Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:38:27 (3013906): wrapper (7.7.26015): starting
04:38:27 (3013906): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 04:38:27] Arguments: --nthreads 4
[2026-02-04 04:38:27] Threads: 4
[2026-02-04 04:38:27] Checking for CVMFS
[2026-02-04 04:38:27] No cvmfs_config command found, will try listing directly
[2026-02-04 04:38:27] CVMFS is ok
[2026-02-04 04:38:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 04:38:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 04:38:27] Further information can be found at the LHC@home message board.
[2026-02-04 04:38:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 04:38:27] Checking for apptainer binary...
[2026-02-04 04:38:27] which: no apptainer in ((null))
[2026-02-04 04:38:27] apptainer is not installed, using version from CVMFS
[2026-02-04 04:38:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 04:38:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-02-04 04:38:28] apptainer works
[2026-02-04 04:38:28] Set ATHENA_PROC_NUMBER=4
[2026-02-04 04:38:28] Set ATHENA_CORE_NUMBER=4
[2026-02-04 04:38:28] Starting ATLAS job with PandaID=6994198230
[2026-02-04 04:38:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 06:46:05]  *** The last 200 lines of the pilot log: ***
[2026-02-04 06:46:05] 2026-02-04 05:44:58,473 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 06:46:05] 2026-02-04 05:44:58,473 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 06:46:05] 2026-02-04 05:44:58,473 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 06:46:05] 2026-02-04 05:44:58,473 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 06:46:05] 2026-02-04 05:44:58,474 | INFO     | fitting pss+swap vs Time
[2026-02-04 06:46:05] 2026-02-04 05:44:58,475 | INFO     | sum of square deviations: 591173875.0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,475 | INFO     | sum of deviations: 14543606458.0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,475 | INFO     | mean x: 1770180107.5
[2026-02-04 06:46:05] 2026-02-04 05:44:58,475 | INFO     | mean y: 2300203.4516129033
[2026-02-04 06:46:05] 2026-02-04 05:44:58,475 | INFO     | intersect: -43546313718.738594
[2026-02-04 06:46:05] 2026-02-04 05:44:58,475 | INFO     | chi2: 1.3434339177217678
[2026-02-04 06:46:05] 2026-02-04 05:44:58,475 | INFO     | sum of square deviations: 522502820.0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,476 | INFO     | sum of deviations: 13772370221.000002
[2026-02-04 06:46:05] 2026-02-04 05:44:58,476 | INFO     | mean x: 1770179955.0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,476 | INFO     | mean y: 2298489.8151260503
[2026-02-04 06:46:05] 2026-02-04 05:44:58,476 | INFO     | intersect: -46656920876.79638
[2026-02-04 06:46:05] 2026-02-04 05:44:58,476 | INFO     | chi2: 1.3454338643226211
[2026-02-04 06:46:05] 2026-02-04 05:44:58,476 | INFO     | current chi2=1.3454338643226211 (change=-0.1488682528013664 %)
[2026-02-04 06:46:05] 2026-02-04 05:44:58,476 | INFO     | right removable region: 118
[2026-02-04 06:46:05] 2026-02-04 05:44:58,476 | INFO     | sum of square deviations: 522502820.0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | sum of deviations: -1215987724.9999998
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | mean x: 1770180260.0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | mean y: 2334492.0588235296
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | intersect: 4121962912.8151135
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | chi2: 0.0054277024905568915
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | current chi2=0.0054277024905568915 (change=99.59598291966893 %)
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | sum of square deviations: 459366752.5
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | sum of deviations: -1208543254.4999998
[2026-02-04 06:46:05] 2026-02-04 05:44:58,477 | INFO     | mean x: 1770180412.5
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | mean y: 2334456.903508772
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | intersect: 4659483859.057733
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | chi2: 0.005036276618902608
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | current chi2=0.005036276618902608 (change=7.211630931048369 %)
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | left removable region: 20
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | sum of square deviations: 291817564.5
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | sum of deviations: -406839561.0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | mean x: 1770180534.5
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | mean y: 2331176.3469387754
[2026-02-04 06:46:05] 2026-02-04 05:44:58,478 | INFO     | intersect: 2470241128.171396
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | chi2: 0.0037695458455389978
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | current memory leak: -1.39 B/s (using 98 data points, chi2=0.00)
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | could have reported an average CPU frequency of 2683 MHz (8 samples)
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | ..............................
