Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:11:28 (13399): wrapper (7.7.26015): starting
18:11:28 (13399): wrapper: running run_atlas (--nthreads 8)
[2026-02-03 18:11:28] Arguments: --nthreads 8
[2026-02-03 18:11:28] Threads: 8
[2026-02-03 18:11:28] Checking for CVMFS
[2026-02-03 18:11:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-03 18:11:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-03 18:11:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-03 18:11:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-03 18:11:29] 2.11.2.0 2913 189193 85768 155847 3 9 11946109 20275200 1 130560 0 57451911 99.863 11874634 34643 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-03 18:11:29] CVMFS is ok
[2026-02-03 18:11:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 18:11:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 18:11:29] Further information can be found at the LHC@home message board.
[2026-02-03 18:11:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 18:11:29] Checking for apptainer binary...
[2026-02-03 18:11:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-03 18:11:29] Running /usr/bin/apptainer --version
[2026-02-03 18:11:29] apptainer version 1.3.2-1.el7
[2026-02-03 18:11:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 18:11:31] c-115-3.aglt2.org
[2026-02-03 18:11:31] apptainer works
[2026-02-03 18:11:31] Set ATHENA_PROC_NUMBER=8
[2026-02-03 18:11:31] Set ATHENA_CORE_NUMBER=8
[2026-02-03 18:11:31] Starting ATLAS job with PandaID=7000018693
[2026-02-03 18:11:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 20:13:19]  *** The last 200 lines of the pilot log: ***
[2026-02-03 20:13:19] 2026-02-04 01:12:46,482 | INFO     | sum of deviations: 2764356459.000002
[2026-02-03 20:13:19] 2026-02-04 01:12:46,482 | INFO     | mean x: 1770163941.0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,482 | INFO     | mean y: 2472870.4537815126
[2026-02-03 20:13:19] 2026-02-04 01:12:46,482 | INFO     | intersect: -9362766773.214071
[2026-02-03 20:13:19] 2026-02-04 01:12:46,482 | INFO     | chi2: 2.2002109325983747
[2026-02-03 20:13:19] 2026-02-04 01:12:46,482 | INFO     | sum of square deviations: 459366752.5
[2026-02-03 20:13:19] 2026-02-04 01:12:46,483 | INFO     | sum of deviations: 10309482296.500006
[2026-02-03 20:13:19] 2026-02-04 01:12:46,483 | INFO     | mean x: 1770163788.5
[2026-02-03 20:13:19] 2026-02-04 01:12:46,483 | INFO     | mean y: 2490448.1140350876
[2026-02-03 20:13:19] 2026-02-04 01:12:46,483 | INFO     | intersect: -39724965098.30392
[2026-02-03 20:13:19] 2026-02-04 01:12:46,484 | INFO     | chi2: 1.4329204291586992
[2026-02-03 20:13:19] 2026-02-04 01:12:46,484 | INFO     | current chi2=1.4329204291586992 (change=34.87349744842561 %)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,484 | INFO     | sum of square deviations: 401533110.0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,485 | INFO     | sum of deviations: 9826839956.999998
[2026-02-03 20:13:19] 2026-02-04 01:12:46,485 | INFO     | mean x: 1770163636.0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,485 | INFO     | mean y: 2489174.633027523
[2026-02-03 20:13:19] 2026-02-04 01:12:46,485 | INFO     | intersect: -43319255198.261154
[2026-02-03 20:13:19] 2026-02-04 01:12:46,485 | INFO     | chi2: 1.4357006424675343
