Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:37:44 (2439055): wrapper (7.7.26015): starting
01:37:44 (2439055): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 01:37:44] Arguments: --nthreads 4
[2026-02-04 01:37:44] Threads: 4
[2026-02-04 01:37:44] Checking for CVMFS
[2026-02-04 01:37:44] No cvmfs_config command found, will try listing directly
[2026-02-04 01:37:44] CVMFS is ok
[2026-02-04 01:37:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 01:37:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 01:37:44] Further information can be found at the LHC@home message board.
[2026-02-04 01:37:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 01:37:44] Checking for apptainer binary...
[2026-02-04 01:37:44] which: no apptainer in ((null))
[2026-02-04 01:37:44] apptainer is not installed, using version from CVMFS
[2026-02-04 01:37:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 01:37:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-02-04 01:37:44] apptainer works
[2026-02-04 01:37:45] Set ATHENA_PROC_NUMBER=4
[2026-02-04 01:37:45] Set ATHENA_CORE_NUMBER=4
[2026-02-04 01:37:45] Starting ATLAS job with PandaID=6994435151
[2026-02-04 01:37:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 04:33:28]  *** The last 200 lines of the pilot log: ***
[2026-02-04 04:33:28] 2026-02-04 03:32:32,269 | INFO     | preparing for final server update for job 6994435151 in state='finished'
[2026-02-04 04:33:28] 2026-02-04 03:32:32,269 | INFO     | reading metadata from: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6994435151/jobReport.json
[2026-02-04 04:33:28] 2026-02-04 03:32:32,273 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot56/slots/0/workernode_map.json
[2026-02-04 04:33:28] 2026-02-04 03:32:32,273 | INFO     | this job has now completed (state=finished)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,273 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,273 | INFO     | log transfer has been attempted: DONE
[2026-02-04 04:33:28] 2026-02-04 03:32:32,274 | INFO     | job 6994435151 has finished - writing final server update
[2026-02-04 04:33:28] 2026-02-04 03:32:32,274 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1764582/.job.ad'
[2026-02-04 04:33:28] 2026-02-04 03:32:32,274 | INFO     | total number of processed events: 400 (read)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,304 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6994435151/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,305 | INFO     | extracted standard info from prmon json
[2026-02-04 04:33:28] 2026-02-04 03:32:32,305 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 04:33:28] 2026-02-04 03:32:32,305 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 04:33:28] 2026-02-04 03:32:32,305 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 04:33:28] 2026-02-04 03:32:32,306 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 04:33:28] 2026-02-04 03:32:32,309 | INFO     | fitting pss+swap vs Time
[2026-02-04 04:33:28] 2026-02-04 03:32:32,309 | INFO     | sum of square deviations: 1550429070.0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,310 | INFO     | sum of deviations: 15004908954.000002
[2026-02-04 04:33:28] 2026-02-04 03:32:32,311 | INFO     | mean x: 1770170699.0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,311 | INFO     | mean y: 2317450.397660819
[2026-02-04 04:33:28] 2026-02-04 03:32:32,311 | INFO     | intersect: -17129230638.760357
[2026-02-04 04:33:28] 2026-02-04 03:32:32,311 | INFO     | chi2: 1.3169833602244554
[2026-02-04 04:33:28] 2026-02-04 03:32:32,311 | INFO     | sum of square deviations: 1418361477.5
[2026-02-04 04:33:28] 2026-02-04 03:32:32,312 | INFO     | sum of deviations: 14560274189.500004
[2026-02-04 04:33:28] 2026-02-04 03:32:32,312 | INFO     | mean x: 1770170546.5
[2026-02-04 04:33:28] 2026-02-04 03:32:32,313 | INFO     | mean y: 2316936.825301205
[2026-02-04 04:33:28] 2026-02-04 03:32:32,313 | INFO     | intersect: -18169474195.46528
[2026-02-04 04:33:28] 2026-02-04 03:32:32,313 | INFO     | chi2: 1.3180871508520224
[2026-02-04 04:33:28] 2026-02-04 03:32:32,313 | INFO     | current chi2=1.3180871508520224 (change=-0.08381204052410553 %)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,313 | INFO     | right removable region: 165
