Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:59:45 (2775959): wrapper (7.7.26015): starting
17:59:45 (2775959): wrapper: running run_atlas (--nthreads 2)
[2026-02-04 17:59:45] Arguments: --nthreads 2
[2026-02-04 17:59:45] Threads: 2
[2026-02-04 17:59:45] Checking for CVMFS
[2026-02-04 17:59:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 17:59:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 17:59:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 17:59:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 17:59:45] 2.9.2.0 1787973 10087 68940 155872 1 49 30095728 36864000 0 130560 0 2979068 99.978 344547 6590 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 17:59:45] CVMFS is ok
[2026-02-04 17:59:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 17:59:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 17:59:45] Further information can be found at the LHC@home message board.
[2026-02-04 17:59:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 17:59:45] Checking for apptainer binary...
[2026-02-04 17:59:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 17:59:45] Running /usr/bin/apptainer --version
[2026-02-04 17:59:45] apptainer version 1.4.1-1.1
[2026-02-04 17:59:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 17:59:45] magicA244
[2026-02-04 17:59:45] apptainer works
[2026-02-04 17:59:45] Set ATHENA_PROC_NUMBER=2
[2026-02-04 17:59:45] Set ATHENA_CORE_NUMBER=2
[2026-02-04 17:59:45] Starting ATLAS job with PandaID=6999410394
[2026-02-04 17:59:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 20:13:25]  *** The last 200 lines of the pilot log: ***
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | job 6999410394 has completed (purged errors)
[2026-02-04 20:13:25] 2026-02-04 19:13:01,414 | INFO     | overall cleanup function is called
[2026-02-04 20:13:25] 2026-02-04 19:13:01,645 | WARNING  | process 2784414 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 20:13:25] 2026-02-04 19:13:01,666 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 20:13:25] 2026-02-04 19:13:01,691 | INFO     | number of running child processes to parent process 2784414: 1
[2026-02-04 20:13:25] 2026-02-04 19:13:01,691 | INFO     | maximum number of monitored processes: 6
[2026-02-04 20:13:25] 2026-02-04 19:13:01,691 | INFO     | aborting job monitoring since job object (job id=6999410394) has expired
[2026-02-04 20:13:25] 2026-02-04 19:13:02,421 | INFO     | --- collectZombieJob: --- 10, [2784414]
[2026-02-04 20:13:25] 2026-02-04 19:13:02,421 | INFO     | zombie collector waiting for pid 2784414
[2026-02-04 20:13:25] 2026-02-04 19:13:02,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 20:13:25] 2026-02-04 19:13:02,423 | INFO     | collected zombie processes
[2026-02-04 20:13:25] 2026-02-04 19:13:02,423 | INFO     | will attempt to kill all subprocesses of pid=2784414
[2026-02-04 20:13:25] 2026-02-04 19:13:02,454 | INFO     | process IDs to be killed: [2784414] (in reverse order)
[2026-02-04 20:13:25] 2026-02-04 19:13:02,474 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 20:13:25] 2026-02-04 19:13:02,475 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 20:13:25] 2026-02-04 19:13:02,479 | INFO     | did not find any defunct processes belonging to 2784414
[2026-02-04 20:13:25] 2026-02-04 19:13:02,480 | INFO     | did not find any defunct processes belonging to 2784414
[2026-02-04 20:13:25] 2026-02-04 19:13:02,480 | INFO     | ready for new job
[2026-02-04 20:13:25] 2026-02-04 19:13:02,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 20:13:25] 2026-02-04 19:13:02,480 | INFO     | **************************************
[2026-02-04 20:13:25] 2026-02-04 19:13:02,480 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 20:13:25] 2026-02-04 19:13:02,480 | INFO     | **************************************
[2026-02-04 20:13:25] 2026-02-04 19:13:02,480 | INFO     | 
[2026-02-04 20:13:25] 2026-02-04 19:13:02,481 | INFO     | architecture information:
[2026-02-04 20:13:25] 2026-02-04 19:13:02,481 | INFO     | executing command: cat /etc/os-release
[2026-02-04 20:13:25] 2026-02-04 19:13:02,489 | INFO     | cat /etc/os-release:
[2026-02-04 20:13:25] NAME="CentOS Linux"
[2026-02-04 20:13:25] VERSION="7 (Core)"
[2026-02-04 20:13:25] ID="centos"
[2026-02-04 20:13:25] ID_LIKE="rhel fedora"
[2026-02-04 20:13:25] VERSION_ID="7"
[2026-02-04 20:13:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 20:13:25] ANSI_COLOR="0;31"
