Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:46:08 (2209341): wrapper (7.7.26015): starting
20:46:08 (2209341): wrapper: running run_atlas (--nthreads 4)
[2026-02-05 20:46:08] Arguments: --nthreads 4
[2026-02-05 20:46:08] Threads: 4
[2026-02-05 20:46:08] Checking for CVMFS
[2026-02-05 20:46:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-05 20:46:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-05 20:46:08] Running cvmfs_config stat atlas.cern.ch
[2026-02-05 20:46:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-05 20:46:09] 2.12.7.0 127240 2893 60412 155915 2 188 3933119 4096000 917 130560 0 1639481 99.756 436751 575 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.210:3128 1
[2026-02-05 20:46:09] CVMFS is ok
[2026-02-05 20:46:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-05 20:46:09] Checking for apptainer binary...
[2026-02-05 20:46:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-05 20:46:09] Running /usr/bin/apptainer --version
[2026-02-05 20:46:09] apptainer version 1.4.5
[2026-02-05 20:46:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-05 20:46:09] TC-910
[2026-02-05 20:46:09] apptainer works
[2026-02-05 20:46:09] Set ATHENA_PROC_NUMBER=4
[2026-02-05 20:46:09] Set ATHENA_CORE_NUMBER=4
[2026-02-05 20:46:09] Starting ATLAS job with PandaID=7000475857
[2026-02-05 20:46:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:01:02 (38486): wrapper (7.7.26015): starting
21:01:02 (38486): wrapper: running run_atlas (--nthreads 4)
[2026-02-05 21:01:02] Arguments: --nthreads 4
[2026-02-05 21:01:02] Threads: 4
[2026-02-05 21:01:02] This job has been restarted, cleaning up previous attempt
[2026-02-05 21:01:02] Checking for CVMFS
[2026-02-05 21:01:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-05 21:01:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-05 21:01:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-05 21:01:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-05 21:01:02] 2.12.7.0 5375 7 52312 155915 0 186 2328421 4096001 917 130560 0 33642 99.046 117566 1314 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.210:3128 1
[2026-02-05 21:01:02] CVMFS is ok
[2026-02-05 21:01:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-05 21:01:02] Checking for apptainer binary...
[2026-02-05 21:01:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-05 21:01:02] Running /usr/bin/apptainer --version
[2026-02-05 21:01:02] apptainer version 1.4.5
[2026-02-05 21:01:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-05 21:01:02] TC-910
[2026-02-05 21:01:02] apptainer works
[2026-02-05 21:01:02] Set ATHENA_PROC_NUMBER=4
[2026-02-05 21:01:02] Set ATHENA_CORE_NUMBER=4
[2026-02-05 21:01:02] Starting ATLAS job with PandaID=7000475857
[2026-02-05 21:01:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 23:42:29]  *** The last 200 lines of the pilot log: ***
[2026-02-05 23:42:29] 2026-02-05 22:41:24,907 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,907 | INFO     | log transfer has been attempted: DONE
[2026-02-05 23:42:29] 2026-02-05 22:41:24,907 | INFO     | job 7000475857 has finished - writing final server update
[2026-02-05 23:42:29] 2026-02-05 22:41:24,907 | INFO     | total number of processed events: 400 (read)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,908 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-7000475857/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,908 | INFO     | extracted standard info from prmon json
[2026-02-05 23:42:29] 2026-02-05 22:41:24,908 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 23:42:29] 2026-02-05 22:41:24,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 23:42:29] 2026-02-05 22:41:24,908 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 23:42:29] 2026-02-05 22:41:24,908 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 23:42:29] 2026-02-05 22:41:24,910 | INFO     | fitting pss+swap vs Time
[2026-02-05 23:42:29] 2026-02-05 22:41:24,910 | INFO     | sum of square deviations: 1223016419.5
[2026-02-05 23:42:29] 2026-02-05 22:41:24,910 | INFO     | sum of deviations: 1171145771.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,910 | INFO     | mean x: 1770326473.5
[2026-02-05 23:42:29] 2026-02-05 22:41:24,910 | INFO     | mean y: 2340197.5569620254
[2026-02-05 23:42:29] 2026-02-05 22:41:24,910 | INFO     | intersect: -1692903079.3701704
[2026-02-05 23:42:29] 2026-02-05 22:41:24,910 | INFO     | chi2: 1.9810374695140471
[2026-02-05 23:42:29] 2026-02-05 22:41:24,910 | INFO     | sum of square deviations: 1110539892.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | sum of deviations: 11201071808.000015