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | . Timing measurements:
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | . get job = 0 s
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | . initial setup = 8 s
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | . payload setup = 8 s
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | . stage-in = 0 s
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | . payload execution = 7543 s
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | . stage-out = 0 s
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | . log creation = 0 s
[2026-02-04 06:46:05] 2026-02-04 05:44:58,479 | INFO     | ..............................
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | 
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | job summary report
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | --------------------------------------------------
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | PanDA job id: 6994198230
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | task id: 48442098
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | errors: (none)
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | pilot state: finished 
[2026-02-04 06:46:05] 2026-02-04 05:44:58,535 | INFO     | transexitcode: 0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | exeerrorcode: 0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | exeerrordiag: 
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | exitcode: 0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | exitmsg: OK
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | cpuconsumptiontime: 28264 s
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | nevents: 400
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | neventsw: 0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | pid: 3022965
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | pgrp: 3022965
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | corecount: 4
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | event service: False
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | sizes: {0: 2277905, 1: 2278309, 11: 2278309, 7557: 2314932, 7559: 2315070}
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | --------------------------------------------------
[2026-02-04 06:46:05] 2026-02-04 05:44:58,536 | INFO     | 
[2026-02-04 06:46:05] 2026-02-04 05:44:58,537 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2026-02-04 06:46:05] 2026-02-04 05:44:58,562 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,562 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,563 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,564 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,564 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,564 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 06:46:05] 2026-02-04 05:44:58,564 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,564 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 06:46:05] 2026-02-04 05:44:58,564 | INFO     | job 6994198230 has completed (purged errors)
[2026-02-04 06:46:05] 2026-02-04 05:44:58,564 | INFO     | overall cleanup function is called
[2026-02-04 06:46:05] 2026-02-04 05:44:59,573 | INFO     | --- collectZombieJob: --- 10, [3022965]
[2026-02-04 06:46:05] 2026-02-04 05:44:59,573 | INFO     | zombie collector waiting for pid 3022965
[2026-02-04 06:46:05] 2026-02-04 05:44:59,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 06:46:05] 2026-02-04 05:44:59,574 | INFO     | collected zombie processes
[2026-02-04 06:46:05] 2026-02-04 05:44:59,574 | INFO     | will attempt to kill all subprocesses of pid=3022965
[2026-02-04 06:46:05] 2026-02-04 05:44:59,988 | INFO     | process IDs to be killed: [3022965] (in reverse order)
[2026-02-04 06:46:05] 2026-02-04 05:45:00,124 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 06:46:05] 2026-02-04 05:45:00,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 06:46:05] 2026-02-04 05:45:00,144 | INFO     | did not find any defunct processes belonging to 3022965