[2026-02-03 20:13:19] 2026-02-04 01:12:46,485 | INFO     | current chi2=1.4357006424675343 (change=-0.1940242634733997 %)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,485 | INFO     | right removable region: 108
[2026-02-03 20:13:19] 2026-02-04 01:12:46,486 | INFO     | sum of square deviations: 459366752.5
[2026-02-03 20:13:19] 2026-02-04 01:12:46,486 | INFO     | sum of deviations: -13310920501.5
[2026-02-03 20:13:19] 2026-02-04 01:12:46,486 | INFO     | mean x: 1770164093.5
[2026-02-03 20:13:19] 2026-02-04 01:12:46,486 | INFO     | mean y: 2510865.9210526315
[2026-02-03 20:13:19] 2026-02-04 01:12:46,487 | INFO     | intersect: 51295978220.61018
[2026-02-03 20:13:19] 2026-02-04 01:12:46,487 | INFO     | chi2: 0.8727199942067096
[2026-02-03 20:13:19] 2026-02-04 01:12:46,487 | INFO     | current chi2=0.8727199942067096 (change=60.334712400685284 %)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,487 | INFO     | sum of square deviations: 401533110.0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,488 | INFO     | sum of deviations: -10450587954.0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,488 | INFO     | mean x: 1770164246.0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,488 | INFO     | mean y: 2503205.779816514
[2026-02-03 20:13:19] 2026-02-04 01:12:46,488 | INFO     | intersect: 46074064143.42974
[2026-02-03 20:13:19] 2026-02-04 01:12:46,488 | INFO     | chi2: 0.8529378883632323
[2026-02-03 20:13:19] 2026-02-04 01:12:46,489 | INFO     | current chi2=0.8529378883632323 (change=2.2667185322663603 %)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,489 | INFO     | left removable region: 20
[2026-02-03 20:13:19] 2026-02-04 01:12:46,489 | INFO     | sum of square deviations: 211285822.0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,489 | INFO     | sum of deviations: 467453217.5
[2026-02-03 20:13:19] 2026-02-04 01:12:46,489 | INFO     | mean x: 1770164215.5
[2026-02-03 20:13:19] 2026-02-04 01:12:46,490 | INFO     | mean y: 2512307.3295454546
[2026-02-03 20:13:19] 2026-02-04 01:12:46,490 | INFO     | intersect: -3913836410.2802825
[2026-02-03 20:13:19] 2026-02-04 01:12:46,490 | INFO     | chi2: 0.00020376106997940628
[2026-02-03 20:13:19] 2026-02-04 01:12:46,490 | INFO     | current memory leak: 2.21 B/s (using 88 data points, chi2=0.00)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | could have reported an average CPU frequency of 1795 MHz (8 samples)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | ..............................
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | . Timing measurements:
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | . get job = 0 s
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | . initial setup = 8 s
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | . payload setup = 8 s
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | . stage-in = 0 s
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | . payload execution = 7222 s
[2026-02-03 20:13:19] 2026-02-04 01:12:46,491 | INFO     | . stage-out = 0 s
[2026-02-03 20:13:19] 2026-02-04 01:12:46,492 | INFO     | . log creation = 0 s
[2026-02-03 20:13:19] 2026-02-04 01:12:46,492 | INFO     | ..............................
