Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:48:35 (3519625): wrapper (7.7.26015): starting
04:48:35 (3519625): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 04:48:35] Arguments: --nthreads 4
[2026-02-04 04:48:35] Threads: 4
[2026-02-04 04:48:35] Checking for CVMFS
[2026-02-04 04:48:35] No cvmfs_config command found, will try listing directly
[2026-02-04 04:48:35] CVMFS is ok
[2026-02-04 04:48:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 04:48:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 04:48:35] Further information can be found at the LHC@home message board.
[2026-02-04 04:48:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 04:48:35] Checking for apptainer binary...
[2026-02-04 04:48:35] which: no apptainer in ((null))
[2026-02-04 04:48:35] apptainer is not installed, using version from CVMFS
[2026-02-04 04:48:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 04:48:35] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-02-04 04:48:35] apptainer works
[2026-02-04 04:48:35] Set ATHENA_PROC_NUMBER=4
[2026-02-04 04:48:35] Set ATHENA_CORE_NUMBER=4
[2026-02-04 04:48:35] Starting ATLAS job with PandaID=7000585974
[2026-02-04 04:48:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 06:55:14]  *** The last 200 lines of the pilot log: ***
[2026-02-04 06:55:14] 2026-02-04 05:54:26,875 | INFO     | job 7000585974 has state=finished
[2026-02-04 06:55:14] 2026-02-04 05:54:26,876 | INFO     | preparing for final server update for job 7000585974 in state='finished'
[2026-02-04 06:55:14] 2026-02-04 05:54:26,876 | INFO     | reading metadata from: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-7000585974/jobReport.json
[2026-02-04 06:55:14] 2026-02-04 05:54:26,877 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot32/slots/0/workernode_map.json
[2026-02-04 06:55:14] 2026-02-04 05:54:26,878 | INFO     | this job has now completed (state=finished)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,878 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,878 | INFO     | log transfer has been attempted: DONE
[2026-02-04 06:55:14] 2026-02-04 05:54:26,878 | INFO     | job 7000585974 has finished - writing final server update
[2026-02-04 06:55:14] 2026-02-04 05:54:26,878 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2568314/.job.ad'
[2026-02-04 06:55:14] 2026-02-04 05:54:26,878 | INFO     | total number of processed events: 400 (read)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,892 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-7000585974/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,892 | INFO     | extracted standard info from prmon json
[2026-02-04 06:55:14] 2026-02-04 05:54:26,892 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 06:55:14] 2026-02-04 05:54:26,892 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 06:55:14] 2026-02-04 05:54:26,892 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 06:55:14] 2026-02-04 05:54:26,892 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 06:55:14] 2026-02-04 05:54:26,894 | INFO     | fitting pss+swap vs Time
[2026-02-04 06:55:14] 2026-02-04 05:54:26,894 | INFO     | sum of square deviations: 576985702.0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,894 | INFO     | sum of deviations: 15071971134.0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,894 | INFO     | mean x: 1770180685.0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | mean y: 2298788.9837398375
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | intersect: -46238209587.22615
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | chi2: 1.3406459534696025
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | sum of square deviations: 509440249.5
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | sum of deviations: 14340482344.5
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | mean x: 1770180532.5
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | mean y: 2297136.9576271186
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | intersect: -49827379057.27457
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | chi2: 1.3425670648416228
