Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:46:08 (3055243): wrapper (7.7.26015): starting
15:46:08 (3055243): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 15:46:08] Arguments: --nthreads 4
[2026-02-04 15:46:08] Threads: 4
[2026-02-04 15:46:08] Checking for CVMFS
[2026-02-04 15:46:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 15:46:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 15:46:09] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 15:46:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 15:46:09] 2.9.2.0 1058158 10051 96656 155866 1 188 35893595 36864001 0 130560 0 5681993 99.988 335784 7426 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 15:46:09] CVMFS is ok
[2026-02-04 15:46:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 15:46:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 15:46:09] Further information can be found at the LHC@home message board.
[2026-02-04 15:46:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 15:46:09] Checking for apptainer binary...
[2026-02-04 15:46:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 15:46:09] Running /usr/bin/apptainer --version
[2026-02-04 15:46:09] apptainer version 1.4.1-1.1
[2026-02-04 15:46:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 15:46:09] thA315b
[2026-02-04 15:46:09] apptainer works
[2026-02-04 15:46:09] Set ATHENA_PROC_NUMBER=4
[2026-02-04 15:46:09] Set ATHENA_CORE_NUMBER=4
[2026-02-04 15:46:09] Starting ATLAS job with PandaID=6994524214
[2026-02-04 15:46:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 16:47:30]  *** The last 200 lines of the pilot log: ***
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | job 6994524214 has completed (purged errors)
[2026-02-04 16:47:30] 2026-02-04 15:46:59,160 | INFO     | overall cleanup function is called
[2026-02-04 16:47:30] 2026-02-04 15:47:00,167 | INFO     | --- collectZombieJob: --- 10, [3063852]
[2026-02-04 16:47:30] 2026-02-04 15:47:00,167 | INFO     | zombie collector waiting for pid 3063852
[2026-02-04 16:47:30] 2026-02-04 15:47:00,167 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 16:47:30] 2026-02-04 15:47:00,167 | INFO     | collected zombie processes
[2026-02-04 16:47:30] 2026-02-04 15:47:00,167 | INFO     | will attempt to kill all subprocesses of pid=3063852
[2026-02-04 16:47:30] 2026-02-04 15:47:00,212 | INFO     | process IDs to be killed: [3063852] (in reverse order)
[2026-02-04 16:47:30] 2026-02-04 15:47:00,240 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 16:47:30] 2026-02-04 15:47:00,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 16:47:30] 2026-02-04 15:47:00,242 | INFO     | did not find any defunct processes belonging to 3063852
[2026-02-04 16:47:30] 2026-02-04 15:47:00,243 | INFO     | did not find any defunct processes belonging to 3063852
[2026-02-04 16:47:30] 2026-02-04 15:47:00,243 | INFO     | ready for new job
[2026-02-04 16:47:30] 2026-02-04 15:47:00,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 16:47:30] 2026-02-04 15:47:00,244 | INFO     | **************************************
[2026-02-04 16:47:30] 2026-02-04 15:47:00,244 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 16:47:30] 2026-02-04 15:47:00,244 | INFO     | **************************************
[2026-02-04 16:47:30] 2026-02-04 15:47:00,244 | INFO     | 
[2026-02-04 16:47:30] 2026-02-04 15:47:00,244 | INFO     | architecture information:
[2026-02-04 16:47:30] 2026-02-04 15:47:00,244 | INFO     | executing command: cat /etc/os-release
[2026-02-04 16:47:30] 2026-02-04 15:47:00,255 | INFO     | cat /etc/os-release:
[2026-02-04 16:47:30] NAME="CentOS Linux"
[2026-02-04 16:47:30] VERSION="7 (Core)"
[2026-02-04 16:47:30] ID="centos"
[2026-02-04 16:47:30] ID_LIKE="rhel fedora"
[2026-02-04 16:47:30] VERSION_ID="7"
[2026-02-04 16:47:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 16:47:30] ANSI_COLOR="0;31"
[2026-02-04 16:47:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 16:47:30] HOME_URL="https://www.centos.org/"
[2026-02-04 16:47:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 16:47:30] 
[2026-02-04 16:47:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 16:47:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 16:47:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 16:47:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 16:47:30] 
[2026-02-04 16:47:30] 2026-02-04 15:47:00,255 | INFO     | **************************************
