Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:11:43 (3988012): wrapper (7.7.26015): starting
15:11:43 (3988012): wrapper: running run_atlas (--nthreads 6)
[2026-02-04 15:11:43] Arguments: --nthreads 6
[2026-02-04 15:11:43] Threads: 6
[2026-02-04 15:11:43] Checking for CVMFS
[2026-02-04 15:11:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 15:12:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 15:12:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 15:12:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 15:12:02] 2.13.3.0 3947201 130 52124 155857 3 188 15081089 20971521 929 130560 0 134518 99.984 8311 22 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-02-04 15:12:02] CVMFS is ok
[2026-02-04 15:12:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 15:12:02] Checking for apptainer binary...
[2026-02-04 15:12:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 15:12:02] Running /usr/bin/apptainer --version
[2026-02-04 15:12:02] apptainer version 1.4.5-2.el9
[2026-02-04 15:12:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 15:12:03] testio005
[2026-02-04 15:12:03] apptainer works
[2026-02-04 15:12:03] Set ATHENA_PROC_NUMBER=6
[2026-02-04 15:12:03] Set ATHENA_CORE_NUMBER=6
[2026-02-04 15:12:03] Starting ATLAS job with PandaID=7000476744
[2026-02-04 15:12:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 17:09:32]  *** The last 200 lines of the pilot log: ***
[2026-02-04 17:09:32] 2026-02-04 08:08:38,451 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,451 | INFO     | log transfer has been attempted: DONE
[2026-02-04 17:09:32] 2026-02-04 08:08:38,451 | INFO     | job 7000476744 has finished - writing final server update
[2026-02-04 17:09:32] 2026-02-04 08:08:38,452 | INFO     | total number of processed events: 400 (read)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,455 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-7000476744/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,456 | INFO     | extracted standard info from prmon json
[2026-02-04 17:09:32] 2026-02-04 08:08:38,456 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 17:09:32] 2026-02-04 08:08:38,456 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 17:09:32] 2026-02-04 08:08:38,456 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 17:09:32] 2026-02-04 08:08:38,456 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 17:09:32] 2026-02-04 08:08:38,459 | INFO     | fitting pss+swap vs Time
[2026-02-04 17:09:32] 2026-02-04 08:08:38,459 | INFO     | sum of square deviations: 459368912.2807023
[2026-02-04 17:09:32] 2026-02-04 08:08:38,460 | INFO     | sum of deviations: 4775698805.877196
[2026-02-04 17:09:32] 2026-02-04 08:08:38,460 | INFO     | mean x: 1770189063.5438597
[2026-02-04 17:09:32] 2026-02-04 08:08:38,460 | INFO     | mean y: 2432729.8245614036
[2026-02-04 17:09:32] 2026-02-04 08:08:38,460 | INFO     | intersect: -18400836561.888943
[2026-02-04 17:09:32] 2026-02-04 08:08:38,460 | INFO     | chi2: 2.6506512028471065
[2026-02-04 17:09:32] 2026-02-04 08:08:38,460 | INFO     | sum of square deviations: 401536794.7706426
[2026-02-04 17:09:32] 2026-02-04 08:08:38,461 | INFO     | sum of deviations: 12185819749.422028
[2026-02-04 17:09:32] 2026-02-04 08:08:38,461 | INFO     | mean x: 1770188911.0458715
[2026-02-04 17:09:32] 2026-02-04 08:08:38,461 | INFO     | mean y: 2451584.7155963304
[2026-02-04 17:09:32] 2026-02-04 08:08:38,461 | INFO     | intersect: -53719158173.99183
[2026-02-04 17:09:32] 2026-02-04 08:08:38,461 | INFO     | chi2: 1.8960726215941122
[2026-02-04 17:09:32] 2026-02-04 08:08:38,462 | INFO     | current chi2=1.8960726215941122 (change=28.46766788638541 %)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,462 | INFO     | sum of square deviations: 348774539.75961506
