Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:31:51 (1459492): wrapper (7.7.26015): starting
15:31:51 (1459492): wrapper: running run_atlas (--nthreads 6)
[2026-02-05 15:31:51] Arguments: --nthreads 6
[2026-02-05 15:31:51] Threads: 6
[2026-02-05 15:31:51] Checking for CVMFS
[2026-02-05 15:31:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-05 15:31:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-05 15:31:51] Running cvmfs_config stat atlas.cern.ch
[2026-02-05 15:31:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-05 15:31:52] 2.13.3.0 1446042 5 47796 155891 3 188 50025986 52428801 885 130560 0 40084 99.969 433 16 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-02-05 15:31:52] CVMFS is ok
[2026-02-05 15:31:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-05 15:31:52] Checking for apptainer binary...
[2026-02-05 15:31:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-05 15:31:52] Running /usr/bin/apptainer --version
[2026-02-05 15:31:52] apptainer version 1.4.5-2.el9
[2026-02-05 15:31:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-05 15:31:52] testio008
[2026-02-05 15:31:52] apptainer works
[2026-02-05 15:31:52] Set ATHENA_PROC_NUMBER=6
[2026-02-05 15:31:52] Set ATHENA_CORE_NUMBER=6
[2026-02-05 15:31:52] Starting ATLAS job with PandaID=6995304142
[2026-02-05 15:31:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 16:44:17]  *** The last 200 lines of the pilot log: ***
[2026-02-05 16:44:17]  domain=
[2026-02-05 16:44:17]  filesize=314699
[2026-02-05 16:44:17]  filetype=log
[2026-02-05 16:44:17]  guid=ab39a46f-53aa-4e08-8421-aed7a911cb9c
[2026-02-05 16:44:17]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-05 16:44:17]  is_altstaged=None
[2026-02-05 16:44:17]  is_tar=False
[2026-02-05 16:44:17]  lfn=log.48318034._007965.job.log.tgz.1
[2026-02-05 16:44:17]  mtime=0
[2026-02-05 16:44:17]  protocol_id=None
[2026-02-05 16:44:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-05 16:44:17]  replicas=None
[2026-02-05 16:44:17]  scope=mc23_13p6TeV
[2026-02-05 16:44:17]  status=None
[2026-02-05 16:44:17]  status_code=0
[2026-02-05 16:44:17]  storage_token=
[2026-02-05 16:44:17]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6995304142/log.48318034._007965.job.log.tgz.1
[2026-02-05 16:44:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/00/log.48318034._007965.job.log.tgz.1
[2026-02-05 16:44:17]  workdir=None
[2026-02-05 16:44:17] ]
[2026-02-05 16:44:17] 2026-02-05 07:43:26,353 | INFO     | transferring file log.48318034._007965.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6995304142/log.48318034._007965.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-05 16:44:17] 2026-02-05 07:43:26,354 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6995304142/log.48318034._007965.job.log.tgz.1 /var/lib/boinc/slots/3/log.48318034._007965.job
[2026-02-05 16:44:17] 2026-02-05 07:43:26,367 | INFO     | adding to output.list: log.48318034._007965.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/00/log.48318034._007965.job.log.tg
[2026-02-05 16:44:17] 2026-02-05 07:43:26,368 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-05 16:44:17] 2026-02-05 07:43:26,368 | INFO     | summary of transferred files:
[2026-02-05 16:44:17] 2026-02-05 07:43:26,368 | INFO     |  -- lfn=log.48318034._007965.job.log.tgz.1, status_code=0, status=transferred
[2026-02-05 16:44:17] 2026-02-05 07:43:26,368 | INFO     | stage-out finished correctly
[2026-02-05 16:44:17] 2026-02-05 07:43:28,075 | INFO     | time since job start (4284s) is within the limit (349056.0s)
[2026-02-05 16:44:17] 2026-02-05 07:43:28,642 | INFO     | monitor loop #330: job 0:6995304142 is in state 'finished'
[2026-02-05 16:44:17] 2026-02-05 07:43:28,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,571 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-05 16:44:17] 2026-02-05 07:43:29,847 | INFO     | job 6995304142 has state=finished
[2026-02-05 16:44:17] 2026-02-05 07:43:29,847 | INFO     | preparing for final server update for job 6995304142 in state='finished'
[2026-02-05 16:44:17] 2026-02-05 07:43:29,847 | INFO     | reading metadata from: /var/lib/boinc/slots/3/PanDA_Pilot-6995304142/jobReport.json
[2026-02-05 16:44:17] 2026-02-05 07:43:29,851 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/3/workernode_map.json
[2026-02-05 16:44:17] 2026-02-05 07:43:29,851 | INFO     | this job has now completed (state=finished)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,851 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,852 | INFO     | log transfer has been attempted: DONE
[2026-02-05 16:44:17] 2026-02-05 07:43:29,852 | INFO     | job 6995304142 has finished - writing final server update
[2026-02-05 16:44:17] 2026-02-05 07:43:29,852 | INFO     | total number of processed events: 400 (read)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,854 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6995304142/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,854 | INFO     | extracted standard info from prmon json
[2026-02-05 16:44:17] 2026-02-05 07:43:29,854 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 16:44:17] 2026-02-05 07:43:29,854 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 16:44:17] 2026-02-05 07:43:29,855 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 16:44:17] 2026-02-05 07:43:29,855 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 16:44:17] 2026-02-05 07:43:29,856 | INFO     | fitting pss+swap vs Time
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | sum of square deviations: 77516360.98412688
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | sum of deviations: -5398365553.285715
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | mean x: 1770275340.015873
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | mean y: 2547411.285714286
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | intersect: 123287403589.32227
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | chi2: 0.030198992295415648
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | current memory leak: -69.64 B/s (using 63 data points, chi2=0.03)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | could have reported an average CPU frequency of 1994 MHz (6 samples)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | ..............................