[2026-02-04 16:47:30] 2026-02-04 15:47:00,758 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 16:47:30] 2026-02-04 15:47:00,772 | INFO     | sufficient remaining disk space (324495474688 B)
[2026-02-04 16:47:30] 2026-02-04 15:47:00,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 16:47:30] 2026-02-04 15:47:00,772 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 16:47:30] 2026-02-04 15:47:00,772 | INFO     | update_server=False
[2026-02-04 16:47:30] 2026-02-04 15:47:00,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 16:47:30] 2026-02-04 15:47:00,773 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 16:47:30] 2026-02-04 15:47:00,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 16:47:30] 2026-02-04 15:47:00,773 | INFO     | aborting loop
[2026-02-04 16:47:30] 2026-02-04 15:47:00,914 | INFO     | all data control threads have been joined
[2026-02-04 16:47:30] 2026-02-04 15:47:01,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 16:47:30] 2026-02-04 15:47:01,778 | INFO     | [job] retrieve thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:01,779 | INFO     | [job] job monitor thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:01,870 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:01,920 | INFO     | [data] control thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:01,986 | INFO     | [data] copytool_in thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:02,112 | INFO     | all payload control threads have been joined
[2026-02-04 16:47:30] 2026-02-04 15:47:02,129 | INFO     | all job control threads have been joined
[2026-02-04 16:47:30] 2026-02-04 15:47:02,164 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:02,188 | INFO     | [payload] validate_post thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:02,608 | INFO     | [payload] failed_post thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:02,779 | INFO     | [data] copytool_out thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:03,062 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:03,118 | INFO     | [payload] control thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:03,135 | INFO     | [job] control thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:03,216 | INFO     | [job] validate thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:03,265 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:03,723 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 16:47:30] 2026-02-04 15:47:04,729 | INFO     | [job] queue monitor thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:05,700 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 16:47:30] 2026-02-04 15:47:24,308 | INFO     | [monitor] cgroup control has ended
[2026-02-04 16:47:30] 2026-02-04 15:47:25,427 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122532669248)>', '<ExcThread(monitor, started 140121890350848)>']
[2026-02-04 16:47:30] 2026-02-04 15:47:30,437 | INFO     | all workflow threads have been joined
[2026-02-04 16:47:30] 2026-02-04 15:47:30,437 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 16:47:30] 2026-02-04 15:47:30,437 | INFO     | traces error code: 0
[2026-02-04 16:47:30] 2026-02-04 15:47:30,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 16:47:30] 2026-02-04 15:47:30,507 | INFO     | PID=3059352 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 16:47:30] 2026-02-04 15:47:30,507 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 16:47:30] 2026-02-04 15:47:30,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 16:47:30] 2026-02-04 15:47:30,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 16:47:30] 2026-02-04 15:47:30,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 16:47:30] 2026-02-04 15:47:30,507 | INFO     | [monitor] control thread has ended
[2026-02-04 16:47:30] 2026-02-04 15:47:30,555 [wrapper] ==== pilot stdout END ====
[2026-02-04 16:47:30] 2026-02-04 15:47:30,558 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 16:47:30] 2026-02-04 15:47:30,561 [wrapper] pilotpid: 3059352
[2026-02-04 16:47:30] 2026-02-04 15:47:30,563 [wrapper] Pilot exit status: 0
[2026-02-04 16:47:30] 2026-02-04 15:47:30,571 [wrapper] pandaids: 6994524214
[2026-02-04 16:47:30] 2026-02-04 15:47:30,589 [wrapper] cleanup supervisor_pilot 3068726 3059353
[2026-02-04 16:47:30] 2026-02-04 15:47:30,592 [wrapper] Test setup, not cleaning
[2026-02-04 16:47:30] 2026-02-04 15:47:30,594 [wrapper] apfmon messages muted
[2026-02-04 16:47:30] 2026-02-04 15:47:30,597 [wrapper] ==== wrapper stdout END ====