[2026-02-04 17:09:32] 2026-02-04 08:08:38,462 | INFO     | sum of deviations: 11840988255.288465
[2026-02-04 17:09:32] 2026-02-04 08:08:38,462 | INFO     | mean x: 1770188758.5480769
[2026-02-04 17:09:32] 2026-02-04 08:08:38,463 | INFO     | mean y: 2450575.9423076925
[2026-02-04 17:09:32] 2026-02-04 08:08:38,463 | INFO     | intersect: -60095927918.251076
[2026-02-04 17:09:32] 2026-02-04 08:08:38,463 | INFO     | chi2: 1.899906562375073
[2026-02-04 17:09:32] 2026-02-04 08:08:38,463 | INFO     | current chi2=1.899906562375073 (change=-0.20220432156957804 %)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,463 | INFO     | right removable region: 103
[2026-02-04 17:09:32] 2026-02-04 08:08:38,463 | INFO     | sum of square deviations: 401533744.7706426
[2026-02-04 17:09:32] 2026-02-04 08:08:38,464 | INFO     | sum of deviations: -16729682846.211006
[2026-02-04 17:09:32] 2026-02-04 08:08:38,464 | INFO     | mean x: 1770189216.0458715
[2026-02-04 17:09:32] 2026-02-04 08:08:38,464 | INFO     | mean y: 2488693.642201835
[2026-02-04 17:09:32] 2026-02-04 08:08:38,464 | INFO     | intersect: 73756449719.12549
[2026-02-04 17:09:32] 2026-02-04 08:08:38,464 | INFO     | chi2: 0.8219829881913813
[2026-02-04 17:09:32] 2026-02-04 08:08:38,464 | INFO     | current chi2=0.8219829881913813 (change=68.98939448130797 %)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,465 | INFO     | sum of square deviations: 348768439.75961506
[2026-02-04 17:09:32] 2026-02-04 08:08:38,465 | INFO     | sum of deviations: -16111169974.47115
[2026-02-04 17:09:32] 2026-02-04 08:08:38,465 | INFO     | mean x: 1770189368.5480769
[2026-02-04 17:09:32] 2026-02-04 08:08:38,465 | INFO     | mean y: 2486866.394230769
[2026-02-04 17:09:32] 2026-02-04 08:08:38,466 | INFO     | intersect: 81775430035.61218
[2026-02-04 17:09:32] 2026-02-04 08:08:38,466 | INFO     | chi2: 0.8188961292302525
[2026-02-04 17:09:32] 2026-02-04 08:08:38,466 | INFO     | current chi2=0.8188961292302525 (change=0.3755380592390196 %)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,466 | INFO     | left removable region: 20
[2026-02-04 17:09:32] 2026-02-04 08:08:38,466 | INFO     | sum of square deviations: 177275296.69879472
[2026-02-04 17:09:32] 2026-02-04 08:08:38,467 | INFO     | sum of deviations: -6140508041.13253
[2026-02-04 17:09:32] 2026-02-04 08:08:38,467 | INFO     | mean x: 1770189338.060241
[2026-02-04 17:09:32] 2026-02-04 08:08:38,467 | INFO     | mean y: 2506144.626506024
[2026-02-04 17:09:32] 2026-02-04 08:08:38,467 | INFO     | intersect: 61318786907.39273
[2026-02-04 17:09:32] 2026-02-04 08:08:38,467 | INFO     | chi2: 0.01777649817668144
[2026-02-04 17:09:32] 2026-02-04 08:08:38,467 | INFO     | current memory leak: -34.64 B/s (using 83 data points, chi2=0.02)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | could have reported an average CPU frequency of 3285 MHz (7 samples)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | ..............................
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | . Timing measurements:
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | . get job = 0 s
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | . initial setup = 9 s
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | . payload setup = 6 s
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | . stage-in = 0 s
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | . payload execution = 6898 s
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | . stage-out = 0 s
[2026-02-04 17:09:32] 2026-02-04 08:08:38,468 | INFO     | . log creation = 0 s
[2026-02-04 17:09:32] 2026-02-04 08:08:38,469 | INFO     | ..............................