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | mean x: 1770326321.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | mean y: 2353437.137254902
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | intersect: -17853423188.231808
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | chi2: 1.1145059318750055
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | current chi2=1.1145059318750055 (change=43.74129974692522 %)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | sum of square deviations: 1005179777.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | sum of deviations: 10863052996.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | mean x: 1770326168.5
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | mean y: 2352947.7027027025
[2026-02-05 23:42:29] 2026-02-05 22:41:24,911 | INFO     | intersect: -19129694302.60835
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | chi2: 1.1155565226044486
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | current chi2=1.1155565226044486 (change=-0.09426515367896321 %)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | right removable region: 147
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | sum of square deviations: 1110539892.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | sum of deviations: -11882083128.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | mean x: 1770326626.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | mean y: 2357451.45751634
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | intersect: 18943746486.98418
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | chi2: 0.9352034815024314
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | current chi2=0.9352034815024314 (change=52.79223659854152 %)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,912 | INFO     | sum of square deviations: 1005179777.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | sum of deviations: -7872694343.000001
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | mean x: 1770326778.5
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | mean y: 2351640.8243243243
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | intersect: 13867773462.137354
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | chi2: 0.9138857386416259
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | current chi2=0.9138857386416259 (change=2.2794764222389214 %)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | left removable region: 20
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | sum of square deviations: 635130048.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | sum of deviations: 3150212752.0000005
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | mean x: 1770326748.0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | mean y: 2363745.322834646
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | intersect: -8778366932.304138
[2026-02-05 23:42:29] 2026-02-05 22:41:24,913 | INFO     | chi2: 0.0013692684842218112
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | current memory leak: 4.96 B/s (using 127 data points, chi2=0.00)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | could have reported an average CPU frequency of 4000 MHz (9 samples)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | ..............................
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | . Timing measurements:
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | . get job = 0 s
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | . initial setup = 1 s
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | . payload setup = 3 s
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | . stage-in = 0 s
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | . payload execution = 9595 s
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | . stage-out = 0 s
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | . log creation = 0 s
[2026-02-05 23:42:29] 2026-02-05 22:41:24,914 | INFO     | ..............................
[2026-02-05 23:42:29] 2026-02-05 22:41:24,945 | INFO     | 
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | job summary report
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | --------------------------------------------------
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | PanDA job id: 7000475857
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | task id: 48317892