[2026-02-04 16:47:30] 2026-02-04 15:47:30,599 [wrapper] ==== wrapper stderr END ====
[2026-02-04 16:47:30]  *** Error codes and diagnostics ***
[2026-02-04 16:47:30]     "exeErrorCode": 0,
[2026-02-04 16:47:30]     "exeErrorDiag": "",
[2026-02-04 16:47:30]     "pilotErrorCode": 0,
[2026-02-04 16:47:30]     "pilotErrorDiag": "",
[2026-02-04 16:47:30]  *** Listing of results directory ***
[2026-02-04 16:47:30] total 662564
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc    584422 Feb  3 22:59 pilot3.tar.gz
[2026-02-04 16:47:30] -rwx------ 1 boinc boinc     36322 Feb  3 23:00 runpilot2-wrapper.sh
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc      5111 Feb  3 23:03 queuedata.json
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc       100 Feb  4 15:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 16:47:30] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 15:46 run_atlas
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc       105 Feb  4 15:46 job.xml
[2026-02-04 16:47:30] -rw-r--r-- 2 boinc boinc 495248710 Feb  4 15:46 EVNT.48318008._000059.pool.root.1
[2026-02-04 16:47:30] -rw-r--r-- 2 boinc boinc    597771 Feb  4 15:46 input.tar.gz
[2026-02-04 16:47:30] -rw-r--r-- 2 boinc boinc     15845 Feb  4 15:46 start_atlas.sh
[2026-02-04 16:47:30] drwxrwx--x 2 boinc boinc      4096 Feb  4 15:46 shared
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc         0 Feb  4 15:46 boinc_setup_complete
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc      6443 Feb  4 15:46 init_data.xml
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc         0 Feb  4 15:46 boinc_lockfile
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc      2526 Feb  4 15:46 pandaJob.out
[2026-02-04 16:47:30] -rw------- 1 boinc boinc   1009228 Feb  4 15:46 agis_schedconf.cvmfs.json
[2026-02-04 16:47:30] -rw------- 1 boinc boinc   1511668 Feb  4 15:46 agis_ddmendpoints.agis.ALL.json
[2026-02-04 16:47:30] -rw------- 1 boinc boinc       418 Feb  4 15:46 workernode_map.json
[2026-02-04 16:47:30] drwx------ 5 boinc boinc      4096 Feb  4 15:46 pilot3
[2026-02-04 16:47:30] -rw------- 1 boinc boinc 177647425 Feb  4 16:46 HITS.48318010._008663.pool.root.1
[2026-02-04 16:47:30] -rw------- 1 boinc boinc        95 Feb  4 16:46 pilot_heartbeat.json
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc       530 Feb  4 16:46 boinc_task_state.xml
[2026-02-04 16:47:30] -rw------- 1 boinc boinc      1011 Feb  4 16:46 memory_monitor_summary.json
[2026-02-04 16:47:30] -rw------- 1 boinc boinc    278528 Feb  4 16:46 log.48318010._008663.job.log.tgz.1
[2026-02-04 16:47:30] -rw------- 1 boinc boinc      6287 Feb  4 16:46 heartbeat.json
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc        27 Feb  4 16:47 wrapper_checkpoint.txt
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc      8192 Feb  4 16:47 boinc_mmap_file
[2026-02-04 16:47:30] -rw------- 1 boinc boinc       747 Feb  4 16:47 pilotlog.txt
[2026-02-04 16:47:30] -rw------- 1 boinc boinc    547761 Feb  4 16:47 log.48318010._008663.job.log.1
[2026-02-04 16:47:30] -rw------- 1 boinc boinc       357 Feb  4 16:47 output.list
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc       620 Feb  4 16:47 runtime_log
[2026-02-04 16:47:30] -rw------- 1 boinc boinc    839680 Feb  4 16:47 result.tar.gz
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc      8901 Feb  4 16:47 runtime_log.err
[2026-02-04 16:47:30] -rw------- 1 boinc boinc       658 Feb  4 16:47 fWmMDmpcd78n9Rq4apOajLDm4fhM0noT9bVooX4SDm3dVKDmj4MnLm.diag
[2026-02-04 16:47:30] -rw-r--r-- 1 boinc boinc     12034 Feb  4 16:47 stderr.txt
[2026-02-04 16:47:30] HITS file was successfully produced:
[2026-02-04 16:47:30] -rw------- 1 boinc boinc 177647425 Feb  4 16:46 shared/HITS.pool.root.1
[2026-02-04 16:47:30]  *** Contents of shared directory: ***
[2026-02-04 16:47:30] total 658556
[2026-02-04 16:47:30] -rw-r--r-- 2 boinc boinc 495248710 Feb  4 15:46 ATLAS.root_0
[2026-02-04 16:47:30] -rw-r--r-- 2 boinc boinc    597771 Feb  4 15:46 input.tar.gz
[2026-02-04 16:47:30] -rw-r--r-- 2 boinc boinc     15845 Feb  4 15:46 start_atlas.sh
[2026-02-04 16:47:30] -rw------- 1 boinc boinc 177647425 Feb  4 16:46 HITS.pool.root.1
[2026-02-04 16:47:30] -rw------- 1 boinc boinc    839680 Feb  4 16:47 result.tar.gz
16:47:32 (3055243): run_atlas exited; CPU time 13674.035215
16:47:32 (3055243): called boinc_finish(0)

</stderr_txt>
]]>

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