[2026-02-04 20:13:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 20:13:25] HOME_URL="https://www.centos.org/"
[2026-02-04 20:13:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 20:13:25] 
[2026-02-04 20:13:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 20:13:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 20:13:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 20:13:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 20:13:25] 
[2026-02-04 20:13:25] 2026-02-04 19:13:02,489 | INFO     | **************************************
[2026-02-04 20:13:25] 2026-02-04 19:13:02,993 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | INFO     | sufficient remaining disk space (494422458368 B)
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | INFO     | update_server=False
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | INFO     | aborting loop
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 20:13:25] 2026-02-04 19:13:03,004 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 20:13:25] 2026-02-04 19:13:03,059 | INFO     | all payload control threads have been joined
[2026-02-04 20:13:25] 2026-02-04 19:13:03,444 | INFO     | all data control threads have been joined
[2026-02-04 20:13:25] 2026-02-04 19:13:03,545 | INFO     | all job control threads have been joined
[2026-02-04 20:13:25] 2026-02-04 19:13:03,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 20:13:25] 2026-02-04 19:13:04,010 | INFO     | [job] retrieve thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:04,010 | INFO     | [job] queue monitor thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:04,011 | INFO     | [job] job monitor thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:04,065 | INFO     | [payload] control thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:04,451 | INFO     | [data] control thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:04,551 | INFO     | [job] control thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:04,600 | INFO     | [payload] failed_post thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:04,614 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:05,043 | INFO     | [payload] validate_post thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:05,045 | INFO     | [job] validate thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:05,116 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:05,180 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:05,211 | INFO     | [data] copytool_in thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:05,601 | INFO     | [data] copytool_out thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:07,011 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:13,325 | INFO     | job.realtimelogging is not enabled
[2026-02-04 20:13:25] 2026-02-04 19:13:14,331 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 20:13:25] 2026-02-04 19:13:19,538 | INFO     | [monitor] cgroup control has ended
[2026-02-04 20:13:25] 2026-02-04 19:13:20,274 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140168789014336)>', '<ExcThread(monitor, started 140167985747712)>']
[2026-02-04 20:13:25] 2026-02-04 19:13:21,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 20:13:25] 2026-02-04 19:13:21,105 | INFO     | [monitor] control thread has ended
[2026-02-04 20:13:25] 2026-02-04 19:13:25,300 | INFO     | all workflow threads have been joined
[2026-02-04 20:13:25] 2026-02-04 19:13:25,301 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 20:13:25] 2026-02-04 19:13:25,302 | INFO     | traces error code: 0
[2026-02-04 20:13:25] 2026-02-04 19:13:25,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 20:13:25] 2026-02-04 19:13:25,393 [wrapper] ==== pilot stdout END ====
[2026-02-04 20:13:25] 2026-02-04 19:13:25,396 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 20:13:25] 2026-02-04 19:13:25,399 [wrapper] pilotpid: 2779992
[2026-02-04 20:13:25] 2026-02-04 19:13:25,402 [wrapper] Pilot exit status: 0
[2026-02-04 20:13:25] 2026-02-04 19:13:25,411 [wrapper] pandaids: 6999410394
[2026-02-04 20:13:25] 2026-02-04 19:13:25,457 [wrapper] cleanup supervisor_pilot 2789411 2779993
[2026-02-04 20:13:25] 2026-02-04 19:13:25,465 [wrapper] Test setup, not cleaning
[2026-02-04 20:13:25] 2026-02-04 19:13:25,474 [wrapper] apfmon messages muted
[2026-02-04 20:13:25] 2026-02-04 19:13:25,483 [wrapper] ==== wrapper stdout END ====
