Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:00:02 (2762311): wrapper (7.7.26015): starting
16:00:02 (2762311): wrapper: running run_atlas (--nthreads 2)
[2026-02-04 16:00:02] Arguments: --nthreads 2
[2026-02-04 16:00:02] Threads: 2
[2026-02-04 16:00:02] Checking for CVMFS
[2026-02-04 16:00:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 16:00:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 16:00:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 16:00:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 16:00:02] 2.9.2.0 1787973 9967 69712 155866 0 188 30081166 36864001 0 130560 0 2938566 99.978 338096 6489 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 16:00:02] CVMFS is ok
[2026-02-04 16:00:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 16:00:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 16:00:02] Further information can be found at the LHC@home message board.
[2026-02-04 16:00:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 16:00:02] Checking for apptainer binary...
[2026-02-04 16:00:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 16:00:02] Running /usr/bin/apptainer --version
[2026-02-04 16:00:02] apptainer version 1.4.1-1.1
[2026-02-04 16:00:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 16:00:02] magicA244
[2026-02-04 16:00:02] apptainer works
[2026-02-04 16:00:02] Set ATHENA_PROC_NUMBER=2
[2026-02-04 16:00:02] Set ATHENA_CORE_NUMBER=2
[2026-02-04 16:00:03] Starting ATLAS job with PandaID=6994756625
[2026-02-04 16:00:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 17:59:40]  *** The last 200 lines of the pilot log: ***
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | job 6994756625 has completed (purged errors)
[2026-02-04 17:59:40] 2026-02-04 16:59:08,103 | INFO     | overall cleanup function is called
[2026-02-04 17:59:40] 2026-02-04 16:59:09,109 | INFO     | --- collectZombieJob: --- 10, [2770744]
[2026-02-04 17:59:40] 2026-02-04 16:59:09,110 | INFO     | zombie collector waiting for pid 2770744
[2026-02-04 17:59:40] 2026-02-04 16:59:09,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 17:59:40] 2026-02-04 16:59:09,110 | INFO     | collected zombie processes
[2026-02-04 17:59:40] 2026-02-04 16:59:09,110 | INFO     | will attempt to kill all subprocesses of pid=2770744
[2026-02-04 17:59:40] 2026-02-04 16:59:09,141 | INFO     | process IDs to be killed: [2770744] (in reverse order)
[2026-02-04 17:59:40] 2026-02-04 16:59:09,162 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 17:59:40] 2026-02-04 16:59:09,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 17:59:40] 2026-02-04 16:59:09,163 | INFO     | did not find any defunct processes belonging to 2770744
[2026-02-04 17:59:40] 2026-02-04 16:59:09,163 | INFO     | did not find any defunct processes belonging to 2770744
[2026-02-04 17:59:40] 2026-02-04 16:59:09,163 | INFO     | ready for new job
[2026-02-04 17:59:40] 2026-02-04 16:59:09,163 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 17:59:40] 2026-02-04 16:59:09,164 | INFO     | **************************************
[2026-02-04 17:59:40] 2026-02-04 16:59:09,164 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 17:59:40] 2026-02-04 16:59:09,164 | INFO     | **************************************
[2026-02-04 17:59:40] 2026-02-04 16:59:09,164 | INFO     | 
[2026-02-04 17:59:40] 2026-02-04 16:59:09,164 | INFO     | architecture information:
[2026-02-04 17:59:40] 2026-02-04 16:59:09,164 | INFO     | executing command: cat /etc/os-release
[2026-02-04 17:59:40] 2026-02-04 16:59:09,173 | INFO     | cat /etc/os-release:
[2026-02-04 17:59:40] NAME="CentOS Linux"
[2026-02-04 17:59:40] VERSION="7 (Core)"
[2026-02-04 17:59:40] ID="centos"
[2026-02-04 17:59:40] ID_LIKE="rhel fedora"
[2026-02-04 17:59:40] VERSION_ID="7"
[2026-02-04 17:59:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 17:59:40] ANSI_COLOR="0;31"
[2026-02-04 17:59:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 17:59:40] HOME_URL="https://www.centos.org/"
[2026-02-04 17:59:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 17:59:40] 
[2026-02-04 17:59:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 17:59:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 17:59:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 17:59:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 17:59:40] 
[2026-02-04 17:59:40] 2026-02-04 16:59:09,173 | INFO     | **************************************