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | current chi2=1.3425670648416228 (change=-0.1432974430757414 %)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,895 | INFO     | right removable region: 117
[2026-02-04 06:55:14] 2026-02-04 05:54:26,896 | INFO     | sum of square deviations: 509440249.5
[2026-02-04 06:55:14] 2026-02-04 05:54:26,896 | INFO     | sum of deviations: -494413296.0000002
[2026-02-04 06:55:14] 2026-02-04 05:54:26,896 | INFO     | mean x: 1770180837.5
[2026-02-04 06:55:14] 2026-02-04 05:54:26,896 | INFO     | mean y: 2333212.5084745763
[2026-02-04 06:55:14] 2026-02-04 05:54:26,896 | INFO     | intersect: 1720299045.0931566
[2026-02-04 06:55:14] 2026-02-04 05:54:26,896 | INFO     | chi2: 0.004257341860488756
[2026-02-04 06:55:14] 2026-02-04 05:54:26,896 | INFO     | current chi2=0.004257341860488756 (change=99.68244100170736 %)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,896 | INFO     | sum of square deviations: 447383272.0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | sum of deviations: -401142405.0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | mean x: 1770180990.0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | mean y: 2332974.920353982
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | intersect: 1589550700.8747587
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | chi2: 0.004179783070297943
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | current chi2=0.004179783070297943 (change=1.821765616489842 %)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | left removable region: 20
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | sum of square deviations: 282974608.0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | sum of deviations: 543074216.0000001
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | mean x: 1770181112.0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | mean y: 2329394.5154639175
[2026-02-04 06:55:14] 2026-02-04 05:54:26,897 | INFO     | intersect: -3394935562.8315516
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | chi2: 0.001908817577111706
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | current memory leak: 1.92 B/s (using 97 data points, chi2=0.00)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | could have reported an average CPU frequency of 2713 MHz (8 samples)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | ..............................
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | . Timing measurements:
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | . get job = 0 s
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | . initial setup = 8 s
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | . payload setup = 8 s
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | . stage-in = 0 s
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | . payload execution = 7502 s
[2026-02-04 06:55:14] 2026-02-04 05:54:26,898 | INFO     | . stage-out = 0 s
[2026-02-04 06:55:14] 2026-02-04 05:54:26,900 | INFO     | . log creation = 0 s
[2026-02-04 06:55:14] 2026-02-04 05:54:26,900 | INFO     | ..............................
[2026-02-04 06:55:14] 2026-02-04 05:54:26,953 | INFO     | 
[2026-02-04 06:55:14] 2026-02-04 05:54:26,953 | INFO     | job summary report
[2026-02-04 06:55:14] 2026-02-04 05:54:26,953 | INFO     | --------------------------------------------------
[2026-02-04 06:55:14] 2026-02-04 05:54:26,953 | INFO     | PanDA job id: 7000585974
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | task id: 48317952
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | errors: (none)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | pilot state: finished 
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | transexitcode: 0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | exeerrorcode: 0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | exeerrordiag: 
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | exitcode: 0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | exitmsg: OK
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | cpuconsumptiontime: 28654 s
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | nevents: 400
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | neventsw: 0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | pid: 3528990