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | 
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | job summary report
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | --------------------------------------------------
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | PanDA job id: 7000476744
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | task id: 48317892
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | errors: (none)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | pilot state: finished 
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | transexitcode: 0
[2026-02-04 17:09:32] 2026-02-04 08:08:38,780 | INFO     | exeerrorcode: 0
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | exeerrordiag: 
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | exitcode: 0
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | exitmsg: OK
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | cpuconsumptiontime: 38566 s
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | nevents: 400
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | neventsw: 0
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | pid: 3996731
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | pgrp: 3996731
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | corecount: 6
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | event service: False
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | sizes: {0: 2277790, 1: 2278251, 11: 2278251, 6908: 2305529, 6909: 2305528, 6911: 2314766, 6913: 2314904}
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | --------------------------------------------------
[2026-02-04 17:09:32] 2026-02-04 08:08:38,781 | INFO     | 
[2026-02-04 17:09:32] 2026-02-04 08:08:38,782 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-02-04 17:09:32] 2026-02-04 08:08:38,799 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,800 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,801 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 17:09:32] 2026-02-04 08:08:38,802 | INFO     | job 7000476744 has completed (purged errors)
[2026-02-04 17:09:32] 2026-02-04 08:08:38,802 | INFO     | overall cleanup function is called
[2026-02-04 17:09:32] 2026-02-04 08:08:39,809 | INFO     | --- collectZombieJob: --- 10, [3996731]
[2026-02-04 17:09:32] 2026-02-04 08:08:39,809 | INFO     | zombie collector waiting for pid 3996731
[2026-02-04 17:09:32] 2026-02-04 08:08:39,809 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 17:09:32] 2026-02-04 08:08:39,809 | INFO     | collected zombie processes
[2026-02-04 17:09:32] 2026-02-04 08:08:39,809 | INFO     | will attempt to kill all subprocesses of pid=3996731
[2026-02-04 17:09:32] 2026-02-04 08:08:39,916 | INFO     | process IDs to be killed: [3996731] (in reverse order)
[2026-02-04 17:09:32] 2026-02-04 08:08:39,963 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 17:09:32] 2026-02-04 08:08:39,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 17:09:32] 2026-02-04 08:08:39,966 | INFO     | did not find any defunct processes belonging to 3996731
[2026-02-04 17:09:32] 2026-02-04 08:08:39,969 | INFO     | did not find any defunct processes belonging to 3996731
[2026-02-04 17:09:32] 2026-02-04 08:08:39,970 | INFO     | ready for new job
[2026-02-04 17:09:32] 2026-02-04 08:08:39,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 17:09:32] 2026-02-04 08:08:39,971 | INFO     | **************************************
[2026-02-04 17:09:32] 2026-02-04 08:08:39,971 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 17:09:32] 2026-02-04 08:08:39,971 | INFO     | **************************************
[2026-02-04 17:09:32] 2026-02-04 08:08:39,971 | INFO     | 
[2026-02-04 17:09:32] 2026-02-04 08:08:39,972 | INFO     | architecture information:
[2026-02-04 17:09:32] 2026-02-04 08:08:39,973 | INFO     | executing command: cat /etc/os-release
[2026-02-04 17:09:32] 2026-02-04 08:08:39,984 | INFO     | cat /etc/os-release:
[2026-02-04 17:09:32] NAME="CentOS Linux"
[2026-02-04 17:09:32] VERSION="7 (Core)"
[2026-02-04 17:09:32] ID="centos"
[2026-02-04 17:09:32] ID_LIKE="rhel fedora"
[2026-02-04 17:09:32] VERSION_ID="7"
[2026-02-04 17:09:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 17:09:32] ANSI_COLOR="0;31"
[2026-02-04 17:09:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 17:09:32] HOME_URL="https://www.centos.org/"
[2026-02-04 17:09:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 17:09:32] 
[2026-02-04 17:09:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 17:09:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 17:09:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 17:09:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 17:09:32] 
[2026-02-04 17:09:32] 2026-02-04 08:08:39,984 | INFO     | **************************************
[2026-02-04 17:09:32] 2026-02-04 08:08:40,487 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-02-04 17:09:32] 2026-02-04 08:08:40,500 | INFO     | sufficient remaining disk space (92270493696 B)
[2026-02-04 17:09:32] 2026-02-04 08:08:40,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 17:09:32] 2026-02-04 08:08:40,501 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 17:09:32] 2026-02-04 08:08:40,501 | INFO     | update_server=False
[2026-02-04 17:09:32] 2026-02-04 08:08:40,501 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 17:09:32] 2026-02-04 08:08:40,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 17:09:32] 2026-02-04 08:08:40,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 17:09:32] 2026-02-04 08:08:40,502 | INFO     | aborting loop
[2026-02-04 17:09:32] 2026-02-04 08:08:41,004 | INFO     | all payload control threads have been joined
[2026-02-04 17:09:32] 2026-02-04 08:08:41,470 | INFO     | all data control threads have been joined
[2026-02-04 17:09:32] 2026-02-04 08:08:41,506 | INFO     | [job] queue monitor thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:41,506 | INFO     | [job] retrieve thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:41,507 | INFO     | [job] job monitor thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:41,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 17:09:32] 2026-02-04 08:08:41,691 | INFO     | [payload] validate_post thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:41,702 | INFO     | [data] copytool_in thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:41,713 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:41,718 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:41,858 | INFO     | all job control threads have been joined
[2026-02-04 17:09:32] 2026-02-04 08:08:42,009 | INFO     | [payload] control thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:42,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 17:09:32] 2026-02-04 08:08:42,315 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:42,475 | INFO     | [data] control thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:42,788 | INFO     | [job] validate thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:42,863 | INFO     | [job] control thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:42,902 | INFO     | [payload] failed_post thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:42,903 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:43,690 | INFO     | [data] copytool_out thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:08:46,267 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 17:09:32] 2026-02-04 08:09:09,989 | INFO     | PID=3992133 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 17:09:32] 2026-02-04 08:09:09,989 | INFO     | .. there are 2 such processes running
[2026-02-04 17:09:32] 2026-02-04 08:09:09,989 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 17:09:32] 2026-02-04 08:09:09,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 17:09:32] 2026-02-04 08:09:09,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 17:09:32] 2026-02-04 08:09:25,682 | INFO     | [monitor] cgroup control has ended
[2026-02-04 17:09:32] 2026-02-04 08:09:27,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939316041536)>', '<ExcThread(monitor, started 139938943194880)>']
[2026-02-04 17:09:32] 2026-02-04 08:09:27,071 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 17:09:32] 2026-02-04 08:09:27,071 | INFO     | [monitor] control thread has ended
[2026-02-04 17:09:32] 2026-02-04 08:09:32,042 | INFO     | all workflow threads have been joined
[2026-02-04 17:09:32] 2026-02-04 08:09:32,042 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 17:09:32] 2026-02-04 08:09:32,042 | INFO     | traces error code: 0
[2026-02-04 17:09:32] 2026-02-04 08:09:32,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 17:09:32] 2026-02-04 08:09:32,141 [wrapper] ==== pilot stdout END ====
[2026-02-04 17:09:32] 2026-02-04 08:09:32,144 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 17:09:32] 2026-02-04 08:09:32,146 [wrapper] pilotpid: 3992133
[2026-02-04 17:09:32] 2026-02-04 08:09:32,148 [wrapper] Pilot exit status: 0
[2026-02-04 17:09:32] 2026-02-04 08:09:32,157 [wrapper] pandaids: 7000476744
[2026-02-04 17:09:32] 2026-02-04 08:09:32,187 [wrapper] cleanup supervisor_pilot 4001847 3992134
[2026-02-04 17:09:32] 2026-02-04 08:09:32,189 [wrapper] Test setup, not cleaning
[2026-02-04 17:09:32] 2026-02-04 08:09:32,192 [wrapper] apfmon messages muted
[2026-02-04 17:09:32] 2026-02-04 08:09:32,194 [wrapper] ==== wrapper stdout END ====
[2026-02-04 17:09:32] 2026-02-04 08:09:32,197 [wrapper] ==== wrapper stderr END ====
[2026-02-04 17:09:32]  *** Error codes and diagnostics ***
[2026-02-04 17:09:32]     "exeErrorCode": 0,
[2026-02-04 17:09:32]     "exeErrorDiag": "",
[2026-02-04 17:09:32]     "pilotErrorCode": 0,
[2026-02-04 17:09:32]     "pilotErrorDiag": "",
[2026-02-04 17:09:32]  *** Listing of results directory ***
[2026-02-04 17:09:32] total 667172
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc    584422 Feb  4 08:41 pilot3.tar.gz
[2026-02-04 17:09:32] -rwx------. 1 boinc boinc     36322 Feb  4 08:41 runpilot2-wrapper.sh
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc      5111 Feb  4 08:42 queuedata.json
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc       100 Feb  4 15:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 17:09:32] -rwxr-xr-x. 1 boinc boinc      7986 Feb  4 15:11 run_atlas
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc       105 Feb  4 15:11 job.xml
[2026-02-04 17:09:32] -rw-r--r--. 2 boinc boinc 491448534 Feb  4 15:11 EVNT.48317889._000277.pool.root.1
[2026-02-04 17:09:32] -rw-r--r--. 2 boinc boinc     15845 Feb  4 15:11 start_atlas.sh
[2026-02-04 17:09:32] drwxrwx--x. 2 boinc boinc        68 Feb  4 15:11 shared
[2026-02-04 17:09:32] -rw-r--r--. 2 boinc boinc    597746 Feb  4 15:11 input.tar.gz
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc         0 Feb  4 15:11 boinc_lockfile
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc      2522 Feb  4 15:12 pandaJob.out
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc   1009236 Feb  4 15:13 agis_schedconf.cvmfs.json
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc   1511668 Feb  4 15:13 agis_ddmendpoints.agis.ALL.json
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc       424 Feb  4 15:13 workernode_map.json
[2026-02-04 17:09:32] drwx------. 5 boinc boinc      4096 Feb  4 15:13 pilot3
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc      9361 Feb  4 15:25 init_data.xml
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc 185139373 Feb  4 17:08 HITS.48317892._014442.pool.root.1
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc        95 Feb  4 17:08 pilot_heartbeat.json
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc       530 Feb  4 17:08 boinc_task_state.xml
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc      1019 Feb  4 17:08 memory_monitor_summary.json
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc    321547 Feb  4 17:08 log.48317892._014442.job.log.tgz.1
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc      6302 Feb  4 17:08 heartbeat.json
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc      8192 Feb  4 17:09 boinc_mmap_file
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc        27 Feb  4 17:09 wrapper_checkpoint.txt
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc      4819 Feb  4 17:09 pilotlog.txt
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc   1008618 Feb  4 17:09 log.48317892._014442.job.log.1
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc       357 Feb  4 17:09 output.list
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc       620 Feb  4 17:09 runtime_log
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc   1351680 Feb  4 17:09 result.tar.gz
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc      8774 Feb  4 17:09 runtime_log.err
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc       642 Feb  4 17:09 kzIMDmlCf78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmZ6VKDm28ujlm.diag
[2026-02-04 17:09:32] -rw-r--r--. 1 boinc boinc     20819 Feb  4 17:09 stderr.txt
[2026-02-04 17:09:32] HITS file was successfully produced:
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc 185139373 Feb  4 17:08 shared/HITS.pool.root.1
[2026-02-04 17:09:32]  *** Contents of shared directory: ***
[2026-02-04 17:09:32] total 662656
[2026-02-04 17:09:32] -rw-r--r--. 2 boinc boinc 491448534 Feb  4 15:11 ATLAS.root_0
[2026-02-04 17:09:32] -rw-r--r--. 2 boinc boinc     15845 Feb  4 15:11 start_atlas.sh
[2026-02-04 17:09:32] -rw-r--r--. 2 boinc boinc    597746 Feb  4 15:11 input.tar.gz
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc 185139373 Feb  4 17:08 HITS.pool.root.1
[2026-02-04 17:09:32] -rw-------. 1 boinc boinc   1351680 Feb  4 17:09 result.tar.gz
17:09:33 (3988012): run_atlas exited; CPU time 38644.943879
17:09:33 (3988012): called boinc_finish(0)

</stderr_txt>
]]>

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