[2026-02-04 17:59:40] 2026-02-04 16:59:09,676 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 17:59:40] 2026-02-04 16:59:09,688 | INFO     | sufficient remaining disk space (493948502016 B)
[2026-02-04 17:59:40] 2026-02-04 16:59:09,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 17:59:40] 2026-02-04 16:59:09,688 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 17:59:40] 2026-02-04 16:59:09,688 | INFO     | update_server=False
[2026-02-04 17:59:40] 2026-02-04 16:59:09,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 17:59:40] 2026-02-04 16:59:09,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 17:59:40] 2026-02-04 16:59:09,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 17:59:40] 2026-02-04 16:59:10,150 | INFO     | all data control threads have been joined
[2026-02-04 17:59:40] 2026-02-04 16:59:10,176 | INFO     | all payload control threads have been joined
[2026-02-04 17:59:40] 2026-02-04 16:59:10,258 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 17:59:40] 2026-02-04 16:59:10,258 | INFO     | aborting loop
[2026-02-04 17:59:40] 2026-02-04 16:59:10,694 | INFO     | [job] queue monitor thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:10,695 | INFO     | [job] retrieve thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:10,758 | INFO     | [payload] failed_post thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:10,864 | INFO     | [data] copytool_in thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:10,916 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:10,989 | INFO     | all job control threads have been joined
[2026-02-04 17:59:40] 2026-02-04 16:59:11,155 | INFO     | [data] control thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:11,182 | INFO     | [payload] control thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:11,264 | INFO     | [job] job monitor thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:11,285 | INFO     | [payload] validate_post thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:11,563 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 17:59:40] 2026-02-04 16:59:11,694 | INFO     | [data] copytool_out thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:11,764 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:11,960 | INFO     | [job] validate thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:11,995 | INFO     | [job] control thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:12,011 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:12,129 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:15,570 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 17:59:40] 2026-02-04 16:59:33,714 | INFO     | [monitor] cgroup control has ended
[2026-02-04 17:59:40] 2026-02-04 16:59:34,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944080992064)>', '<ExcThread(monitor, started 139943288485632)>']
[2026-02-04 17:59:40] 2026-02-04 16:59:39,032 | INFO     | all workflow threads have been joined
[2026-02-04 17:59:40] 2026-02-04 16:59:39,033 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 17:59:40] 2026-02-04 16:59:39,034 | INFO     | traces error code: 0
[2026-02-04 17:59:40] 2026-02-04 16:59:39,034 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 17:59:40] 2026-02-04 16:59:40,403 | INFO     | PID=2766339 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 17:59:40] 2026-02-04 16:59:40,403 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 17:59:40] 2026-02-04 16:59:40,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 17:59:40] 2026-02-04 16:59:40,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 17:59:40] 2026-02-04 16:59:40,403 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 17:59:40] 2026-02-04 16:59:40,403 | INFO     | [monitor] control thread has ended
[2026-02-04 17:59:40] 2026-02-04 16:59:40,444 [wrapper] ==== pilot stdout END ====
[2026-02-04 17:59:40] 2026-02-04 16:59:40,447 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 17:59:40] 2026-02-04 16:59:40,449 [wrapper] pilotpid: 2766339
[2026-02-04 17:59:40] 2026-02-04 16:59:40,452 [wrapper] Pilot exit status: 0
[2026-02-04 17:59:40] 2026-02-04 16:59:40,457 [wrapper] pandaids: 6994756625
[2026-02-04 17:59:40] 2026-02-04 16:59:40,469 [wrapper] cleanup supervisor_pilot 2775658 2766340
[2026-02-04 17:59:40] 2026-02-04 16:59:40,471 [wrapper] Test setup, not cleaning
[2026-02-04 17:59:40] 2026-02-04 16:59:40,473 [wrapper] apfmon messages muted
[2026-02-04 17:59:40] 2026-02-04 16:59:40,475 [wrapper] ==== wrapper stdout END ====