[2026-02-04 04:33:28] 2026-02-04 03:32:32,314 | INFO     | sum of square deviations: 1418361477.5
[2026-02-04 04:33:28] 2026-02-04 03:32:32,314 | INFO     | sum of deviations: -5934432061.499999
[2026-02-04 04:33:28] 2026-02-04 03:32:32,315 | INFO     | mean x: 1770170851.5
[2026-02-04 04:33:28] 2026-02-04 03:32:32,315 | INFO     | mean y: 2341247.620481928
[2026-02-04 04:33:28] 2026-02-04 03:32:32,315 | INFO     | intersect: 7408745624.867363
[2026-02-04 04:33:28] 2026-02-04 03:32:32,315 | INFO     | chi2: 0.007560778729206868
[2026-02-04 04:33:28] 2026-02-04 03:32:32,315 | INFO     | current chi2=0.007560778729206868 (change=99.42590172681314 %)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,316 | INFO     | sum of square deviations: 1294014960.0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,317 | INFO     | sum of deviations: -5229721905.999999
[2026-02-04 04:33:28] 2026-02-04 03:32:32,317 | INFO     | mean x: 1770171004.0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,317 | INFO     | mean y: 2340372.204968944
[2026-02-04 04:33:28] 2026-02-04 03:32:32,317 | INFO     | intersect: 7156432375.117217
[2026-02-04 04:33:28] 2026-02-04 03:32:32,317 | INFO     | chi2: 0.006912223839178263
[2026-02-04 04:33:28] 2026-02-04 03:32:32,317 | INFO     | current chi2=0.006912223839178263 (change=8.577884808654352 %)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,317 | INFO     | left removable region: 20
[2026-02-04 04:33:28] 2026-02-04 03:32:32,318 | INFO     | sum of square deviations: 945282840.0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,318 | INFO     | sum of deviations: -2886719592.000002
[2026-02-04 04:33:28] 2026-02-04 03:32:32,319 | INFO     | mean x: 1770171126.0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,319 | INFO     | mean y: 2337433.9103448275
[2026-02-04 04:33:28] 2026-02-04 03:32:32,319 | INFO     | intersect: 5408113836.893503
[2026-02-04 04:33:28] 2026-02-04 03:32:32,319 | INFO     | chi2: 0.004980610070765731
[2026-02-04 04:33:28] 2026-02-04 03:32:32,319 | INFO     | current memory leak: -3.05 B/s (using 145 data points, chi2=0.00)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | could have reported an average CPU frequency of 2698 MHz (9 samples)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | ..............................
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | . Timing measurements:
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | . get job = 0 s
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | . initial setup = 8 s
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | . payload setup = 8 s
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | . stage-in = 0 s
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | . payload execution = 10438 s
[2026-02-04 04:33:28] 2026-02-04 03:32:32,320 | INFO     | . stage-out = 0 s
[2026-02-04 04:33:28] 2026-02-04 03:32:32,321 | INFO     | . log creation = 0 s
[2026-02-04 04:33:28] 2026-02-04 03:32:32,321 | INFO     | ..............................
[2026-02-04 04:33:28] 2026-02-04 03:32:32,563 | INFO     | 
[2026-02-04 04:33:28] 2026-02-04 03:32:32,563 | INFO     | job summary report
[2026-02-04 04:33:28] 2026-02-04 03:32:32,563 | INFO     | --------------------------------------------------
[2026-02-04 04:33:28] 2026-02-04 03:32:32,563 | INFO     | PanDA job id: 6994435151
[2026-02-04 04:33:28] 2026-02-04 03:32:32,563 | INFO     | task id: 48318042
[2026-02-04 04:33:28] 2026-02-04 03:32:32,563 | INFO     | errors: (none)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,563 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | pilot state: finished 
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | transexitcode: 0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | exeerrorcode: 0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | exeerrordiag: 
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | exitcode: 0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | exitmsg: OK
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | cpuconsumptiontime: 39959 s
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | nevents: 400
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | neventsw: 0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | pid: 2458597