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | errors: (none)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | pilot state: finished 
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | transexitcode: 0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | exeerrorcode: 0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | exeerrordiag: 
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | exitcode: 0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | exitmsg: OK
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | cpuconsumptiontime: 32093 s
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | nevents: 400
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | neventsw: 0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | pid: 45471
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | pgrp: 45471
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | corecount: 4
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | event service: False
[2026-02-05 23:42:29] 2026-02-05 22:41:24,946 | INFO     | sizes: {0: 2283041, 11: 2283041, 9602: 2311624, 9604: 2320624, 9605: 2320680, 9606: 2320938}
[2026-02-05 23:42:29] 2026-02-05 22:41:24,947 | INFO     | --------------------------------------------------
[2026-02-05 23:42:29] 2026-02-05 22:41:24,947 | INFO     | 
[2026-02-05 23:42:29] 2026-02-05 22:41:24,947 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2026-02-05 23:42:29] 2026-02-05 22:41:24,954 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,954 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,955 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 23:42:29] 2026-02-05 22:41:24,956 | INFO     | job 7000475857 has completed (purged errors)
[2026-02-05 23:42:29] 2026-02-05 22:41:24,956 | INFO     | overall cleanup function is called
[2026-02-05 23:42:29] 2026-02-05 22:41:25,962 | INFO     | --- collectZombieJob: --- 10, [45471]
[2026-02-05 23:42:29] 2026-02-05 22:41:25,962 | INFO     | zombie collector waiting for pid 45471
[2026-02-05 23:42:29] 2026-02-05 22:41:25,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 23:42:29] 2026-02-05 22:41:25,962 | INFO     | collected zombie processes
[2026-02-05 23:42:29] 2026-02-05 22:41:25,962 | INFO     | will attempt to kill all subprocesses of pid=45471
[2026-02-05 23:42:29] 2026-02-05 22:41:26,015 | INFO     | process IDs to be killed: [45471] (in reverse order)
[2026-02-05 23:42:29] 2026-02-05 22:41:26,035 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 23:42:29] 2026-02-05 22:41:26,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 23:42:29] 2026-02-05 22:41:26,037 | INFO     | did not find any defunct processes belonging to 45471
[2026-02-05 23:42:29] 2026-02-05 22:41:26,039 | INFO     | did not find any defunct processes belonging to 45471
[2026-02-05 23:42:29] 2026-02-05 22:41:26,039 | INFO     | ready for new job
[2026-02-05 23:42:29] 2026-02-05 22:41:26,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 23:42:29] 2026-02-05 22:41:26,040 | INFO     | **************************************
[2026-02-05 23:42:29] 2026-02-05 22:41:26,040 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 23:42:29] 2026-02-05 22:41:26,040 | INFO     | **************************************
[2026-02-05 23:42:29] 2026-02-05 22:41:26,040 | INFO     | 
[2026-02-05 23:42:29] 2026-02-05 22:41:26,041 | INFO     | architecture information:
[2026-02-05 23:42:29] 2026-02-05 22:41:26,041 | INFO     | executing command: cat /etc/os-release
[2026-02-05 23:42:29] 2026-02-05 22:41:26,047 | INFO     | cat /etc/os-release:
[2026-02-05 23:42:29] NAME="CentOS Linux"
[2026-02-05 23:42:29] VERSION="7 (Core)"
[2026-02-05 23:42:29] ID="centos"
[2026-02-05 23:42:29] ID_LIKE="rhel fedora"
[2026-02-05 23:42:29] VERSION_ID="7"
[2026-02-05 23:42:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 23:42:29] ANSI_COLOR="0;31"
[2026-02-05 23:42:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 23:42:29] HOME_URL="https://www.centos.org/"
[2026-02-05 23:42:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 23:42:29] 
[2026-02-05 23:42:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 23:42:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 23:42:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 23:42:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 23:42:29] 
[2026-02-05 23:42:29] 2026-02-05 22:41:26,047 | INFO     | **************************************
[2026-02-05 23:42:29] 2026-02-05 22:41:26,550 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2026-02-05 23:42:29] 2026-02-05 22:41:26,556 | INFO     | sufficient remaining disk space (121889619968 B)