[2026-02-03 20:13:19] 2026-02-04 01:12:46,848 | INFO     | 
[2026-02-03 20:13:19] 2026-02-04 01:12:46,848 | INFO     | job summary report
[2026-02-03 20:13:19] 2026-02-04 01:12:46,849 | INFO     | --------------------------------------------------
[2026-02-03 20:13:19] 2026-02-04 01:12:46,849 | INFO     | PanDA job id: 7000018693
[2026-02-03 20:13:19] 2026-02-04 01:12:46,849 | INFO     | task id: 48317892
[2026-02-03 20:13:19] 2026-02-04 01:12:46,849 | INFO     | errors: (none)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,849 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 20:13:19] 2026-02-04 01:12:46,849 | INFO     | pilot state: finished 
[2026-02-03 20:13:19] 2026-02-04 01:12:46,850 | INFO     | transexitcode: 0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,850 | INFO     | exeerrorcode: 0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,850 | INFO     | exeerrordiag: 
[2026-02-03 20:13:19] 2026-02-04 01:12:46,850 | INFO     | exitcode: 0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,850 | INFO     | exitmsg: OK
[2026-02-03 20:13:19] 2026-02-04 01:12:46,850 | INFO     | cpuconsumptiontime: 53807 s
[2026-02-03 20:13:19] 2026-02-04 01:12:46,850 | INFO     | nevents: 400
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | neventsw: 0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | pid: 21872
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | pgrp: 21872
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | corecount: 8
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | event service: False
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | sizes: {0: 2277135, 1: 2278253, 12: 2278253, 7234: 2305553, 7235: 2314551, 7239: 2314929}
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | --------------------------------------------------
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | 
[2026-02-03 20:13:19] 2026-02-04 01:12:46,851 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-03 20:13:19] 2026-02-04 01:12:46,881 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,881 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,881 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,881 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,882 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,882 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,882 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,882 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,882 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,882 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,883 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,883 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,883 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,883 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,884 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,884 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,884 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 20:13:19] 2026-02-04 01:12:46,884 | INFO     | job 7000018693 has completed (purged errors)
[2026-02-03 20:13:19] 2026-02-04 01:12:46,885 | INFO     | overall cleanup function is called
[2026-02-03 20:13:19] 2026-02-04 01:12:47,893 | INFO     | --- collectZombieJob: --- 10, [21872]
[2026-02-03 20:13:19] 2026-02-04 01:12:47,893 | INFO     | zombie collector waiting for pid 21872
[2026-02-03 20:13:19] 2026-02-04 01:12:47,894 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 20:13:19] 2026-02-04 01:12:47,894 | INFO     | collected zombie processes
[2026-02-03 20:13:19] 2026-02-04 01:12:47,894 | INFO     | will attempt to kill all subprocesses of pid=21872
[2026-02-03 20:13:19] 2026-02-04 01:12:47,975 | INFO     | process IDs to be killed: [21872] (in reverse order)
[2026-02-03 20:13:19] 2026-02-04 01:12:48,033 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 20:13:19] 2026-02-04 01:12:48,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 20:13:19] 2026-02-04 01:12:48,037 | INFO     | did not find any defunct processes belonging to 21872
[2026-02-03 20:13:19] 2026-02-04 01:12:48,041 | INFO     | did not find any defunct processes belonging to 21872
[2026-02-03 20:13:19] 2026-02-04 01:12:48,041 | INFO     | ready for new job
[2026-02-03 20:13:19] 2026-02-04 01:12:48,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 20:13:19] 2026-02-04 01:12:48,043 | INFO     | **************************************
[2026-02-03 20:13:19] 2026-02-04 01:12:48,043 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 20:13:19] 2026-02-04 01:12:48,043 | INFO     | **************************************
[2026-02-03 20:13:19] 2026-02-04 01:12:48,043 | INFO     | 
[2026-02-03 20:13:19] 2026-02-04 01:12:48,044 | INFO     | architecture information:
[2026-02-03 20:13:19] 2026-02-04 01:12:48,044 | INFO     | executing command: cat /etc/os-release
[2026-02-03 20:13:19] 2026-02-04 01:12:48,063 | INFO     | cat /etc/os-release:
[2026-02-03 20:13:19] NAME="CentOS Linux"
[2026-02-03 20:13:19] VERSION="7 (Core)"
[2026-02-03 20:13:19] ID="centos"
[2026-02-03 20:13:19] ID_LIKE="rhel fedora"
[2026-02-03 20:13:19] VERSION_ID="7"
[2026-02-03 20:13:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 20:13:19] ANSI_COLOR="0;31"
[2026-02-03 20:13:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 20:13:19] HOME_URL="https://www.centos.org/"