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | . Timing measurements:
[2026-02-05 16:44:17] 2026-02-05 07:43:29,857 | INFO     | . get job = 0 s
[2026-02-05 16:44:17] 2026-02-05 07:43:29,858 | INFO     | . initial setup = 7 s
[2026-02-05 16:44:17] 2026-02-05 07:43:29,858 | INFO     | . payload setup = 3 s
[2026-02-05 16:44:17] 2026-02-05 07:43:29,858 | INFO     | . stage-in = 0 s
[2026-02-05 16:44:17] 2026-02-05 07:43:29,858 | INFO     | . payload execution = 4262 s
[2026-02-05 16:44:17] 2026-02-05 07:43:29,858 | INFO     | . stage-out = 0 s
[2026-02-05 16:44:17] 2026-02-05 07:43:29,858 | INFO     | . log creation = 0 s
[2026-02-05 16:44:17] 2026-02-05 07:43:29,858 | INFO     | ..............................
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | 
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | job summary report
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | --------------------------------------------------
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | PanDA job id: 6995304142
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | task id: 48318034
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | errors: (none)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | pilot state: finished 
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | transexitcode: 0
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | exeerrorcode: 0
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | exeerrordiag: 
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | exitcode: 0
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | exitmsg: OK
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | cpuconsumptiontime: 23774 s
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | nevents: 400
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | neventsw: 0
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | pid: 1467904
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | pgrp: 1467904
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | corecount: 6
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | event service: False
[2026-02-05 16:44:17] 2026-02-05 07:43:29,902 | INFO     | sizes: {0: 2278184, 11: 2278184, 4269: 2304341, 4270: 2313394, 4273: 2313394, 4274: 2313588}
[2026-02-05 16:44:17] 2026-02-05 07:43:29,903 | INFO     | --------------------------------------------------
[2026-02-05 16:44:17] 2026-02-05 07:43:29,903 | INFO     | 
[2026-02-05 16:44:17] 2026-02-05 07:43:29,903 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-02-05 16:44:17] 2026-02-05 07:43:29,911 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,911 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | job 6995304142 has completed (purged errors)
[2026-02-05 16:44:17] 2026-02-05 07:43:29,912 | INFO     | overall cleanup function is called
[2026-02-05 16:44:17] 2026-02-05 07:43:30,918 | INFO     | --- collectZombieJob: --- 10, [1467904]
[2026-02-05 16:44:17] 2026-02-05 07:43:30,918 | INFO     | zombie collector waiting for pid 1467904
[2026-02-05 16:44:17] 2026-02-05 07:43:30,918 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 16:44:17] 2026-02-05 07:43:30,918 | INFO     | collected zombie processes
[2026-02-05 16:44:17] 2026-02-05 07:43:30,918 | INFO     | will attempt to kill all subprocesses of pid=1467904
[2026-02-05 16:44:17] 2026-02-05 07:43:30,944 | INFO     | process IDs to be killed: [1467904] (in reverse order)
[2026-02-05 16:44:17] 2026-02-05 07:43:30,961 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 16:44:17] 2026-02-05 07:43:30,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 16:44:17] 2026-02-05 07:43:30,963 | INFO     | did not find any defunct processes belonging to 1467904
[2026-02-05 16:44:17] 2026-02-05 07:43:30,964 | INFO     | did not find any defunct processes belonging to 1467904
[2026-02-05 16:44:17] 2026-02-05 07:43:30,964 | INFO     | ready for new job
[2026-02-05 16:44:17] 2026-02-05 07:43:30,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 16:44:17] 2026-02-05 07:43:30,965 | INFO     | **************************************
[2026-02-05 16:44:17] 2026-02-05 07:43:30,965 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 16:44:17] 2026-02-05 07:43:30,965 | INFO     | **************************************
[2026-02-05 16:44:17] 2026-02-05 07:43:30,965 | INFO     | 
[2026-02-05 16:44:17] 2026-02-05 07:43:30,965 | INFO     | architecture information:
[2026-02-05 16:44:17] 2026-02-05 07:43:30,965 | INFO     | executing command: cat /etc/os-release
[2026-02-05 16:44:17] 2026-02-05 07:43:30,971 | INFO     | cat /etc/os-release:
[2026-02-05 16:44:17] NAME="CentOS Linux"
[2026-02-05 16:44:17] VERSION="7 (Core)"
[2026-02-05 16:44:17] ID="centos"
[2026-02-05 16:44:17] ID_LIKE="rhel fedora"
[2026-02-05 16:44:17] VERSION_ID="7"