[2026-02-05 23:42:29] 2026-02-05 22:41:26,557 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 23:42:29] 2026-02-05 22:41:26,557 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 23:42:29] 2026-02-05 22:41:26,557 | INFO     | update_server=False
[2026-02-05 23:42:29] 2026-02-05 22:41:26,557 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 23:42:29] 2026-02-05 22:41:26,557 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 23:42:29] 2026-02-05 22:41:26,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 23:42:29] 2026-02-05 22:41:26,626 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 23:42:29] 2026-02-05 22:41:26,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 23:42:29] 2026-02-05 22:41:26,653 | INFO     | aborting loop
[2026-02-05 23:42:29] 2026-02-05 22:41:26,766 | INFO     | all job control threads have been joined
[2026-02-05 23:42:29] 2026-02-05 22:41:27,110 | INFO     | all data control threads have been joined
[2026-02-05 23:42:29] 2026-02-05 22:41:27,562 | INFO     | [job] retrieve thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:27,562 | INFO     | [job] queue monitor thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:27,594 | INFO     | [data] copytool_in thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:27,650 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:27,659 | INFO     | [job] job monitor thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:27,660 | INFO     | all payload control threads have been joined
[2026-02-05 23:42:29] 2026-02-05 22:41:27,743 | INFO     | [payload] validate_post thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:27,771 | INFO     | [job] control thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:28,052 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:28,115 | INFO     | [data] control thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:28,440 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:28,483 | INFO     | [payload] failed_post thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:28,630 | INFO     | [data] copytool_out thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:28,663 | INFO     | [payload] control thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:28,676 | INFO     | [job] validate thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:28,799 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:30,562 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 23:42:29] 2026-02-05 22:41:57,548 | INFO     | PID=42219 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-05 23:42:29] 2026-02-05 22:41:57,548 | INFO     | .. there are 2 such processes running
[2026-02-05 23:42:29] 2026-02-05 22:41:57,548 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 23:42:29] 2026-02-05 22:41:57,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 23:42:29] 2026-02-05 22:41:57,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 23:42:29] 2026-02-05 22:42:23,688 | INFO     | [monitor] cgroup control has ended
[2026-02-05 23:42:29] 2026-02-05 22:42:24,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140233075730240)>', '<ExcThread(monitor, started 140232720623360)>']
[2026-02-05 23:42:29] 2026-02-05 22:42:24,674 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 23:42:29] 2026-02-05 22:42:24,674 | INFO     | [monitor] control thread has ended
[2026-02-05 23:42:29] 2026-02-05 22:42:29,597 | INFO     | all workflow threads have been joined
[2026-02-05 23:42:29] 2026-02-05 22:42:29,597 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 23:42:29] 2026-02-05 22:42:29,597 | INFO     | traces error code: 0
[2026-02-05 23:42:29] 2026-02-05 22:42:29,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 23:42:29] 2026-02-05 22:42:29,649 [wrapper] ==== pilot stdout END ====
[2026-02-05 23:42:29] 2026-02-05 22:42:29,650 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 23:42:29] 2026-02-05 22:42:29,651 [wrapper] pilotpid: 42219
[2026-02-05 23:42:29] 2026-02-05 22:42:29,653 [wrapper] Pilot exit status: 0
[2026-02-05 23:42:29] 2026-02-05 22:42:29,657 [wrapper] pandaids: 7000475857 7000475857
[2026-02-05 23:42:29] 2026-02-05 22:42:29,670 [wrapper] cleanup supervisor_pilot  211673 42220
[2026-02-05 23:42:29] 2026-02-05 22:42:29,672 [wrapper] Test setup, not cleaning
[2026-02-05 23:42:29] 2026-02-05 22:42:29,673 [wrapper] apfmon messages muted
[2026-02-05 23:42:29] 2026-02-05 22:42:29,675 [wrapper] ==== wrapper stdout END ====
[2026-02-05 23:42:29] 2026-02-05 22:42:29,676 [wrapper] ==== wrapper stderr END ====
[2026-02-05 23:42:29]  *** Error codes and diagnostics ***