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | pgrp: 3528990
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | corecount: 4
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | event service: False
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | sizes: {0: 2277852, 1: 2278313, 11: 2278313, 7514: 2305894, 7515: 2314914, 7516: 2314970, 7518: 2315292}
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | --------------------------------------------------
[2026-02-04 06:55:14] 2026-02-04 05:54:26,954 | INFO     | 
[2026-02-04 06:55:14] 2026-02-04 05:54:26,955 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2026-02-04 06:55:14] 2026-02-04 05:54:26,973 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,974 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | job 7000585974 has completed (purged errors)
[2026-02-04 06:55:14] 2026-02-04 05:54:26,975 | INFO     | overall cleanup function is called
[2026-02-04 06:55:14] 2026-02-04 05:54:27,984 | INFO     | --- collectZombieJob: --- 10, [3528990]
[2026-02-04 06:55:14] 2026-02-04 05:54:27,984 | INFO     | zombie collector waiting for pid 3528990
[2026-02-04 06:55:14] 2026-02-04 05:54:27,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 06:55:14] 2026-02-04 05:54:27,985 | INFO     | collected zombie processes
[2026-02-04 06:55:14] 2026-02-04 05:54:27,985 | INFO     | will attempt to kill all subprocesses of pid=3528990
[2026-02-04 06:55:14] 2026-02-04 05:54:28,305 | INFO     | process IDs to be killed: [3528990] (in reverse order)
[2026-02-04 06:55:14] 2026-02-04 05:54:28,429 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 06:55:14] 2026-02-04 05:54:28,429 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 06:55:14] 2026-02-04 05:54:28,443 | INFO     | did not find any defunct processes belonging to 3528990
[2026-02-04 06:55:14] 2026-02-04 05:54:28,454 | INFO     | did not find any defunct processes belonging to 3528990
[2026-02-04 06:55:14] 2026-02-04 05:54:28,454 | INFO     | ready for new job
[2026-02-04 06:55:14] 2026-02-04 05:54:28,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 06:55:14] 2026-02-04 05:54:28,456 | INFO     | **************************************
[2026-02-04 06:55:14] 2026-02-04 05:54:28,456 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 06:55:14] 2026-02-04 05:54:28,456 | INFO     | **************************************
[2026-02-04 06:55:14] 2026-02-04 05:54:28,456 | INFO     | 
[2026-02-04 06:55:14] 2026-02-04 05:54:28,462 | INFO     | architecture information:
[2026-02-04 06:55:14] 2026-02-04 05:54:28,462 | INFO     | executing command: cat /etc/os-release
[2026-02-04 06:55:14] 2026-02-04 05:54:28,481 | INFO     | cat /etc/os-release:
[2026-02-04 06:55:14] NAME="CentOS Linux"
[2026-02-04 06:55:14] VERSION="7 (Core)"
[2026-02-04 06:55:14] ID="centos"
[2026-02-04 06:55:14] ID_LIKE="rhel fedora"
[2026-02-04 06:55:14] VERSION_ID="7"
[2026-02-04 06:55:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 06:55:14] ANSI_COLOR="0;31"
[2026-02-04 06:55:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 06:55:14] HOME_URL="https://www.centos.org/"
[2026-02-04 06:55:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 06:55:14] 
[2026-02-04 06:55:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 06:55:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 06:55:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 06:55:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 06:55:14] 
[2026-02-04 06:55:14] 2026-02-04 05:54:28,481 | INFO     | **************************************
[2026-02-04 06:55:14] 2026-02-04 05:54:28,984 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2026-02-04 06:55:14] 2026-02-04 05:54:29,003 | INFO     | sufficient remaining disk space (3238228131840 B)
[2026-02-04 06:55:14] 2026-02-04 05:54:29,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 06:55:14] 2026-02-04 05:54:29,003 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 06:55:14] 2026-02-04 05:54:29,004 | INFO     | update_server=False
[2026-02-04 06:55:14] 2026-02-04 05:54:29,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 06:55:14] 2026-02-04 05:54:29,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 06:55:14] 2026-02-04 05:54:29,004 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 06:55:14] 2026-02-04 05:54:29,005 | INFO     | aborting loop
