Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:32:28 (2540328): wrapper (7.7.26015): starting
01:32:28 (2540328): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 01:32:28] Arguments: --nthreads 4
[2026-02-04 01:32:28] Threads: 4
[2026-02-04 01:32:28] Checking for CVMFS
[2026-02-04 01:32:28] No cvmfs_config command found, will try listing directly
[2026-02-04 01:32:28] CVMFS is ok
[2026-02-04 01:32:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 01:32:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 01:32:28] Further information can be found at the LHC@home message board.
[2026-02-04 01:32:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 01:32:28] Checking for apptainer binary...
[2026-02-04 01:32:28] which: no apptainer in ((null))
[2026-02-04 01:32:28] apptainer is not installed, using version from CVMFS
[2026-02-04 01:32:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 01:32:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-02-04 01:32:28] apptainer works
[2026-02-04 01:32:28] Set ATHENA_PROC_NUMBER=4
[2026-02-04 01:32:28] Set ATHENA_CORE_NUMBER=4
[2026-02-04 01:32:28] Starting ATLAS job with PandaID=7000019579
[2026-02-04 01:32:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 04:38:15]  *** The last 200 lines of the pilot log: ***
[2026-02-04 04:38:15] 2026-02-04 03:37:19,103 | INFO     | time since job start (11069s) is within the limit (349056.0s)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,312 | INFO     | job 7000019579 has state=finished
[2026-02-04 04:38:15] 2026-02-04 03:37:19,312 | INFO     | preparing for final server update for job 7000019579 in state='finished'
[2026-02-04 04:38:15] 2026-02-04 03:37:19,312 | INFO     | reading metadata from: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-7000019579/jobReport.json
[2026-02-04 04:38:15] 2026-02-04 03:37:19,315 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot52/slots/0/workernode_map.json
[2026-02-04 04:38:15] 2026-02-04 03:37:19,315 | INFO     | this job has now completed (state=finished)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,316 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,316 | INFO     | log transfer has been attempted: DONE
[2026-02-04 04:38:15] 2026-02-04 03:37:19,316 | INFO     | job 7000019579 has finished - writing final server update
[2026-02-04 04:38:15] 2026-02-04 03:37:19,316 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1889808/.job.ad'
[2026-02-04 04:38:15] 2026-02-04 03:37:19,316 | INFO     | total number of processed events: 400 (read)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,341 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-7000019579/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,342 | INFO     | extracted standard info from prmon json
[2026-02-04 04:38:15] 2026-02-04 03:37:19,342 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 04:38:15] 2026-02-04 03:37:19,342 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 04:38:15] 2026-02-04 03:37:19,343 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 04:38:15] 2026-02-04 03:37:19,343 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 04:38:15] 2026-02-04 03:37:19,347 | INFO     | fitting pss+swap vs Time
[2026-02-04 04:38:15] 2026-02-04 03:37:19,347 | INFO     | sum of square deviations: 1838657730.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,348 | INFO     | sum of deviations: 16927173893.999998
[2026-02-04 04:38:15] 2026-02-04 03:37:19,348 | INFO     | mean x: 1770170687.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,349 | INFO     | mean y: 2322170.7127071824
[2026-02-04 04:38:15] 2026-02-04 03:37:19,349 | INFO     | intersect: -16294341722.74094
[2026-02-04 04:38:15] 2026-02-04 03:37:19,349 | INFO     | chi2: 1.292806683504006
[2026-02-04 04:38:15] 2026-02-04 03:37:19,349 | INFO     | sum of square deviations: 1690450300.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,350 | INFO     | sum of deviations: 16493639757.000002
[2026-02-04 04:38:15] 2026-02-04 03:37:19,351 | INFO     | mean x: 1770170534.5
[2026-02-04 04:38:15] 2026-02-04 03:37:19,351 | INFO     | mean y: 2321724.5568181816
[2026-02-04 04:38:15] 2026-02-04 03:37:19,351 | INFO     | intersect: -17269144407.573265
[2026-02-04 04:38:15] 2026-02-04 03:37:19,351 | INFO     | chi2: 1.293736432210747
[2026-02-04 04:38:15] 2026-02-04 03:37:19,351 | INFO     | current chi2=1.293736432210747 (change=-0.07191707148519905 %)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,351 | INFO     | right removable region: 175
[2026-02-04 04:38:15] 2026-02-04 03:37:19,352 | INFO     | sum of square deviations: 1690450300.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,353 | INFO     | sum of deviations: -5089983411.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,353 | INFO     | mean x: 1770170839.5
[2026-02-04 04:38:15] 2026-02-04 03:37:19,353 | INFO     | mean y: 2344477.625
[2026-02-04 04:38:15] 2026-02-04 03:37:19,353 | INFO     | intersect: 5332368204.256267
[2026-02-04 04:38:15] 2026-02-04 03:37:19,353 | INFO     | chi2: 0.004953587746620139
[2026-02-04 04:38:15] 2026-02-04 03:37:19,354 | INFO     | current chi2=0.004953587746620139 (change=99.61683461186988 %)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,354 | INFO     | sum of square deviations: 1550429070.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,355 | INFO     | sum of deviations: -4783629088.999999
[2026-02-04 04:38:15] 2026-02-04 03:37:19,355 | INFO     | mean x: 1770170992.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,355 | INFO     | mean y: 2344143.67251462
[2026-02-04 04:38:15] 2026-02-04 03:37:19,355 | INFO     | intersect: 5463955779.885698
[2026-02-04 04:38:15] 2026-02-04 03:37:19,356 | INFO     | chi2: 0.004933047069334867
[2026-02-04 04:38:15] 2026-02-04 03:37:19,356 | INFO     | current chi2=0.004933047069334867 (change=0.4146626311260279 %)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,356 | INFO     | left removable region: 20
[2026-02-04 04:38:15] 2026-02-04 03:37:19,356 | INFO     | sum of square deviations: 1154663510.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,357 | INFO     | sum of deviations: -3361068340.9999995
[2026-02-04 04:38:15] 2026-02-04 03:37:19,357 | INFO     | mean x: 1770171114.0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,360 | INFO     | mean y: 2342784.5483870967
[2026-02-04 04:38:15] 2026-02-04 03:37:19,360 | INFO     | intersect: 5155069997.187246
[2026-02-04 04:38:15] 2026-02-04 03:37:19,360 | INFO     | chi2: 0.004535620685812282
[2026-02-04 04:38:15] 2026-02-04 03:37:19,361 | INFO     | current memory leak: -2.91 B/s (using 155 data points, chi2=0.00)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,361 | INFO     | could have reported an average CPU frequency of 2672 MHz (10 samples)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,361 | INFO     | ..............................
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | . Timing measurements:
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | . get job = 0 s
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | . initial setup = 7 s
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | . payload setup = 8 s
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | . stage-in = 0 s
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | . payload execution = 11043 s
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | . stage-out = 1 s
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | . log creation = 0 s
[2026-02-04 04:38:15] 2026-02-04 03:37:19,362 | INFO     | ..............................
[2026-02-04 04:38:15] 2026-02-04 03:37:19,950 | INFO     | 
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | job summary report
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | --------------------------------------------------
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | PanDA job id: 7000019579
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | task id: 48317892
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | errors: (none)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | pilot state: finished 
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | transexitcode: 0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | exeerrorcode: 0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | exeerrordiag: 
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | exitcode: 0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | exitmsg: OK
[2026-02-04 04:38:15] 2026-02-04 03:37:19,951 | INFO     | cpuconsumptiontime: 41657 s
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | nevents: 400
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | neventsw: 0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | pid: 2549900
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | pgrp: 2549900
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | corecount: 4
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | event service: False
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | sizes: {0: 2277133, 1: 2278262, 12: 2278262, 11055: 2307788, 11056: 2307787, 11057: 2317047, 11058: 2317185}
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | --------------------------------------------------
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | 
[2026-02-04 04:38:15] 2026-02-04 03:37:19,952 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2026-02-04 04:38:15] 2026-02-04 03:37:19,987 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,988 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | job 7000019579 has completed (purged errors)
[2026-02-04 04:38:15] 2026-02-04 03:37:19,989 | INFO     | overall cleanup function is called
[2026-02-04 04:38:15] 2026-02-04 03:37:20,997 | INFO     | --- collectZombieJob: --- 10, [2549900]
[2026-02-04 04:38:15] 2026-02-04 03:37:20,998 | INFO     | zombie collector waiting for pid 2549900
[2026-02-04 04:38:15] 2026-02-04 03:37:20,998 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 04:38:15] 2026-02-04 03:37:20,998 | INFO     | collected zombie processes
[2026-02-04 04:38:15] 2026-02-04 03:37:20,998 | INFO     | will attempt to kill all subprocesses of pid=2549900
[2026-02-04 04:38:15] 2026-02-04 03:37:21,580 | INFO     | process IDs to be killed: [2549900] (in reverse order)
[2026-02-04 04:38:15] 2026-02-04 03:37:21,821 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 04:38:15] 2026-02-04 03:37:21,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 04:38:15] 2026-02-04 03:37:21,850 | INFO     | did not find any defunct processes belonging to 2549900
[2026-02-04 04:38:15] 2026-02-04 03:37:21,873 | INFO     | did not find any defunct processes belonging to 2549900
[2026-02-04 04:38:15] 2026-02-04 03:37:21,873 | INFO     | ready for new job
[2026-02-04 04:38:15] 2026-02-04 03:37:21,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 04:38:15] 2026-02-04 03:37:21,876 | INFO     | **************************************
[2026-02-04 04:38:15] 2026-02-04 03:37:21,877 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 04:38:15] 2026-02-04 03:37:21,877 | INFO     | **************************************
[2026-02-04 04:38:15] 2026-02-04 03:37:21,877 | INFO     | 
[2026-02-04 04:38:15] 2026-02-04 03:37:21,885 | INFO     | architecture information:
[2026-02-04 04:38:15] 2026-02-04 03:37:21,885 | INFO     | executing command: cat /etc/os-release
[2026-02-04 04:38:15] 2026-02-04 03:37:21,905 | INFO     | cat /etc/os-release:
[2026-02-04 04:38:15] NAME="CentOS Linux"
[2026-02-04 04:38:15] VERSION="7 (Core)"
[2026-02-04 04:38:15] ID="centos"
[2026-02-04 04:38:15] ID_LIKE="rhel fedora"
[2026-02-04 04:38:15] VERSION_ID="7"
[2026-02-04 04:38:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 04:38:15] ANSI_COLOR="0;31"
[2026-02-04 04:38:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 04:38:15] HOME_URL="https://www.centos.org/"
[2026-02-04 04:38:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 04:38:15] 
[2026-02-04 04:38:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 04:38:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 04:38:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 04:38:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 04:38:15] 
[2026-02-04 04:38:15] 2026-02-04 03:37:21,905 | INFO     | **************************************
[2026-02-04 04:38:15] 2026-02-04 03:37:22,408 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2026-02-04 04:38:15] 2026-02-04 03:37:22,434 | INFO     | sufficient remaining disk space (3239660486656 B)
[2026-02-04 04:38:15] 2026-02-04 03:37:22,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 04:38:15] 2026-02-04 03:37:22,434 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 04:38:15] 2026-02-04 03:37:22,434 | INFO     | update_server=False
[2026-02-04 04:38:15] 2026-02-04 03:37:22,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 04:38:15] 2026-02-04 03:37:22,435 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 04:38:15] 2026-02-04 03:37:22,435 | INFO     | aborting loop
[2026-02-04 04:38:15] 2026-02-04 03:37:22,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 04:38:15] 2026-02-04 03:37:22,540 | INFO     | all data control threads have been joined
[2026-02-04 04:38:15] 2026-02-04 03:37:22,639 | INFO     | all payload control threads have been joined
[2026-02-04 04:38:15] 2026-02-04 03:37:23,242 | INFO     | all job control threads have been joined
[2026-02-04 04:38:15] 2026-02-04 03:37:23,440 | INFO     | [job] retrieve thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:23,441 | INFO     | [job] job monitor thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:23,546 | INFO     | [data] control thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:23,645 | INFO     | [payload] control thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:23,899 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,082 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,114 | INFO     | [job] validate thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,199 | INFO     | [payload] failed_post thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,233 | INFO     | [data] copytool_in thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,248 | INFO     | [job] control thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,339 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,441 | INFO     | [data] copytool_out thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,472 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 04:38:15] 2026-02-04 03:37:24,833 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 04:38:15] 2026-02-04 03:37:24,910 | INFO     | [payload] validate_post thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:24,931 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:25,478 | INFO     | [job] queue monitor thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:28,839 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 04:38:15] 2026-02-04 03:37:53,071 | INFO     | PID=2544475 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 04:38:15] 2026-02-04 03:37:53,072 | INFO     | .. there are 24 such processes running
[2026-02-04 04:38:15] 2026-02-04 03:37:53,072 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 04:38:15] 2026-02-04 03:37:53,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 04:38:15] 2026-02-04 03:37:53,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 04:38:15] 2026-02-04 03:38:08,225 | INFO     | [monitor] cgroup control has ended
[2026-02-04 04:38:15] 2026-02-04 03:38:10,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22660625459008)>', '<ExcThread(monitor, started 22659771385600)>']
[2026-02-04 04:38:15] 2026-02-04 03:38:11,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 04:38:15] 2026-02-04 03:38:11,163 | INFO     | [monitor] control thread has ended
[2026-02-04 04:38:15] 2026-02-04 03:38:15,183 | INFO     | all workflow threads have been joined
[2026-02-04 04:38:15] 2026-02-04 03:38:15,184 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 04:38:15] 2026-02-04 03:38:15,184 | INFO     | traces error code: 0
[2026-02-04 04:38:15] 2026-02-04 03:38:15,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 04:38:15] 2026-02-04 03:38:15,359 [wrapper] ==== pilot stdout END ====
[2026-02-04 04:38:15] 2026-02-04 03:38:15,363 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 04:38:15] 2026-02-04 03:38:15,367 [wrapper] pilotpid: 2544475
[2026-02-04 04:38:15] 2026-02-04 03:38:15,370 [wrapper] Pilot exit status: 0
[2026-02-04 04:38:15] 2026-02-04 03:38:15,388 [wrapper] pandaids: 7000019579
[2026-02-04 04:38:15] 2026-02-04 03:38:15,559 [wrapper] cleanup supervisor_pilot 2996705 2544476
[2026-02-04 04:38:15] 2026-02-04 03:38:15,564 [wrapper] Test setup, not cleaning
[2026-02-04 04:38:15] 2026-02-04 03:38:15,568 [wrapper] apfmon messages muted
[2026-02-04 04:38:15] 2026-02-04 03:38:15,572 [wrapper] ==== wrapper stdout END ====
[2026-02-04 04:38:15] 2026-02-04 03:38:15,576 [wrapper] ==== wrapper stderr END ====
[2026-02-04 04:38:15]  *** Error codes and diagnostics ***
[2026-02-04 04:38:15]     "exeErrorCode": 0,
[2026-02-04 04:38:15]     "exeErrorDiag": "",
[2026-02-04 04:38:15]     "pilotErrorCode": 0,
[2026-02-04 04:38:15]     "pilotErrorDiag": "",
[2026-02-04 04:38:15]  *** Listing of results directory ***
[2026-02-04 04:38:15] total 666836
[2026-02-04 04:38:15] -rwx------ 1 boinc boinc     36322 Feb  3 21:02 runpilot2-wrapper.sh
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc      5111 Feb  3 21:04 queuedata.json
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc    584422 Feb  3 21:04 pilot3.tar.gz
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc       100 Feb  4 01:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 04:38:15] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 01:32 run_atlas
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc       105 Feb  4 01:32 job.xml
[2026-02-04 04:38:15] -rw-r--r-- 2 boinc boinc 489226604 Feb  4 01:32 EVNT.48317889._000256.pool.root.1
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc      6687 Feb  4 01:32 init_data.xml
[2026-02-04 04:38:15] -rw-r--r-- 2 boinc boinc     15845 Feb  4 01:32 start_atlas.sh
[2026-02-04 04:38:15] drwxrwx--x 2 boinc boinc      4096 Feb  4 01:32 shared
[2026-02-04 04:38:15] -rw-r--r-- 2 boinc boinc    597755 Feb  4 01:32 input.tar.gz
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc         0 Feb  4 01:32 boinc_lockfile
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc      2522 Feb  4 01:32 pandaJob.out
[2026-02-04 04:38:15] -rw------- 1 boinc boinc   1009228 Feb  4 01:32 agis_schedconf.cvmfs.json
[2026-02-04 04:38:15] -rw------- 1 boinc boinc       443 Feb  4 01:32 workernode_map.json
[2026-02-04 04:38:15] drwx------ 5 boinc boinc      4096 Feb  4 01:32 pilot3
[2026-02-04 04:38:15] -rw------- 1 boinc boinc 185874288 Feb  4 04:36 HITS.48317892._013391.pool.root.1
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc       531 Feb  4 04:36 boinc_task_state.xml
[2026-02-04 04:38:15] -rw------- 1 boinc boinc      1031 Feb  4 04:37 memory_monitor_summary.json
[2026-02-04 04:38:15] -rw------- 1 boinc boinc        95 Feb  4 04:37 pilot_heartbeat.json
[2026-02-04 04:38:15] -rw------- 1 boinc boinc   1511668 Feb  4 04:37 agis_ddmendpoints.agis.ALL.json
[2026-02-04 04:38:15] -rw------- 1 boinc boinc    365749 Feb  4 04:37 log.48317892._013391.job.log.tgz.1
[2026-02-04 04:38:15] -rw------- 1 boinc boinc      6359 Feb  4 04:37 heartbeat.json
[2026-02-04 04:38:15] -rw------- 1 boinc boinc      4831 Feb  4 04:38 pilotlog.txt
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc      8192 Feb  4 04:38 boinc_mmap_file
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc        28 Feb  4 04:38 wrapper_checkpoint.txt
[2026-02-04 04:38:15] -rw------- 1 boinc boinc   1530326 Feb  4 04:38 log.48317892._013391.job.log.1
[2026-02-04 04:38:15] -rw------- 1 boinc boinc       357 Feb  4 04:38 output.list
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc       620 Feb  4 04:38 runtime_log
[2026-02-04 04:38:15] -rw------- 1 boinc boinc   1914880 Feb  4 04:38 result.tar.gz
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc      9205 Feb  4 04:38 runtime_log.err
[2026-02-04 04:38:15] -rw------- 1 boinc boinc       665 Feb  4 04:38 IMfKDmUmb78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm7nVKDmG30VJm.diag
[2026-02-04 04:38:15] -rw-r--r-- 1 boinc boinc     21140 Feb  4 04:38 stderr.txt
[2026-02-04 04:38:15] HITS file was successfully produced:
[2026-02-04 04:38:15] -rw------- 1 boinc boinc 185874288 Feb  4 04:36 shared/HITS.pool.root.1
[2026-02-04 04:38:15]  *** Contents of shared directory: ***
[2026-02-04 04:38:15] total 661764
[2026-02-04 04:38:15] -rw-r--r-- 2 boinc boinc 489226604 Feb  4 01:32 ATLAS.root_0
[2026-02-04 04:38:15] -rw-r--r-- 2 boinc boinc     15845 Feb  4 01:32 start_atlas.sh
[2026-02-04 04:38:15] -rw-r--r-- 2 boinc boinc    597755 Feb  4 01:32 input.tar.gz
[2026-02-04 04:38:15] -rw------- 1 boinc boinc 185874288 Feb  4 04:36 HITS.pool.root.1
[2026-02-04 04:38:15] -rw------- 1 boinc boinc   1914880 Feb  4 04:38 result.tar.gz
04:38:17 (2540328): run_atlas exited; CPU time 42333.603551
04:38:17 (2540328): called boinc_finish(0)

</stderr_txt>
]]>

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