[2026-02-05 16:44:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 16:44:17] ANSI_COLOR="0;31"
[2026-02-05 16:44:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 16:44:17] HOME_URL="https://www.centos.org/"
[2026-02-05 16:44:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 16:44:17] 
[2026-02-05 16:44:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 16:44:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 16:44:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 16:44:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 16:44:17] 
[2026-02-05 16:44:17] 2026-02-05 07:43:30,971 | INFO     | **************************************
[2026-02-05 16:44:17] 2026-02-05 07:43:31,473 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-02-05 16:44:17] 2026-02-05 07:43:31,480 | INFO     | sufficient remaining disk space (282826113024 B)
[2026-02-05 16:44:17] 2026-02-05 07:43:31,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 16:44:17] 2026-02-05 07:43:31,480 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 16:44:17] 2026-02-05 07:43:31,480 | INFO     | update_server=False
[2026-02-05 16:44:17] 2026-02-05 07:43:31,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 16:44:17] 2026-02-05 07:43:31,480 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 16:44:17] 2026-02-05 07:43:31,480 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 16:44:17] 2026-02-05 07:43:31,555 | INFO     | all job control threads have been joined
[2026-02-05 16:44:17] 2026-02-05 07:43:31,620 | INFO     | all payload control threads have been joined
[2026-02-05 16:44:17] 2026-02-05 07:43:31,649 | INFO     | job.realtimelogging is not enabled
[2026-02-05 16:44:17] 2026-02-05 07:43:31,901 | INFO     | all data control threads have been joined
[2026-02-05 16:44:17] 2026-02-05 07:43:31,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 16:44:17] 2026-02-05 07:43:32,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 16:44:17] 2026-02-05 07:43:32,150 | INFO     | aborting loop
[2026-02-05 16:44:17] 2026-02-05 07:43:32,485 | INFO     | [job] queue monitor thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,485 | INFO     | [job] retrieve thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,555 | INFO     | [payload] failed_post thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,560 | INFO     | [job] control thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,608 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,625 | INFO     | [payload] control thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,808 | INFO     | [job] validate thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,848 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:32,906 | INFO     | [data] control thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:33,123 | INFO     | [data] copytool_in thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:33,155 | INFO     | [job] job monitor thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:33,217 | INFO     | [payload] validate_post thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:33,721 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:33,951 | INFO     | [data] copytool_out thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:43:35,485 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 16:44:17] 2026-02-05 07:44:01,198 | INFO     | PID=1463279 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-05 16:44:17] 2026-02-05 07:44:01,198 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 16:44:17] 2026-02-05 07:44:01,198 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 16:44:17] 2026-02-05 07:44:01,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 16:44:17] 2026-02-05 07:44:11,373 | INFO     | [monitor] cgroup control has ended
[2026-02-05 16:44:17] 2026-02-05 07:44:11,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831616956224)>', '<ExcThread(monitor, started 139831335466752)>']
[2026-02-05 16:44:17] 2026-02-05 07:44:12,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 16:44:17] 2026-02-05 07:44:12,253 | INFO     | [monitor] control thread has ended
[2026-02-05 16:44:17] 2026-02-05 07:44:17,024 | INFO     | all workflow threads have been joined
[2026-02-05 16:44:17] 2026-02-05 07:44:17,024 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 16:44:17] 2026-02-05 07:44:17,024 | INFO     | traces error code: 0
[2026-02-05 16:44:17] 2026-02-05 07:44:17,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 16:44:17] 2026-02-05 07:44:17,104 [wrapper] ==== pilot stdout END ====
[2026-02-05 16:44:17] 2026-02-05 07:44:17,106 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 16:44:17] 2026-02-05 07:44:17,108 [wrapper] pilotpid: 1463279
[2026-02-05 16:44:17] 2026-02-05 07:44:17,109 [wrapper] Pilot exit status: 0
[2026-02-05 16:44:17] 2026-02-05 07:44:17,120 [wrapper] pandaids: 6995304142