[2026-02-04 04:33:28] 2026-02-04 03:32:32,564 | INFO     | pgrp: 2458597
[2026-02-04 04:33:28] 2026-02-04 03:32:32,565 | INFO     | corecount: 4
[2026-02-04 04:33:28] 2026-02-04 03:32:32,565 | INFO     | event service: False
[2026-02-04 04:33:28] 2026-02-04 03:32:32,565 | INFO     | sizes: {0: 2278035, 1: 2278325, 11: 2278325, 10450: 2307571, 10453: 2316647, 10455: 2316849}
[2026-02-04 04:33:28] 2026-02-04 03:32:32,565 | INFO     | --------------------------------------------------
[2026-02-04 04:33:28] 2026-02-04 03:32:32,565 | INFO     | 
[2026-02-04 04:33:28] 2026-02-04 03:32:32,565 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2026-02-04 04:33:28] 2026-02-04 03:32:32,600 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,600 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 04:33:28] 2026-02-04 03:32:32,602 | INFO     | job 6994435151 has completed (purged errors)
[2026-02-04 04:33:28] 2026-02-04 03:32:32,603 | INFO     | overall cleanup function is called
[2026-02-04 04:33:28] 2026-02-04 03:32:32,650 | INFO     | PID=2446597 has CPU usage=19.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-04 04:33:28] 2026-02-04 03:32:32,650 | INFO     | .. there are 23 such processes running
[2026-02-04 04:33:28] 2026-02-04 03:32:33,614 | INFO     | --- collectZombieJob: --- 10, [2458597]
[2026-02-04 04:33:28] 2026-02-04 03:32:33,615 | INFO     | zombie collector waiting for pid 2458597
[2026-02-04 04:33:28] 2026-02-04 03:32:33,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 04:33:28] 2026-02-04 03:32:33,615 | INFO     | collected zombie processes
[2026-02-04 04:33:28] 2026-02-04 03:32:33,615 | INFO     | will attempt to kill all subprocesses of pid=2458597
[2026-02-04 04:33:28] 2026-02-04 03:32:34,166 | INFO     | process IDs to be killed: [2458597] (in reverse order)
[2026-02-04 04:33:28] 2026-02-04 03:32:34,433 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 04:33:28] 2026-02-04 03:32:34,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 04:33:28] 2026-02-04 03:32:34,460 | INFO     | did not find any defunct processes belonging to 2458597
[2026-02-04 04:33:28] 2026-02-04 03:32:34,480 | INFO     | did not find any defunct processes belonging to 2458597
[2026-02-04 04:33:28] 2026-02-04 03:32:34,481 | INFO     | ready for new job
[2026-02-04 04:33:28] 2026-02-04 03:32:34,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 04:33:28] 2026-02-04 03:32:34,483 | INFO     | **************************************
[2026-02-04 04:33:28] 2026-02-04 03:32:34,483 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 04:33:28] 2026-02-04 03:32:34,483 | INFO     | **************************************
[2026-02-04 04:33:28] 2026-02-04 03:32:34,484 | INFO     | 
[2026-02-04 04:33:28] 2026-02-04 03:32:34,492 | INFO     | architecture information:
[2026-02-04 04:33:28] 2026-02-04 03:32:34,493 | INFO     | executing command: cat /etc/os-release
[2026-02-04 04:33:28] 2026-02-04 03:32:34,516 | INFO     | cat /etc/os-release:
[2026-02-04 04:33:28] NAME="CentOS Linux"
[2026-02-04 04:33:28] VERSION="7 (Core)"
[2026-02-04 04:33:28] ID="centos"
[2026-02-04 04:33:28] ID_LIKE="rhel fedora"
[2026-02-04 04:33:28] VERSION_ID="7"
[2026-02-04 04:33:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 04:33:28] ANSI_COLOR="0;31"
[2026-02-04 04:33:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 04:33:28] HOME_URL="https://www.centos.org/"
[2026-02-04 04:33:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 04:33:28] 
[2026-02-04 04:33:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 04:33:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 04:33:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 04:33:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 04:33:28] 
[2026-02-04 04:33:28] 2026-02-04 03:32:34,516 | INFO     | **************************************
[2026-02-04 04:33:28] 2026-02-04 03:32:35,020 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2026-02-04 04:33:28] 2026-02-04 03:32:35,046 | INFO     | sufficient remaining disk space (3257095159808 B)
[2026-02-04 04:33:28] 2026-02-04 03:32:35,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 04:33:28] 2026-02-04 03:32:35,047 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 04:33:28] 2026-02-04 03:32:35,047 | INFO     | update_server=False
[2026-02-04 04:33:28] 2026-02-04 03:32:35,047 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 04:33:28] 2026-02-04 03:32:35,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 04:33:28] 2026-02-04 03:32:35,048 | INFO     | aborting loop
[2026-02-04 04:33:28] 2026-02-04 03:32:35,291 | INFO     | all data control threads have been joined
[2026-02-04 04:33:28] 2026-02-04 03:32:35,783 | INFO     | all job control threads have been joined
[2026-02-04 04:33:28] 2026-02-04 03:32:35,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 04:33:28] 2026-02-04 03:32:36,053 | INFO     | [job] retrieve thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:36,054 | INFO     | [job] job monitor thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:36,248 | INFO     | [payload] failed_post thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:36,297 | INFO     | [data] control thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:36,384 | INFO     | all payload control threads have been joined
[2026-02-04 04:33:28] 2026-02-04 03:32:36,399 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 04:33:28] 2026-02-04 03:32:36,687 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:36,785 | INFO     | [job] control thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:36,787 | INFO     | [job] validate thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:36,828 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:37,274 | INFO     | [payload] validate_post thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:37,346 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:37,390 | INFO     | [payload] control thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:37,424 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 04:33:28] 2026-02-04 03:32:37,426 | INFO     | [data] copytool_in thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:37,448 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:37,816 | INFO     | [data] copytool_out thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:38,430 | INFO     | [job] queue monitor thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:32:40,405 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 04:33:28] 2026-02-04 03:33:05,517 | INFO     | PID=2446597 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 04:33:28] 2026-02-04 03:33:05,517 | INFO     | .. there are 22 such processes running
[2026-02-04 04:33:28] 2026-02-04 03:33:05,517 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 04:33:28] 2026-02-04 03:33:05,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 04:33:28] 2026-02-04 03:33:05,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 04:33:28] 2026-02-04 03:33:22,915 | INFO     | [monitor] cgroup control has ended
[2026-02-04 04:33:28] 2026-02-04 03:33:23,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22709704554304)>', '<ExcThread(monitor, started 22709464737536)>']
[2026-02-04 04:33:28] 2026-02-04 03:33:23,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 04:33:28] 2026-02-04 03:33:23,605 | INFO     | [monitor] control thread has ended
[2026-02-04 04:33:28] 2026-02-04 03:33:28,307 | INFO     | all workflow threads have been joined
[2026-02-04 04:33:28] 2026-02-04 03:33:28,308 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 04:33:28] 2026-02-04 03:33:28,308 | INFO     | traces error code: 0
[2026-02-04 04:33:28] 2026-02-04 03:33:28,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 04:33:28] 2026-02-04 03:33:28,441 [wrapper] ==== pilot stdout END ====
[2026-02-04 04:33:28] 2026-02-04 03:33:28,445 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 04:33:28] 2026-02-04 03:33:28,450 [wrapper] pilotpid: 2446597
[2026-02-04 04:33:28] 2026-02-04 03:33:28,453 [wrapper] Pilot exit status: 0
[2026-02-04 04:33:28] 2026-02-04 03:33:28,467 [wrapper] pandaids: 6994435151
[2026-02-04 04:33:28] 2026-02-04 03:33:28,612 [wrapper] cleanup supervisor_pilot 2862857 2446598
[2026-02-04 04:33:28] 2026-02-04 03:33:28,616 [wrapper] Test setup, not cleaning
[2026-02-04 04:33:28] 2026-02-04 03:33:28,621 [wrapper] apfmon messages muted
[2026-02-04 04:33:28] 2026-02-04 03:33:28,625 [wrapper] ==== wrapper stdout END ====
[2026-02-04 04:33:28] 2026-02-04 03:33:28,630 [wrapper] ==== wrapper stderr END ====
[2026-02-04 04:33:28]  *** Error codes and diagnostics ***
[2026-02-04 04:33:28]     "exeErrorCode": 0,
[2026-02-04 04:33:28]     "exeErrorDiag": "",
[2026-02-04 04:33:28]     "pilotErrorCode": 0,
[2026-02-04 04:33:28]     "pilotErrorDiag": "",
[2026-02-04 04:33:28]  *** Listing of results directory ***
[2026-02-04 04:33:28] total 680412
[2026-02-04 04:33:28] -rwx------ 1 boinc boinc     36322 Feb  3 21:02 runpilot2-wrapper.sh
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc      5111 Feb  3 21:04 queuedata.json
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc    584422 Feb  3 21:04 pilot3.tar.gz
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc       100 Feb  4 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 04:33:28] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 01:37 run_atlas
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc       105 Feb  4 01:37 job.xml
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc      6687 Feb  4 01:37 init_data.xml
[2026-02-04 04:33:28] -rw-r--r-- 2 boinc boinc 500898101 Feb  4 01:37 EVNT.48318040._000167.pool.root.1
[2026-02-04 04:33:28] -rw-r--r-- 2 boinc boinc     15845 Feb  4 01:37 start_atlas.sh
[2026-02-04 04:33:28] drwxrwx--x 2 boinc boinc      4096 Feb  4 01:37 shared
[2026-02-04 04:33:28] -rw-r--r-- 2 boinc boinc    597765 Feb  4 01:37 input.tar.gz
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc         0 Feb  4 01:37 boinc_lockfile
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc      2536 Feb  4 01:37 pandaJob.out
[2026-02-04 04:33:28] -rw------- 1 boinc boinc   1009228 Feb  4 01:37 agis_schedconf.cvmfs.json
[2026-02-04 04:33:28] -rw------- 1 boinc boinc   1511668 Feb  4 01:37 agis_ddmendpoints.agis.ALL.json
[2026-02-04 04:33:28] -rw------- 1 boinc boinc       443 Feb  4 01:38 workernode_map.json
[2026-02-04 04:33:28] drwx------ 5 boinc boinc      4096 Feb  4 01:38 pilot3
[2026-02-04 04:33:28] -rw------- 1 boinc boinc 188183315 Feb  4 04:31 HITS.48318042._008618.pool.root.1
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc       530 Feb  4 04:31 boinc_task_state.xml
[2026-02-04 04:33:28] -rw------- 1 boinc boinc        95 Feb  4 04:32 pilot_heartbeat.json
[2026-02-04 04:33:28] -rw------- 1 boinc boinc      1032 Feb  4 04:32 memory_monitor_summary.json
[2026-02-04 04:33:28] -rw------- 1 boinc boinc    385875 Feb  4 04:32 log.48318042._008618.job.log.tgz.1
[2026-02-04 04:33:28] -rw------- 1 boinc boinc      6357 Feb  4 04:32 heartbeat.json
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc        27 Feb  4 04:33 wrapper_checkpoint.txt
[2026-02-04 04:33:28] -rw------- 1 boinc boinc      4831 Feb  4 04:33 pilotlog.txt
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc      8192 Feb  4 04:33 boinc_mmap_file
[2026-02-04 04:33:28] -rw------- 1 boinc boinc   1472924 Feb  4 04:33 log.48318042._008618.job.log.1
[2026-02-04 04:33:28] -rw------- 1 boinc boinc       357 Feb  4 04:33 output.list
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc       620 Feb  4 04:33 runtime_log
[2026-02-04 04:33:28] -rw------- 1 boinc boinc   1873920 Feb  4 04:33 result.tar.gz
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc      9205 Feb  4 04:33 runtime_log.err
[2026-02-04 04:33:28] -rw------- 1 boinc boinc       664 Feb  4 04:33 omnMDmgmb78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmAqVKDmyqQ2lm.diag
[2026-02-04 04:33:28] -rw-r--r-- 1 boinc boinc     21240 Feb  4 04:33 stderr.txt
[2026-02-04 04:33:28] HITS file was successfully produced:
[2026-02-04 04:33:28] -rw------- 1 boinc boinc 188183315 Feb  4 04:31 shared/HITS.pool.root.1
[2026-02-04 04:33:28]  *** Contents of shared directory: ***
[2026-02-04 04:33:28] total 675376
[2026-02-04 04:33:28] -rw-r--r-- 2 boinc boinc 500898101 Feb  4 01:37 ATLAS.root_0
[2026-02-04 04:33:28] -rw-r--r-- 2 boinc boinc     15845 Feb  4 01:37 start_atlas.sh
[2026-02-04 04:33:28] -rw-r--r-- 2 boinc boinc    597765 Feb  4 01:37 input.tar.gz
[2026-02-04 04:33:28] -rw------- 1 boinc boinc 188183315 Feb  4 04:31 HITS.pool.root.1
[2026-02-04 04:33:28] -rw------- 1 boinc boinc   1873920 Feb  4 04:33 result.tar.gz
04:33:30 (2439055): run_atlas exited; CPU time 40587.881552
04:33:30 (2439055): called boinc_finish(0)

</stderr_txt>
]]>

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