[2026-02-04 06:55:14] 2026-02-04 05:54:29,420 | INFO     | job.realtimelogging is not enabled
[2026-02-04 06:55:14] 2026-02-04 05:54:29,571 | INFO     | all data control threads have been joined
[2026-02-04 06:55:14] 2026-02-04 05:54:30,009 | INFO     | [job] job monitor thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:30,009 | INFO     | [job] retrieve thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:30,043 | INFO     | [data] copytool_in thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:30,061 | INFO     | all job control threads have been joined
[2026-02-04 06:55:14] 2026-02-04 05:54:30,282 | INFO     | [payload] validate_post thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:30,398 | INFO     | all payload control threads have been joined
[2026-02-04 06:55:14] 2026-02-04 05:54:30,426 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:30,577 | INFO     | [data] control thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:30,781 | INFO     | [job] validate thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:30,926 | INFO     | [payload] failed_post thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:30,943 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:31,010 | INFO     | [data] copytool_out thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:31,067 | INFO     | [job] control thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:31,146 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:31,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 06:55:14] 2026-02-04 05:54:31,320 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:31,403 | INFO     | [payload] control thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:31,964 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 06:55:14] 2026-02-04 05:54:32,969 | INFO     | [job] queue monitor thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:54:35,289 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 06:55:14] 2026-02-04 05:55:00,287 | INFO     | PID=3523824 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 06:55:14] 2026-02-04 05:55:00,288 | INFO     | .. there are 8 such processes running
[2026-02-04 06:55:14] 2026-02-04 05:55:00,288 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 06:55:14] 2026-02-04 05:55:00,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 06:55:14] 2026-02-04 05:55:00,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 06:55:14] 2026-02-04 05:55:08,082 | INFO     | [monitor] cgroup control has ended
[2026-02-04 06:55:14] 2026-02-04 05:55:08,748 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22572190201664)>', '<ExcThread(monitor, started 22571948185344)>']
[2026-02-04 06:55:14] 2026-02-04 05:55:09,333 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 06:55:14] 2026-02-04 05:55:09,334 | INFO     | [monitor] control thread has ended
[2026-02-04 06:55:14] 2026-02-04 05:55:13,769 | INFO     | all workflow threads have been joined
[2026-02-04 06:55:14] 2026-02-04 05:55:13,770 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 06:55:14] 2026-02-04 05:55:13,770 | INFO     | traces error code: 0
[2026-02-04 06:55:14] 2026-02-04 05:55:13,770 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 06:55:14] 2026-02-04 05:55:13,865 [wrapper] ==== pilot stdout END ====
[2026-02-04 06:55:14] 2026-02-04 05:55:13,868 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 06:55:14] 2026-02-04 05:55:13,870 [wrapper] pilotpid: 3523824
[2026-02-04 06:55:14] 2026-02-04 05:55:13,873 [wrapper] Pilot exit status: 0
[2026-02-04 06:55:14] 2026-02-04 05:55:13,883 [wrapper] pandaids: 7000585974
[2026-02-04 06:55:14] 2026-02-04 05:55:13,956 [wrapper] cleanup supervisor_pilot 3703899 3523825
[2026-02-04 06:55:14] 2026-02-04 05:55:13,960 [wrapper] Test setup, not cleaning
[2026-02-04 06:55:14] 2026-02-04 05:55:13,963 [wrapper] apfmon messages muted
[2026-02-04 06:55:14] 2026-02-04 05:55:13,965 [wrapper] ==== wrapper stdout END ====
[2026-02-04 06:55:14] 2026-02-04 05:55:13,968 [wrapper] ==== wrapper stderr END ====
[2026-02-04 06:55:14]  *** Error codes and diagnostics ***
