz
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas       653 Feb  4 16:20 woqMDmKZV78n9Rq4apOajLDm4fhM0noT9bVooX4SDmrgUKDmJMQMVn.diag
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas      9341 Feb  4 16:20 runtime_log.err
[2026-02-04 16:20:17] -rw-r--r--. 1 boincer umatlas     21401 Feb  4 16:20 stderr.txt
[2026-02-04 16:20:17] HITS file was successfully produced:
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas 186048440 Feb  4 16:19 shared/HITS.pool.root.1
[2026-02-04 16:20:17]  *** Contents of shared directory: ***
[2026-02-04 16:20:17] total 672356
[2026-02-04 16:20:17] -rw-r--r--. 2 boincer umatlas 500683411 Feb  4 14:55 ATLAS.root_0
[2026-02-04 16:20:17] -rw-r--r--. 2 boincer umatlas     15845 Feb  4 14:55 start_atlas.sh
[2026-02-04 16:20:17] -rw-r--r--. 2 boincer umatlas    597762 Feb  4 14:55 input.tar.gz
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas 186048440 Feb  4 16:19 HITS.pool.root.1
[2026-02-04 16:20:17] -rw-------. 1 boincer umatlas   1136640 Feb  4 16:20 result.tar.gz
16:20:19 (1691538): run_atlas exited; CPU time 34653.391707
16:20:19 (1691538): called boinc_finish(0)

</stderr_txt>
]]>

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