[2026-02-05 23:42:29]     "exeErrorCode": 0,
[2026-02-05 23:42:29]     "exeErrorDiag": "",
[2026-02-05 23:42:29]     "pilotErrorCode": 0,
[2026-02-05 23:42:29]     "pilotErrorDiag": "",
[2026-02-05 23:42:29]  *** Listing of results directory ***
[2026-02-05 23:42:29] insgesamt 1151196
[2026-02-05 23:42:29] drwx------ 5 boinc boinc      4096 14. Jan 11:00 pilot3
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc    584422  4. Feb 00:41 pilot3.tar.gz
[2026-02-05 23:42:29] -rwx------ 1 boinc boinc     36322  4. Feb 00:44 runpilot2-wrapper.sh
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc      5111  4. Feb 00:47 queuedata.json
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc       100  5. Feb 20:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 23:42:29] -rwxr-xr-x 1 boinc boinc      7986  5. Feb 20:46 run_atlas
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc       105  5. Feb 20:46 job.xml
[2026-02-05 23:42:29] -rw-r--r-- 3 boinc boinc 490636734  5. Feb 20:46 EVNT.48317889._000269.pool.root.1
[2026-02-05 23:42:29] -rw-r--r-- 3 boinc boinc 490636734  5. Feb 20:46 ATLAS.root_0
[2026-02-05 23:42:29] drwxrwx--x 2 boinc boinc      4096  5. Feb 20:46 shared
[2026-02-05 23:42:29] -rw-r--r-- 2 boinc boinc    597755  5. Feb 20:46 input.tar.gz
[2026-02-05 23:42:29] -rw-r--r-- 2 boinc boinc     15845  5. Feb 20:46 start_atlas.sh
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc         0  5. Feb 20:46 boinc_setup_complete
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc         0  5. Feb 20:46 boinc_lockfile
[2026-02-05 23:42:29] -rw------- 1 boinc boinc   1513144  5. Feb 20:46 agis_ddmendpoints.agis.ALL.json
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc      2523  5. Feb 21:01 pandaJob.out
[2026-02-05 23:42:29] -rw------- 1 boinc boinc        52  5. Feb 21:01 setup.sh.local
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc      9888  5. Feb 21:01 init_data.xml
[2026-02-05 23:42:29] -rw------- 1 boinc boinc   1007437  5. Feb 21:01 agis_schedconf.cvmfs.json
[2026-02-05 23:42:29] -rw------- 1 boinc boinc       416  5. Feb 21:01 workernode_map.json
[2026-02-05 23:42:29] -rw------- 1 boinc boinc 190129141  5. Feb 23:41 HITS.48317892._014052.pool.root.1
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc       530  5. Feb 23:41 boinc_task_state.xml
[2026-02-05 23:42:29] -rw------- 1 boinc boinc      1033  5. Feb 23:41 memory_monitor_summary.json
[2026-02-05 23:42:29] -rw------- 1 boinc boinc    340711  5. Feb 23:41 log.48317892._014052.job.log.tgz.1
[2026-02-05 23:42:29] -rw------- 1 boinc boinc      6336  5. Feb 23:41 heartbeat.json
[2026-02-05 23:42:29] -rw------- 1 boinc boinc        96  5. Feb 23:41 pilot_heartbeat.json
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc        27  5. Feb 23:42 wrapper_checkpoint.txt
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc      8192  5. Feb 23:42 boinc_mmap_file
[2026-02-05 23:42:29] -rw------- 1 boinc boinc      4819  5. Feb 23:42 pilotlog.txt
[2026-02-05 23:42:29] -rw------- 1 boinc boinc   1388776  5. Feb 23:42 log.48317892._014052.job.log.1
[2026-02-05 23:42:29] -rw------- 1 boinc boinc       357  5. Feb 23:42 output.list
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc       620  5. Feb 23:42 runtime_log
[2026-02-05 23:42:29] -rw------- 1 boinc boinc   1751040  5. Feb 23:42 result.tar.gz
[2026-02-05 23:42:29] -rw------- 1 boinc boinc       773  5. Feb 23:42 SjbLDmfFf78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYDWKDma4tpxm.diag
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc      9374  5. Feb 23:42 runtime_log.err
[2026-02-05 23:42:29] -rw-r--r-- 1 boinc boinc     22531  5. Feb 23:42 stderr.txt
[2026-02-05 23:42:29] HITS file was successfully produced:
[2026-02-05 23:42:29] -rw------- 1 boinc boinc 190129141  5. Feb 23:41 shared/HITS.pool.root.1
[2026-02-05 23:42:29]  *** Contents of shared directory: ***
[2026-02-05 23:42:29] insgesamt 667136
[2026-02-05 23:42:29] -rw-r--r-- 3 boinc boinc 490636734  5. Feb 20:46 ATLAS.root_0
[2026-02-05 23:42:29] -rw-r--r-- 2 boinc boinc    597755  5. Feb 20:46 input.tar.gz
[2026-02-05 23:42:29] -rw-r--r-- 2 boinc boinc     15845  5. Feb 20:46 start_atlas.sh
[2026-02-05 23:42:29] -rw------- 1 boinc boinc 190129141  5. Feb 23:41 HITS.pool.root.1
[2026-02-05 23:42:29] -rw------- 1 boinc boinc   1751040  5. Feb 23:42 result.tar.gz
23:42:31 (38486): run_atlas exited; CPU time 32181.797741
23:42:31 (38486): called boinc_finish(0)

</stderr_txt>
]]>

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