[2026-02-04 06:55:14]     "exeErrorCode": 0,
[2026-02-04 06:55:14]     "exeErrorDiag": "",
[2026-02-04 06:55:14]     "pilotErrorCode": 0,
[2026-02-04 06:55:14]     "pilotErrorDiag": "",
[2026-02-04 06:55:14]  *** Listing of results directory ***
[2026-02-04 06:55:14] total 671572
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc    584422 Feb  4 02:26 pilot3.tar.gz
[2026-02-04 06:55:14] -rwx------ 1 boinc boinc     36322 Feb  4 02:28 runpilot2-wrapper.sh
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc      5111 Feb  4 02:29 queuedata.json
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc       100 Feb  4 04:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 06:55:14] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 04:48 run_atlas
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc       105 Feb  4 04:48 job.xml
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc      6687 Feb  4 04:48 init_data.xml
[2026-02-04 06:55:14] -rw-r--r-- 2 boinc boinc 495929880 Feb  4 04:48 EVNT.48317949._000229.pool.root.1
[2026-02-04 06:55:14] -rw-r--r-- 2 boinc boinc    597759 Feb  4 04:48 input.tar.gz
[2026-02-04 06:55:14] -rw-r--r-- 2 boinc boinc     15845 Feb  4 04:48 start_atlas.sh
[2026-02-04 06:55:14] drwxrwx--x 2 boinc boinc      4096 Feb  4 04:48 shared
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc         0 Feb  4 04:48 boinc_lockfile
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc      2523 Feb  4 04:48 pandaJob.out
[2026-02-04 06:55:14] -rw------- 1 boinc boinc   1009244 Feb  4 04:48 agis_schedconf.cvmfs.json
[2026-02-04 06:55:14] -rw------- 1 boinc boinc   1511668 Feb  4 04:48 agis_ddmendpoints.agis.ALL.json
[2026-02-04 06:55:14] -rw------- 1 boinc boinc       440 Feb  4 04:48 workernode_map.json
[2026-02-04 06:55:14] drwx------ 5 boinc boinc      4096 Feb  4 04:48 pilot3
[2026-02-04 06:55:14] -rw------- 1 boinc boinc 185045366 Feb  4 06:53 HITS.48317952._012127.pool.root.1
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc       530 Feb  4 06:54 boinc_task_state.xml
[2026-02-04 06:55:14] -rw------- 1 boinc boinc      1030 Feb  4 06:54 memory_monitor_summary.json
[2026-02-04 06:55:14] -rw------- 1 boinc boinc    314130 Feb  4 06:54 log.48317952._012127.job.log.tgz.1
[2026-02-04 06:55:14] -rw------- 1 boinc boinc      6344 Feb  4 06:54 heartbeat.json
[2026-02-04 06:55:14] -rw------- 1 boinc boinc        95 Feb  4 06:55 pilot_heartbeat.json
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc        27 Feb  4 06:55 wrapper_checkpoint.txt
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc      8192 Feb  4 06:55 boinc_mmap_file
[2026-02-04 06:55:14] -rw------- 1 boinc boinc      4902 Feb  4 06:55 pilotlog.txt
[2026-02-04 06:55:14] -rw------- 1 boinc boinc   1070758 Feb  4 06:55 log.48317952._012127.job.log.1
[2026-02-04 06:55:14] -rw------- 1 boinc boinc       357 Feb  4 06:55 output.list
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc       620 Feb  4 06:55 runtime_log
[2026-02-04 06:55:14] -rw------- 1 boinc boinc   1402880 Feb  4 06:55 result.tar.gz
[2026-02-04 06:55:14] -rw------- 1 boinc boinc       662 Feb  4 06:55 xixKDm5rg78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVMWKDmqAEprm.diag
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc      9204 Feb  4 06:55 runtime_log.err
[2026-02-04 06:55:14] -rw-r--r-- 1 boinc boinc     21098 Feb  4 06:55 stderr.txt
[2026-02-04 06:55:14] HITS file was successfully produced:
[2026-02-04 06:55:14] -rw------- 1 boinc boinc 185045366 Feb  4 06:53 shared/HITS.pool.root.1
[2026-02-04 06:55:14]  *** Contents of shared directory: ***
[2026-02-04 06:55:14] total 667000
[2026-02-04 06:55:14] -rw-r--r-- 2 boinc boinc 495929880 Feb  4 04:48 ATLAS.root_0
[2026-02-04 06:55:14] -rw-r--r-- 2 boinc boinc    597759 Feb  4 04:48 input.tar.gz
[2026-02-04 06:55:14] -rw-r--r-- 2 boinc boinc     15845 Feb  4 04:48 start_atlas.sh
[2026-02-04 06:55:14] -rw------- 1 boinc boinc 185045366 Feb  4 06:53 HITS.pool.root.1
[2026-02-04 06:55:14] -rw------- 1 boinc boinc   1402880 Feb  4 06:55 result.tar.gz
06:55:15 (3519625): run_atlas exited; CPU time 29041.551354
06:55:15 (3519625): called boinc_finish(0)

</stderr_txt>
]]>

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