[2026-02-04 06:46:05] 2026-02-04 05:45:00,156 | INFO     | did not find any defunct processes belonging to 3022965
[2026-02-04 06:46:05] 2026-02-04 05:45:00,156 | INFO     | ready for new job
[2026-02-04 06:46:05] 2026-02-04 05:45:00,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 06:46:05] 2026-02-04 05:45:00,158 | INFO     | **************************************
[2026-02-04 06:46:05] 2026-02-04 05:45:00,158 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 06:46:05] 2026-02-04 05:45:00,158 | INFO     | **************************************
[2026-02-04 06:46:05] 2026-02-04 05:45:00,158 | INFO     | 
[2026-02-04 06:46:05] 2026-02-04 05:45:00,163 | INFO     | architecture information:
[2026-02-04 06:46:05] 2026-02-04 05:45:00,164 | INFO     | executing command: cat /etc/os-release
[2026-02-04 06:46:05] 2026-02-04 05:45:00,181 | INFO     | cat /etc/os-release:
[2026-02-04 06:46:05] NAME="CentOS Linux"
[2026-02-04 06:46:05] VERSION="7 (Core)"
[2026-02-04 06:46:05] ID="centos"
[2026-02-04 06:46:05] ID_LIKE="rhel fedora"
[2026-02-04 06:46:05] VERSION_ID="7"
[2026-02-04 06:46:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 06:46:05] ANSI_COLOR="0;31"
[2026-02-04 06:46:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 06:46:05] HOME_URL="https://www.centos.org/"
[2026-02-04 06:46:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 06:46:05] 
[2026-02-04 06:46:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 06:46:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 06:46:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 06:46:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 06:46:05] 
[2026-02-04 06:46:05] 2026-02-04 05:45:00,181 | INFO     | **************************************
[2026-02-04 06:46:05] 2026-02-04 05:45:00,683 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2026-02-04 06:46:05] 2026-02-04 05:45:00,700 | INFO     | sufficient remaining disk space (3243154341888 B)
[2026-02-04 06:46:05] 2026-02-04 05:45:00,701 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 06:46:05] 2026-02-04 05:45:00,701 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 06:46:05] 2026-02-04 05:45:00,701 | INFO     | update_server=False
[2026-02-04 06:46:05] 2026-02-04 05:45:00,701 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 06:46:05] 2026-02-04 05:45:00,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 06:46:05] 2026-02-04 05:45:01,456 | INFO     | all payload control threads have been joined
[2026-02-04 06:46:05] 2026-02-04 05:45:01,482 | INFO     | all job control threads have been joined
[2026-02-04 06:46:05] 2026-02-04 05:45:01,518 | INFO     | all data control threads have been joined
[2026-02-04 06:46:05] 2026-02-04 05:45:01,708 | INFO     | [job] retrieve thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:01,865 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:01,876 | INFO     | [job] validate thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,008 | WARNING  | process 3022965 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 06:46:05] 2026-02-04 05:45:02,038 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,147 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,254 | INFO     | [payload] validate_post thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,287 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 06:46:05] 2026-02-04 05:45:02,288 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 06:46:05] 2026-02-04 05:45:02,288 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-04 06:46:05] 2026-02-04 05:45:02,288 | WARNING  | maxPSS not found in memory monitor output
[2026-02-04 06:46:05] 2026-02-04 05:45:02,288 | INFO     | skipping file size check of payload stdout file (/scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6994198230/payload.stdout) since it has not been created yet
[2026-02-04 06:46:05] 2026-02-04 05:45:02,288 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2026-02-04 06:46:05] 2026-02-04 05:45:02,306 | INFO     | sufficient remaining disk space (3243152244736 B)
[2026-02-04 06:46:05] 2026-02-04 05:45:02,306 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-04 06:46:05] 2026-02-04 05:45:02,306 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6994198230/HITS.48442098._001351.pool.root.1 since it does not exist
[2026-02-04 06:46:05] 2026-02-04 05:45:02,348 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,462 | INFO     | [payload] control thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,488 | INFO     | [job] control thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,523 | INFO     | [data] control thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,538 | INFO     | [data] copytool_in thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,667 | INFO     | number of running child processes to parent process 3022965: 1
[2026-02-04 06:46:05] 2026-02-04 05:45:02,667 | INFO     | maximum number of monitored processes: 6
[2026-02-04 06:46:05] 2026-02-04 05:45:02,668 | INFO     | aborting job monitoring since job object (job id=6994198230) has expired
[2026-02-04 06:46:05] 2026-02-04 05:45:02,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 06:46:05] 2026-02-04 05:45:02,668 | INFO     | will abort loop
[2026-02-04 06:46:05] 2026-02-04 05:45:02,707 | INFO     | [data] copytool_out thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:02,742 | INFO     | [payload] failed_post thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:03,251 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 06:46:05] 2026-02-04 05:45:03,545 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 06:46:05] 2026-02-04 05:45:03,673 | INFO     | [job] job monitor thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:04,550 | INFO     | [job] queue monitor thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:07,257 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 06:46:05] 2026-02-04 05:45:30,489 | INFO     | PID=3017900 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 06:46:05] 2026-02-04 05:45:30,489 | INFO     | .. there are 9 such processes running
[2026-02-04 06:46:05] 2026-02-04 05:45:30,490 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 06:46:05] 2026-02-04 05:45:30,490 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 06:46:05] 2026-02-04 05:45:30,490 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 06:46:05] 2026-02-04 05:45:59,788 | INFO     | [monitor] cgroup control has ended
[2026-02-04 06:46:05] 2026-02-04 05:46:00,528 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23153197700928)>', '<ExcThread(monitor, started 23152623085312)>']
[2026-02-04 06:46:05] 2026-02-04 05:46:00,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 06:46:05] 2026-02-04 05:46:00,633 | INFO     | [monitor] control thread has ended
[2026-02-04 06:46:05] 2026-02-04 05:46:05,554 | INFO     | all workflow threads have been joined
[2026-02-04 06:46:05] 2026-02-04 05:46:05,554 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 06:46:05] 2026-02-04 05:46:05,554 | INFO     | traces error code: 0
[2026-02-04 06:46:05] 2026-02-04 05:46:05,555 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 06:46:05] 2026-02-04 05:46:05,683 [wrapper] ==== pilot stdout END ====
[2026-02-04 06:46:05] 2026-02-04 05:46:05,687 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 06:46:05] 2026-02-04 05:46:05,691 [wrapper] pilotpid: 3017900
[2026-02-04 06:46:05] 2026-02-04 05:46:05,693 [wrapper] Pilot exit status: 0
[2026-02-04 06:46:05] 2026-02-04 05:46:05,703 [wrapper] pandaids: 6994198230
[2026-02-04 06:46:05] 2026-02-04 05:46:05,794 [wrapper] cleanup supervisor_pilot 3166449 3017901
[2026-02-04 06:46:05] 2026-02-04 05:46:05,797 [wrapper] Test setup, not cleaning
[2026-02-04 06:46:05] 2026-02-04 05:46:05,800 [wrapper] apfmon messages muted
[2026-02-04 06:46:05] 2026-02-04 05:46:05,803 [wrapper] ==== wrapper stdout END ====
[2026-02-04 06:46:05] 2026-02-04 05:46:05,806 [wrapper] ==== wrapper stderr END ====
[2026-02-04 06:46:05]  *** Error codes and diagnostics ***
[2026-02-04 06:46:05]     "exeErrorCode": 0,
[2026-02-04 06:46:05]     "exeErrorDiag": "",
[2026-02-04 06:46:05]     "pilotErrorCode": 0,