[2026-02-04 20:13:25] 2026-02-04 19:13:25,492 [wrapper] ==== wrapper stderr END ====
[2026-02-04 20:13:25]  *** Error codes and diagnostics ***
[2026-02-04 20:13:25]     "exeErrorCode": 0,
[2026-02-04 20:13:25]     "exeErrorDiag": "",
[2026-02-04 20:13:25]     "pilotErrorCode": 0,
[2026-02-04 20:13:25]     "pilotErrorDiag": "",
[2026-02-04 20:13:25]  *** Listing of results directory ***
[2026-02-04 20:13:25] total 672868
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc    584422 Feb  3 14:23 pilot3.tar.gz
[2026-02-04 20:13:25] -rwx------ 1 boinc boinc     36322 Feb  3 14:24 runpilot2-wrapper.sh
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc      5111 Feb  3 14:26 queuedata.json
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc       100 Feb  4 17:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 20:13:25] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 17:59 run_atlas
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc       105 Feb  4 17:59 job.xml
[2026-02-04 20:13:25] -rw-r--r-- 2 boinc boinc 499990799 Feb  4 17:59 EVNT.48317889._000203.pool.root.1
[2026-02-04 20:13:25] -rw-r--r-- 2 boinc boinc    597750 Feb  4 17:59 input.tar.gz
[2026-02-04 20:13:25] -rw-r--r-- 2 boinc boinc     15845 Feb  4 17:59 start_atlas.sh
[2026-02-04 20:13:25] drwxrwx--x 2 boinc boinc      4096 Feb  4 17:59 shared
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc         0 Feb  4 17:59 boinc_setup_complete
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc      6209 Feb  4 17:59 init_data.xml
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc         0 Feb  4 17:59 boinc_lockfile
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc      2523 Feb  4 17:59 pandaJob.out
[2026-02-04 20:13:25] -rw------- 1 boinc boinc   1009236 Feb  4 18:00 agis_schedconf.cvmfs.json
[2026-02-04 20:13:25] -rw------- 1 boinc boinc   1511668 Feb  4 18:00 agis_ddmendpoints.agis.ALL.json
[2026-02-04 20:13:25] -rw------- 1 boinc boinc       420 Feb  4 18:00 workernode_map.json
[2026-02-04 20:13:25] drwx------ 5 boinc boinc      4096 Feb  4 18:00 pilot3
[2026-02-04 20:13:25] -rw------- 1 boinc boinc 182174948 Feb  4 20:12 HITS.48317892._010748.pool.root.1
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc       531 Feb  4 20:12 boinc_task_state.xml
[2026-02-04 20:13:25] -rw------- 1 boinc boinc        95 Feb  4 20:12 pilot_heartbeat.json
[2026-02-04 20:13:25] -rw------- 1 boinc boinc      1010 Feb  4 20:12 memory_monitor_summary.json
[2026-02-04 20:13:25] -rw------- 1 boinc boinc    314664 Feb  4 20:12 log.48317892._010748.job.log.tgz.1
[2026-02-04 20:13:25] -rw------- 1 boinc boinc      6294 Feb  4 20:13 heartbeat.json
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc      8192 Feb  4 20:13 boinc_mmap_file
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc        27 Feb  4 20:13 wrapper_checkpoint.txt
[2026-02-04 20:13:25] -rw------- 1 boinc boinc      4624 Feb  4 20:13 pilotlog.txt
[2026-02-04 20:13:25] -rw------- 1 boinc boinc   1145123 Feb  4 20:13 log.48317892._010748.job.log.1
[2026-02-04 20:13:25] -rw------- 1 boinc boinc       357 Feb  4 20:13 output.list
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc       620 Feb  4 20:13 runtime_log
[2026-02-04 20:13:25] -rw------- 1 boinc boinc   1474560 Feb  4 20:13 result.tar.gz
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc      8911 Feb  4 20:13 runtime_log.err
[2026-02-04 20:13:25] -rw------- 1 boinc boinc       660 Feb  4 20:13 SKPODmKZV78n9Rq4apOajLDm4fhM0noT9bVooX4SDmohUKDmmuTomm.diag
[2026-02-04 20:13:25] -rw-r--r-- 1 boinc boinc     12789 Feb  4 20:13 stderr.txt
[2026-02-04 20:13:25] HITS file was successfully produced:
[2026-02-04 20:13:25] -rw------- 1 boinc boinc 182174948 Feb  4 20:12 shared/HITS.pool.root.1
[2026-02-04 20:13:25]  *** Contents of shared directory: ***
[2026-02-04 20:13:25] total 668232
[2026-02-04 20:13:25] -rw-r--r-- 2 boinc boinc 499990799 Feb  4 17:59 ATLAS.root_0
[2026-02-04 20:13:25] -rw-r--r-- 2 boinc boinc    597750 Feb  4 17:59 input.tar.gz
[2026-02-04 20:13:25] -rw-r--r-- 2 boinc boinc     15845 Feb  4 17:59 start_atlas.sh
[2026-02-04 20:13:25] -rw------- 1 boinc boinc 182174948 Feb  4 20:12 HITS.pool.root.1
[2026-02-04 20:13:25] -rw------- 1 boinc boinc   1474560 Feb  4 20:13 result.tar.gz
20:13:27 (2775959): run_atlas exited; CPU time 15551.926826
20:13:27 (2775959): called boinc_finish(0)

</stderr_txt>
]]>

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