[2026-02-04 17:59:40] 2026-02-04 16:59:40,477 [wrapper] ==== wrapper stderr END ====
[2026-02-04 17:59:40]  *** Error codes and diagnostics ***
[2026-02-04 17:59:40]     "exeErrorCode": 0,
[2026-02-04 17:59:40]     "exeErrorDiag": "",
[2026-02-04 17:59:40]     "pilotErrorCode": 0,
[2026-02-04 17:59:40]     "pilotErrorDiag": "",
[2026-02-04 17:59:40]  *** Listing of results directory ***
[2026-02-04 17:59:40] total 665796
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc    584422 Feb  4 04:08 pilot3.tar.gz
[2026-02-04 17:59:40] -rwx------ 1 boinc boinc     36322 Feb  4 04:09 runpilot2-wrapper.sh
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc      5111 Feb  4 04:09 queuedata.json
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc       100 Feb  4 16:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 17:59:40] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 16:00 run_atlas
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc       105 Feb  4 16:00 job.xml
[2026-02-04 17:59:40] -rw-r--r-- 2 boinc boinc 494086855 Feb  4 16:00 EVNT.48442096._000033.pool.root.1
[2026-02-04 17:59:40] drwxrwx--x 2 boinc boinc      4096 Feb  4 16:00 shared
[2026-02-04 17:59:40] -rw-r--r-- 2 boinc boinc    597758 Feb  4 16:00 input.tar.gz
[2026-02-04 17:59:40] -rw-r--r-- 2 boinc boinc     15845 Feb  4 16:00 start_atlas.sh
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc         0 Feb  4 16:00 boinc_setup_complete
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc      6209 Feb  4 16:00 init_data.xml
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc         0 Feb  4 16:00 boinc_lockfile
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc      2527 Feb  4 16:00 pandaJob.out
[2026-02-04 17:59:40] -rw------- 1 boinc boinc   1009228 Feb  4 16:00 agis_schedconf.cvmfs.json
[2026-02-04 17:59:40] -rw------- 1 boinc boinc   1511668 Feb  4 16:00 agis_ddmendpoints.agis.ALL.json
[2026-02-04 17:59:40] -rw------- 1 boinc boinc       422 Feb  4 16:00 workernode_map.json
[2026-02-04 17:59:40] drwx------ 5 boinc boinc      4096 Feb  4 16:00 pilot3
[2026-02-04 17:59:40] -rw------- 1 boinc boinc 181178268 Feb  4 17:58 HITS.48442098._001616.pool.root.1
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc       530 Feb  4 17:58 boinc_task_state.xml
[2026-02-04 17:59:40] -rw------- 1 boinc boinc        95 Feb  4 17:58 pilot_heartbeat.json
[2026-02-04 17:59:40] -rw------- 1 boinc boinc      1010 Feb  4 17:59 memory_monitor_summary.json
[2026-02-04 17:59:40] -rw------- 1 boinc boinc    273562 Feb  4 17:59 log.48442098._001616.job.log.tgz.1
[2026-02-04 17:59:40] -rw------- 1 boinc boinc      6299 Feb  4 17:59 heartbeat.json
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc        27 Feb  4 17:59 wrapper_checkpoint.txt
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc      8192 Feb  4 17:59 boinc_mmap_file
[2026-02-04 17:59:40] -rw------- 1 boinc boinc       747 Feb  4 17:59 pilotlog.txt
[2026-02-04 17:59:40] -rw------- 1 boinc boinc   1023061 Feb  4 17:59 log.48442098._001616.job.log.1
[2026-02-04 17:59:40] -rw------- 1 boinc boinc       357 Feb  4 17:59 output.list
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc       620 Feb  4 17:59 runtime_log
[2026-02-04 17:59:40] -rw------- 1 boinc boinc   1310720 Feb  4 17:59 result.tar.gz
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc      8911 Feb  4 17:59 runtime_log.err
[2026-02-04 17:59:40] -rw------- 1 boinc boinc       660 Feb  4 17:59 e0JLDmuRi78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvbWKDmFbnm2m.diag
[2026-02-04 17:59:40] -rw-r--r-- 1 boinc boinc     11829 Feb  4 17:59 stderr.txt
[2026-02-04 17:59:40] HITS file was successfully produced:
[2026-02-04 17:59:40] -rw------- 1 boinc boinc 181178268 Feb  4 17:58 shared/HITS.pool.root.1
[2026-02-04 17:59:40]  *** Contents of shared directory: ***
[2026-02-04 17:59:40] total 661328
[2026-02-04 17:59:40] -rw-r--r-- 2 boinc boinc 494086855 Feb  4 16:00 ATLAS.root_0
[2026-02-04 17:59:40] -rw-r--r-- 2 boinc boinc    597758 Feb  4 16:00 input.tar.gz
[2026-02-04 17:59:40] -rw-r--r-- 2 boinc boinc     15845 Feb  4 16:00 start_atlas.sh
[2026-02-04 17:59:40] -rw------- 1 boinc boinc 181178268 Feb  4 17:58 HITS.pool.root.1
[2026-02-04 17:59:40] -rw------- 1 boinc boinc   1310720 Feb  4 17:59 result.tar.gz
17:59:42 (2762311): run_atlas exited; CPU time 13867.816943
17:59:42 (2762311): called boinc_finish(0)

</stderr_txt>
]]>

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