[2026-02-04 06:46:05]     "pilotErrorDiag": "",
[2026-02-04 06:46:05]  *** Listing of results directory ***
[2026-02-04 06:46:05] total 664096
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc    584422 Feb  3 20:58 pilot3.tar.gz
[2026-02-04 06:46:05] -rwx------ 1 boinc boinc     36322 Feb  3 20:59 runpilot2-wrapper.sh
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc      5111 Feb  3 20:59 queuedata.json
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc       100 Feb  4 04:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 06:46:05] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 04:38 run_atlas
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc       105 Feb  4 04:38 job.xml
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc      6687 Feb  4 04:38 init_data.xml
[2026-02-04 06:46:05] -rw-r--r-- 2 boinc boinc 493206682 Feb  4 04:38 EVNT.48442096._000027.pool.root.1
[2026-02-04 06:46:05] -rw-r--r-- 2 boinc boinc     15845 Feb  4 04:38 start_atlas.sh
[2026-02-04 06:46:05] drwxrwx--x 2 boinc boinc      4096 Feb  4 04:38 shared
[2026-02-04 06:46:05] -rw-r--r-- 2 boinc boinc    597760 Feb  4 04:38 input.tar.gz
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc         0 Feb  4 04:38 boinc_lockfile
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc      2525 Feb  4 04:38 pandaJob.out
[2026-02-04 06:46:05] -rw------- 1 boinc boinc   1009244 Feb  4 04:38 agis_schedconf.cvmfs.json
[2026-02-04 06:46:05] -rw------- 1 boinc boinc   1511668 Feb  4 04:38 agis_ddmendpoints.agis.ALL.json
[2026-02-04 06:46:05] -rw------- 1 boinc boinc       443 Feb  4 04:38 workernode_map.json
[2026-02-04 06:46:05] drwx------ 5 boinc boinc      4096 Feb  4 04:38 pilot3
[2026-02-04 06:46:05] -rw------- 1 boinc boinc 180179202 Feb  4 06:44 HITS.48442098._001351.pool.root.1
[2026-02-04 06:46:05] -rw------- 1 boinc boinc        95 Feb  4 06:44 pilot_heartbeat.json
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc       530 Feb  4 06:44 boinc_task_state.xml
[2026-02-04 06:46:05] -rw------- 1 boinc boinc      1028 Feb  4 06:44 memory_monitor_summary.json
[2026-02-04 06:46:05] -rw------- 1 boinc boinc    290722 Feb  4 06:44 log.48442098._001351.job.log.tgz.1
[2026-02-04 06:46:05] -rw------- 1 boinc boinc      6339 Feb  4 06:44 heartbeat.json
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc      8192 Feb  4 06:45 boinc_mmap_file
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc        27 Feb  4 06:45 wrapper_checkpoint.txt
[2026-02-04 06:46:05] -rw------- 1 boinc boinc      6372 Feb  4 06:46 pilotlog.txt
[2026-02-04 06:46:05] -rw------- 1 boinc boinc   1064266 Feb  4 06:46 log.48442098._001351.job.log.1
[2026-02-04 06:46:05] -rw------- 1 boinc boinc       357 Feb  4 06:46 output.list
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc       620 Feb  4 06:46 runtime_log
[2026-02-04 06:46:05] -rw------- 1 boinc boinc   1372160 Feb  4 06:46 result.tar.gz
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc      9204 Feb  4 06:46 runtime_log.err
[2026-02-04 06:46:05] -rw------- 1 boinc boinc       662 Feb  4 06:46 jXyKDmbjb78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkkVKDmnMMV5n.diag
[2026-02-04 06:46:05] -rw-r--r-- 1 boinc boinc     21277 Feb  4 06:46 stderr.txt
[2026-02-04 06:46:05] HITS file was successfully produced:
[2026-02-04 06:46:05] -rw------- 1 boinc boinc 180179202 Feb  4 06:44 shared/HITS.pool.root.1
[2026-02-04 06:46:05]  *** Contents of shared directory: ***
[2026-02-04 06:46:05] total 659556
[2026-02-04 06:46:05] -rw-r--r-- 2 boinc boinc 493206682 Feb  4 04:38 ATLAS.root_0
[2026-02-04 06:46:05] -rw-r--r-- 2 boinc boinc     15845 Feb  4 04:38 start_atlas.sh
[2026-02-04 06:46:05] -rw-r--r-- 2 boinc boinc    597760 Feb  4 04:38 input.tar.gz
[2026-02-04 06:46:05] -rw------- 1 boinc boinc 180179202 Feb  4 06:44 HITS.pool.root.1
[2026-02-04 06:46:05] -rw------- 1 boinc boinc   1372160 Feb  4 06:46 result.tar.gz
06:46:07 (3013906): run_atlas exited; CPU time 28674.355290
06:46:07 (3013906): called boinc_finish(0)

</stderr_txt>
]]>

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