[2026-02-05 16:44:17] 2026-02-05 07:44:17,138 [wrapper] cleanup supervisor_pilot 1472878 1463280
[2026-02-05 16:44:17] 2026-02-05 07:44:17,142 [wrapper] Test setup, not cleaning
[2026-02-05 16:44:17] 2026-02-05 07:44:17,144 [wrapper] apfmon messages muted
[2026-02-05 16:44:17] 2026-02-05 07:44:17,146 [wrapper] ==== wrapper stdout END ====
[2026-02-05 16:44:17] 2026-02-05 07:44:17,148 [wrapper] ==== wrapper stderr END ====
[2026-02-05 16:44:17]  *** Error codes and diagnostics ***
[2026-02-05 16:44:17]     "exeErrorCode": 0,
[2026-02-05 16:44:17]     "exeErrorDiag": "",
[2026-02-05 16:44:17]     "pilotErrorCode": 0,
[2026-02-05 16:44:17]     "pilotErrorDiag": "",
[2026-02-05 16:44:17]  *** Listing of results directory ***
[2026-02-05 16:44:17] total 663924
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc    584422 Feb  4 12:08 pilot3.tar.gz
[2026-02-05 16:44:17] -rwx------. 1 boinc boinc     36322 Feb  4 12:09 runpilot2-wrapper.sh
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc      5111 Feb  4 12:09 queuedata.json
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc       100 Feb  5 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 16:44:17] -rwxr-xr-x. 1 boinc boinc      7986 Feb  5 15:31 run_atlas
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc       105 Feb  5 15:31 job.xml
[2026-02-05 16:44:17] -rw-r--r--. 2 boinc boinc     15845 Feb  5 15:31 start_atlas.sh
[2026-02-05 16:44:17] drwxrwx--x. 2 boinc boinc        68 Feb  5 15:31 shared
[2026-02-05 16:44:17] -rw-r--r--. 2 boinc boinc    597768 Feb  5 15:31 input.tar.gz
[2026-02-05 16:44:17] -rw-r--r--. 2 boinc boinc 495942136 Feb  5 15:31 EVNT.48318032._000022.pool.root.1
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc         0 Feb  5 15:31 boinc_lockfile
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc      2535 Feb  5 15:31 pandaJob.out
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc   1009552 Feb  5 15:31 agis_schedconf.cvmfs.json
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc   1511668 Feb  5 15:32 agis_ddmendpoints.agis.ALL.json
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc       425 Feb  5 15:32 workernode_map.json
[2026-02-05 16:44:17] drwx------. 5 boinc boinc      4096 Feb  5 15:32 pilot3
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc      9529 Feb  5 15:35 init_data.xml
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc 178060100 Feb  5 16:43 HITS.48318034._007965.pool.root.1
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc       530 Feb  5 16:43 boinc_task_state.xml
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc      1011 Feb  5 16:43 memory_monitor_summary.json
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc        95 Feb  5 16:43 pilot_heartbeat.json
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc    314699 Feb  5 16:43 log.48318034._007965.job.log.tgz.1
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc      6307 Feb  5 16:43 heartbeat.json
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc      8192 Feb  5 16:44 boinc_mmap_file
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc        27 Feb  5 16:44 wrapper_checkpoint.txt
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc      4817 Feb  5 16:44 pilotlog.txt
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc    648377 Feb  5 16:44 log.48318034._007965.job.log.1
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc       357 Feb  5 16:44 output.list
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc       620 Feb  5 16:44 runtime_log
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc    983040 Feb  5 16:44 result.tar.gz
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc      8774 Feb  5 16:44 runtime_log.err
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc       642 Feb  5 16:44 apHKDmfRi78n9Rq4apOajLDm4fhM0noT9bVooX4SDmKBWKDmy130nn.diag
[2026-02-05 16:44:17] -rw-r--r--. 1 boinc boinc     20810 Feb  5 16:44 stderr.txt
[2026-02-05 16:44:17] HITS file was successfully produced:
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc 178060100 Feb  5 16:43 shared/HITS.pool.root.1
[2026-02-05 16:44:17]  *** Contents of shared directory: ***
[2026-02-05 16:44:17] total 659768
[2026-02-05 16:44:17] -rw-r--r--. 2 boinc boinc     15845 Feb  5 15:31 start_atlas.sh
[2026-02-05 16:44:17] -rw-r--r--. 2 boinc boinc    597768 Feb  5 15:31 input.tar.gz
[2026-02-05 16:44:17] -rw-r--r--. 2 boinc boinc 495942136 Feb  5 15:31 ATLAS.root_0
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc 178060100 Feb  5 16:43 HITS.pool.root.1
[2026-02-05 16:44:17] -rw-------. 1 boinc boinc    983040 Feb  5 16:44 result.tar.gz
16:44:18 (1459492): run_atlas exited; CPU time 23805.857411
16:44:18 (1459492): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN