Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:24:15 (4009216): wrapper (7.7.26015): starting
07:24:15 (4009216): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 07:24:15] Arguments: --nthreads 4
[2026-02-04 07:24:15] Threads: 4
[2026-02-04 07:24:15] Checking for CVMFS
[2026-02-04 07:24:15] No cvmfs_config command found, will try listing directly
[2026-02-04 07:24:15] CVMFS is ok
[2026-02-04 07:24:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 07:24:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 07:24:15] Further information can be found at the LHC@home message board.
[2026-02-04 07:24:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 07:24:15] Checking for apptainer binary...
[2026-02-04 07:24:15] which: no apptainer in ((null))
[2026-02-04 07:24:15] apptainer is not installed, using version from CVMFS
[2026-02-04 07:24:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 07:24:15] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2026-02-04 07:24:15] apptainer works
[2026-02-04 07:24:15] Set ATHENA_PROC_NUMBER=4
[2026-02-04 07:24:15] Set ATHENA_CORE_NUMBER=4
[2026-02-04 07:24:15] Starting ATLAS job with PandaID=7000476730
[2026-02-04 07:24:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 11:23:40]  *** The last 200 lines of the pilot log: ***
[2026-02-04 11:23:40] 2026-02-04 09:52:46,194 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 11:23:40] 2026-02-04 09:52:46,194 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 11:23:40] 2026-02-04 09:52:46,195 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 11:23:40] 2026-02-04 09:52:46,195 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 11:23:40] 2026-02-04 09:52:46,199 | INFO     | fitting pss+swap vs Time
[2026-02-04 11:23:40] 2026-02-04 09:52:46,199 | INFO     | sum of square deviations: 2671343110.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,200 | INFO     | sum of deviations: -9708545524.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,200 | INFO     | mean x: 1770192515.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,201 | INFO     | mean y: 2326558.6829268294
[2026-02-04 11:23:40] 2026-02-04 09:52:46,201 | INFO     | intersect: 6435792388.5820875
[2026-02-04 11:23:40] 2026-02-04 09:52:46,201 | INFO     | chi2: 2.0431060965663397
[2026-02-04 11:23:40] 2026-02-04 09:52:46,201 | INFO     | sum of square deviations: 2480604650.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,203 | INFO     | sum of deviations: 3276351845.999996
[2026-02-04 11:23:40] 2026-02-04 09:52:46,203 | INFO     | mean x: 1770192362.5
[2026-02-04 11:23:40] 2026-02-04 09:52:46,203 | INFO     | mean y: 2336738.27
[2026-02-04 11:23:40] 2026-02-04 09:52:46,203 | INFO     | intersect: -2335711372.1582255
[2026-02-04 11:23:40] 2026-02-04 09:52:46,203 | INFO     | chi2: 1.250312601844277
[2026-02-04 11:23:40] 2026-02-04 09:52:46,203 | INFO     | current chi2=1.250312601844277 (change=38.80334438110864 %)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,204 | INFO     | sum of square deviations: 2299168690.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,205 | INFO     | sum of deviations: 3236237697.000003
[2026-02-04 11:23:40] 2026-02-04 09:52:46,205 | INFO     | mean x: 1770192210.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,205 | INFO     | mean y: 2336704.5025641024
[2026-02-04 11:23:40] 2026-02-04 09:52:46,205 | INFO     | intersect: -2489330299.251626
[2026-02-04 11:23:40] 2026-02-04 09:52:46,205 | INFO     | chi2: 1.2506310094071986
[2026-02-04 11:23:40] 2026-02-04 09:52:46,205 | INFO     | current chi2=1.2506310094071986 (change=-0.025466236399761658 %)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,206 | INFO     | right removable region: 194
[2026-02-04 11:23:40] 2026-02-04 09:52:46,206 | INFO     | sum of square deviations: 2480604650.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,207 | INFO     | sum of deviations: -30937878191.000008
[2026-02-04 11:23:40] 2026-02-04 09:52:46,207 | INFO     | mean x: 1770192667.5
[2026-02-04 11:23:40] 2026-02-04 09:52:46,208 | INFO     | mean y: 2343253.12
[2026-02-04 11:23:40] 2026-02-04 09:52:46,208 | INFO     | intersect: 22080027063.684643
[2026-02-04 11:23:40] 2026-02-04 09:52:46,208 | INFO     | chi2: 0.8538992178189145
[2026-02-04 11:23:40] 2026-02-04 09:52:46,208 | INFO     | current chi2=0.8538992178189145 (change=58.20583085460004 %)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,209 | INFO     | sum of square deviations: 2299168690.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,210 | INFO     | sum of deviations: -27437112164.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,210 | INFO     | mean x: 1770192820.0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,210 | INFO     | mean y: 2340308.9846153846
[2026-02-04 11:23:40] 2026-02-04 09:52:46,210 | INFO     | intersect: 21126922931.170315
[2026-02-04 11:23:40] 2026-02-04 09:52:46,210 | INFO     | chi2: 0.850824038811631
[2026-02-04 11:23:40] 2026-02-04 09:52:46,211 | INFO     | current chi2=0.850824038811631 (change=0.3601337187236586 %)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,211 | INFO     | left removable region: 20
[2026-02-04 11:23:40] 2026-02-04 09:52:46,211 | INFO     | sum of square deviations: 1633472487.5
[2026-02-04 11:23:40] 2026-02-04 09:52:46,212 | INFO     | sum of deviations: -7299163711.499998
[2026-02-04 11:23:40] 2026-02-04 09:52:46,212 | INFO     | mean x: 1770192789.5
[2026-02-04 11:23:40] 2026-02-04 09:52:46,212 | INFO     | mean y: 2344759.2126436783
[2026-02-04 11:23:40] 2026-02-04 09:52:46,212 | INFO     | intersect: 7912442462.328904
[2026-02-04 11:23:40] 2026-02-04 09:52:46,213 | INFO     | chi2: 0.021167574704527733
[2026-02-04 11:23:40] 2026-02-04 09:52:46,213 | INFO     | current memory leak: -4.47 B/s (using 174 data points, chi2=0.02)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,213 | INFO     | could have reported an average CPU frequency of 2685 MHz (10 samples)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,213 | INFO     | ..............................
[2026-02-04 11:23:40] 2026-02-04 09:52:46,213 | INFO     | . Timing measurements:
[2026-02-04 11:23:40] 2026-02-04 09:52:46,213 | INFO     | . get job = 0 s
[2026-02-04 11:23:40] 2026-02-04 09:52:46,214 | INFO     | . initial setup = 6 s
[2026-02-04 11:23:40] 2026-02-04 09:52:46,214 | INFO     | . payload setup = 5 s
[2026-02-04 11:23:40] 2026-02-04 09:52:46,214 | INFO     | . stage-in = 0 s
[2026-02-04 11:23:40] 2026-02-04 09:52:46,214 | INFO     | . payload execution = 12469 s
[2026-02-04 11:23:40] 2026-02-04 09:52:46,214 | INFO     | . stage-out = 1 s
[2026-02-04 11:23:40] 2026-02-04 09:52:46,214 | INFO     | . log creation = 0 s
[2026-02-04 11:23:40] 2026-02-04 09:52:46,214 | INFO     | ..............................
[2026-02-04 11:23:40] 2026-02-04 09:52:46,384 | INFO     | number of running child processes to parent process 4017956: 1
[2026-02-04 11:23:40] 2026-02-04 09:52:46,384 | INFO     | maximum number of monitored processes: 6
[2026-02-04 11:23:40] 2026-02-04 09:52:46,384 | INFO     | aborting job monitoring since job object (job id=7000476730) has expired
[2026-02-04 11:23:40] 2026-02-04 09:52:46,389 | INFO     | time since job start (12495s) is within the limit (349056.0s)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,389 | INFO     | 12501s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-04 11:23:40] 2026-02-04 09:52:46,727 | INFO     | 
[2026-02-04 11:23:40] 2026-02-04 09:52:46,727 | INFO     | job summary report
[2026-02-04 11:23:40] 2026-02-04 09:52:46,727 | INFO     | --------------------------------------------------
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | PanDA job id: 7000476730
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | task id: 48317892
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | errors: (none)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | pilot state: finished 
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | transexitcode: 0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | exeerrorcode: 0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | exeerrordiag: 
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | exitcode: 0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | exitmsg: OK
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | cpuconsumptiontime: 46606 s
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | nevents: 400
[2026-02-04 11:23:40] 2026-02-04 09:52:46,728 | INFO     | neventsw: 0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,729 | INFO     | pid: 4017956
[2026-02-04 11:23:40] 2026-02-04 09:52:46,729 | INFO     | pgrp: 4017956
[2026-02-04 11:23:40] 2026-02-04 09:52:46,729 | INFO     | corecount: 4
[2026-02-04 11:23:40] 2026-02-04 09:52:46,729 | INFO     | event service: False
[2026-02-04 11:23:40] 2026-02-04 09:52:46,729 | INFO     | sizes: {0: 2277974, 1: 2278236, 11: 2278264, 12479: 2308317, 12480: 2317393, 12483: 2317531}
[2026-02-04 11:23:40] 2026-02-04 09:52:46,729 | INFO     | --------------------------------------------------
[2026-02-04 11:23:40] 2026-02-04 09:52:46,729 | INFO     | 
[2026-02-04 11:23:40] 2026-02-04 09:52:46,729 | INFO     | executing command: ls -lF /scratch/boinc/var/slot44/slots/0
[2026-02-04 11:23:40] 2026-02-04 09:52:46,756 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,757 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,757 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,757 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,758 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,758 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,758 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,758 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,758 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,758 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,759 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,759 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,759 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 11:23:40] 2026-02-04 09:52:46,760 | INFO     | job 7000476730 has completed (purged errors)
[2026-02-04 11:23:40] 2026-02-04 09:52:46,760 | INFO     | overall cleanup function is called
[2026-02-04 11:23:40] 2026-02-04 09:52:47,769 | INFO     | --- collectZombieJob: --- 10, [4017956]
[2026-02-04 11:23:40] 2026-02-04 09:52:47,770 | INFO     | zombie collector waiting for pid 4017956
[2026-02-04 11:23:40] 2026-02-04 09:52:47,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 11:23:40] 2026-02-04 09:52:47,770 | INFO     | collected zombie processes
[2026-02-04 11:23:40] 2026-02-04 09:52:47,770 | INFO     | will attempt to kill all subprocesses of pid=4017956
[2026-02-04 11:23:40] 2026-02-04 09:52:48,047 | INFO     | PID=4013224 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-04 11:23:40] 2026-02-04 09:52:48,047 | INFO     | .. there are 8 such processes running
[2026-02-04 11:23:40] 2026-02-04 09:52:48,305 | INFO     | process IDs to be killed: [4017956] (in reverse order)
[2026-02-04 11:23:40] 2026-02-04 09:52:48,417 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 11:23:40] 2026-02-04 09:52:48,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 11:23:40] 2026-02-04 09:52:48,430 | INFO     | did not find any defunct processes belonging to 4017956
[2026-02-04 11:23:40] 2026-02-04 09:52:48,442 | INFO     | did not find any defunct processes belonging to 4017956
[2026-02-04 11:23:40] 2026-02-04 09:52:48,443 | INFO     | ready for new job
[2026-02-04 11:23:40] 2026-02-04 09:52:48,443 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 11:23:40] 2026-02-04 09:52:48,445 | INFO     | **************************************
[2026-02-04 11:23:40] 2026-02-04 09:52:48,446 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 11:23:40] 2026-02-04 09:52:48,446 | INFO     | **************************************
[2026-02-04 11:23:40] 2026-02-04 09:52:48,446 | INFO     | 
[2026-02-04 11:23:40] 2026-02-04 09:52:48,450 | INFO     | architecture information:
[2026-02-04 11:23:40] 2026-02-04 09:52:48,451 | INFO     | executing command: cat /etc/os-release
[2026-02-04 11:23:40] 2026-02-04 09:52:48,466 | INFO     | cat /etc/os-release:
[2026-02-04 11:23:40] NAME="CentOS Linux"
[2026-02-04 11:23:40] VERSION="7 (Core)"
[2026-02-04 11:23:40] ID="centos"
[2026-02-04 11:23:40] ID_LIKE="rhel fedora"
[2026-02-04 11:23:40] VERSION_ID="7"
[2026-02-04 11:23:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 11:23:40] ANSI_COLOR="0;31"
[2026-02-04 11:23:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 11:23:40] HOME_URL="https://www.centos.org/"
[2026-02-04 11:23:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 11:23:40] 
[2026-02-04 11:23:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 11:23:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 11:23:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 11:23:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 11:23:40] 
[2026-02-04 11:23:40] 2026-02-04 09:52:48,467 | INFO     | **************************************
[2026-02-04 11:23:40] 2026-02-04 09:52:48,969 | INFO     | executing command: df -mP /scratch/boinc/var/slot44/slots/0
[2026-02-04 11:23:40] 2026-02-04 09:52:48,986 | INFO     | sufficient remaining disk space (620250529792 B)
[2026-02-04 11:23:40] 2026-02-04 09:52:48,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 11:23:40] 2026-02-04 09:52:48,987 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 11:23:40] 2026-02-04 09:52:48,987 | INFO     | update_server=False
[2026-02-04 11:23:40] 2026-02-04 09:52:48,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 11:23:40] 2026-02-04 09:52:48,987 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-04 11:23:40] 2026-02-04 09:52:48,988 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 11:23:40] 2026-02-04 09:52:48,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 11:23:40] 2026-02-04 09:52:48,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 11:23:40] 2026-02-04 09:52:48,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 11:23:40] 2026-02-04 09:52:49,024 | INFO     | all data control threads have been joined
[2026-02-04 11:23:40] 2026-02-04 09:52:49,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 11:23:40] 2026-02-04 09:52:49,424 | INFO     | all job control threads have been joined
[2026-02-04 11:23:40] 2026-02-04 09:52:49,721 | INFO     | all payload control threads have been joined
[2026-02-04 11:23:40] 2026-02-04 09:52:49,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 11:23:40] 2026-02-04 09:52:49,893 | INFO     | aborting loop
[2026-02-04 11:23:40] 2026-02-04 09:52:49,992 | INFO     | [job] retrieve thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,027 | INFO     | [data] control thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,086 | INFO     | [payload] failed_post thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,242 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,429 | INFO     | [job] control thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,466 | INFO     | [data] copytool_in thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,470 | INFO     | [job] validate thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,727 | INFO     | [payload] control thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,794 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,802 | INFO     | [payload] validate_post thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,867 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,897 | INFO     | [job] job monitor thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,898 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:50,993 | INFO     | [data] copytool_out thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:51,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 11:23:40] 2026-02-04 09:52:51,875 | INFO     | [monitor] cgroup control has ended
[2026-02-04 11:23:40] 2026-02-04 09:52:52,333 | INFO     | [job] queue monitor thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:53,313 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 11:23:40] 2026-02-04 09:52:54,042 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23383904921408)>', '<ExcThread(monitor, started 23383667652352)>']
[2026-02-04 11:23:40] 2026-02-04 09:52:55,017 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 11:23:40] 2026-02-04 09:52:55,017 | INFO     | [monitor] control thread has ended
[2026-02-04 11:23:40] 2026-02-04 09:52:59,067 | INFO     | all workflow threads have been joined
[2026-02-04 11:23:40] 2026-02-04 09:52:59,067 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 11:23:40] 2026-02-04 09:52:59,068 | INFO     | traces error code: 0
[2026-02-04 11:23:40] 2026-02-04 09:52:59,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 11:23:40] 2026-02-04 09:52:59,196 [wrapper] ==== pilot stdout END ====
[2026-02-04 11:23:40] 2026-02-04 09:52:59,199 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 11:23:40] 2026-02-04 09:52:59,202 [wrapper] pilotpid: 4013224
[2026-02-04 11:23:40] 2026-02-04 09:52:59,204 [wrapper] Pilot exit status: 0
[2026-02-04 11:23:40] 2026-02-04 09:52:59,215 [wrapper] pandaids: 7000476730
[2026-02-04 11:23:40] 2026-02-04 09:52:59,284 [wrapper] cleanup supervisor_pilot 4188890 4013225
[2026-02-04 11:23:40] 2026-02-04 09:52:59,287 [wrapper] Test setup, not cleaning
[2026-02-04 11:23:40] 2026-02-04 09:52:59,290 [wrapper] apfmon messages muted
[2026-02-04 11:23:40] 2026-02-04 09:52:59,293 [wrapper] ==== wrapper stdout END ====
[2026-02-04 11:23:40] 2026-02-04 09:52:59,296 [wrapper] ==== wrapper stderr END ====
[2026-02-04 11:23:40]  *** Error codes and diagnostics ***
[2026-02-04 11:23:40]     "exeErrorCode": 0,
[2026-02-04 11:23:40]     "exeErrorDiag": "",
[2026-02-04 11:23:40]     "pilotErrorCode": 0,
[2026-02-04 11:23:40]     "pilotErrorDiag": "",
[2026-02-04 11:23:40]  *** Listing of results directory ***
[2026-02-04 11:23:40] total 674008
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc    584422 Feb  4 00:41 pilot3.tar.gz
[2026-02-04 11:23:40] -rwx------ 1 boinc boinc     36322 Feb  4 00:41 runpilot2-wrapper.sh
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc      5111 Feb  4 00:42 queuedata.json
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc       100 Feb  4 07:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 11:23:40] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 07:24 run_atlas
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc       105 Feb  4 07:24 job.xml
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc      6637 Feb  4 07:24 init_data.xml
[2026-02-04 11:23:40] -rw-r--r-- 2 boinc boinc 496028827 Feb  4 07:24 EVNT.48317889._000276.pool.root.1
[2026-02-04 11:23:40] -rw-r--r-- 2 boinc boinc    597758 Feb  4 07:24 input.tar.gz
[2026-02-04 11:23:40] -rw-r--r-- 2 boinc boinc     15845 Feb  4 07:24 start_atlas.sh
[2026-02-04 11:23:40] drwxrwx--x 2 boinc boinc      4096 Feb  4 07:24 shared
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc         0 Feb  4 07:24 boinc_lockfile
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc      2523 Feb  4 07:24 pandaJob.out
[2026-02-04 11:23:40] -rw------- 1 boinc boinc   1009228 Feb  4 07:24 agis_schedconf.cvmfs.json
[2026-02-04 11:23:40] -rw------- 1 boinc boinc       444 Feb  4 07:24 workernode_map.json
[2026-02-04 11:23:40] drwx------ 5 boinc boinc      4096 Feb  4 07:24 pilot3
[2026-02-04 11:23:40] -rw------- 1 boinc boinc 185868200 Feb  4 10:52 HITS.48317892._014428.pool.root.1
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc       530 Feb  4 10:52 boinc_task_state.xml
[2026-02-04 11:23:40] -rw------- 1 boinc boinc        95 Feb  4 10:52 pilot_heartbeat.json
[2026-02-04 11:23:40] -rw------- 1 boinc boinc      1049 Feb  4 10:52 memory_monitor_summary.json
[2026-02-04 11:23:40] -rw------- 1 boinc boinc   1511668 Feb  4 10:52 agis_ddmendpoints.agis.ALL.json
[2026-02-04 11:23:40] -rw------- 1 boinc boinc    413624 Feb  4 10:52 log.48317892._014428.job.log.tgz.1
[2026-02-04 11:23:40] -rw------- 1 boinc boinc      6401 Feb  4 10:52 heartbeat.json
[2026-02-04 11:23:40] -rw------- 1 boinc boinc      4558 Feb  4 10:52 pilotlog.txt
[2026-02-04 11:23:40] -rw------- 1 boinc boinc   1761329 Feb  4 10:52 log.48317892._014428.job.log.1
[2026-02-04 11:23:40] -rw------- 1 boinc boinc       357 Feb  4 10:52 output.list
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc       620 Feb  4 10:52 runtime_log
[2026-02-04 11:23:40] -rw------- 1 boinc boinc   2191360 Feb  4 10:52 result.tar.gz
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc      9205 Feb  4 10:52 runtime_log.err
[2026-02-04 11:23:40] -rw------- 1 boinc boinc       665 Feb  4 10:52 O6BMDmlCf78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmT6VKDmOBFZDo.diag
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc        27 Feb  4 11:23 wrapper_checkpoint.txt
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc      8192 Feb  4 11:23 boinc_mmap_file
[2026-02-04 11:23:40] -rw-r--r-- 1 boinc boinc     20859 Feb  4 11:23 stderr.txt
[2026-02-04 11:23:40] HITS file was successfully produced:
[2026-02-04 11:23:40] -rw------- 1 boinc boinc 185868200 Feb  4 10:52 shared/HITS.pool.root.1
[2026-02-04 11:23:40]  *** Contents of shared directory: ***
[2026-02-04 11:23:40] total 668664
[2026-02-04 11:23:40] -rw-r--r-- 2 boinc boinc 496028827 Feb  4 07:24 ATLAS.root_0
[2026-02-04 11:23:40] -rw-r--r-- 2 boinc boinc    597758 Feb  4 07:24 input.tar.gz
[2026-02-04 11:23:40] -rw-r--r-- 2 boinc boinc     15845 Feb  4 07:24 start_atlas.sh
[2026-02-04 11:23:40] -rw------- 1 boinc boinc 185868200 Feb  4 10:52 HITS.pool.root.1
[2026-02-04 11:23:40] -rw------- 1 boinc boinc   2191360 Feb  4 10:52 result.tar.gz
11:23:42 (4009216): run_atlas exited; CPU time 47114.723984
11:23:42 (4009216): called boinc_finish(0)

</stderr_txt>
]]>

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