[2026-02-03 20:13:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 20:13:19] 
[2026-02-03 20:13:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 20:13:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 20:13:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 20:13:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 20:13:19] 
[2026-02-03 20:13:19] 2026-02-04 01:12:48,064 | INFO     | **************************************
[2026-02-03 20:13:19] 2026-02-04 01:12:48,494 | WARNING  | process 21872 can no longer be monitored (due to stat problems) - aborting
[2026-02-03 20:13:19] 2026-02-04 01:12:48,560 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 20:13:19] 2026-02-04 01:12:48,561 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 20:13:19] 2026-02-04 01:12:48,561 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-03 20:13:19] 2026-02-04 01:12:48,562 | WARNING  | maxPSS not found in memory monitor output
[2026-02-03 20:13:19] 2026-02-04 01:12:48,562 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-7000018693/payload.stdout) since it has not been created yet
[2026-02-03 20:13:19] 2026-02-04 01:12:48,562 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-03 20:13:19] 2026-02-04 01:12:48,568 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-03 20:13:19] 2026-02-04 01:12:48,582 | INFO     | sufficient remaining disk space (18018729984 B)
[2026-02-03 20:13:19] 2026-02-04 01:12:48,583 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-03 20:13:19] 2026-02-04 01:12:48,583 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7000018693/HITS.48317892._013060.pool.root.1 since it does not exist
[2026-02-03 20:13:19] 2026-02-04 01:12:48,588 | INFO     | sufficient remaining disk space (18018729984 B)
[2026-02-03 20:13:19] 2026-02-04 01:12:48,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 20:13:19] 2026-02-04 01:12:48,589 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 20:13:19] 2026-02-04 01:12:48,589 | INFO     | update_server=False
[2026-02-03 20:13:19] 2026-02-04 01:12:48,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 20:13:19] 2026-02-04 01:12:48,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 20:13:19] 2026-02-04 01:12:48,671 | INFO     | number of running child processes to parent process 21872: 1
[2026-02-03 20:13:19] 2026-02-04 01:12:48,672 | INFO     | maximum number of monitored processes: 6
[2026-02-03 20:13:19] 2026-02-04 01:12:48,672 | INFO     | aborting job monitoring since job object (job id=7000018693) has expired
[2026-02-03 20:13:19] 2026-02-04 01:12:48,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 20:13:19] 2026-02-04 01:12:48,672 | INFO     | will abort loop
[2026-02-03 20:13:19] 2026-02-04 01:12:48,876 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 20:13:19] 2026-02-04 01:12:49,095 | INFO     | all payload control threads have been joined
[2026-02-03 20:13:19] 2026-02-04 01:12:49,549 | INFO     | all data control threads have been joined
[2026-02-03 20:13:19] 2026-02-04 01:12:49,595 | INFO     | [job] retrieve thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:49,677 | INFO     | [job] job monitor thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:49,678 | INFO     | [payload] validate_post thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:49,687 | INFO     | all job control threads have been joined
[2026-02-03 20:13:19] 2026-02-04 01:12:49,770 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:49,770 | INFO     | [job] validate thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:49,954 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:50,088 | INFO     | [data] copytool_in thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:50,099 | INFO     | [payload] control thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:50,114 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:50,461 | INFO     | [payload] failed_post thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:50,555 | INFO     | [data] control thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:50,684 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:50,692 | INFO     | [job] control thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:50,881 | INFO     | [data] copytool_out thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:51,578 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 20:13:19] 2026-02-04 01:12:52,580 | INFO     | [job] queue monitor thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:12:52,596 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 20:13:19] 2026-02-04 01:13:07,532 | INFO     | [monitor] cgroup control has ended
[2026-02-03 20:13:19] 2026-02-04 01:13:08,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567721654080)>', '<ExcThread(monitor, started 140566679508736)>']
[2026-02-03 20:13:19] 2026-02-04 01:13:13,874 | INFO     | all workflow threads have been joined
[2026-02-03 20:13:19] 2026-02-04 01:13:13,875 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 20:13:19] 2026-02-04 01:13:13,875 | INFO     | traces error code: 0
[2026-02-03 20:13:19] 2026-02-04 01:13:13,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 20:13:19] 2026-02-04 01:13:19,102 | INFO     | PID=17375 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-03 20:13:19] 2026-02-04 01:13:19,103 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 20:13:19] 2026-02-04 01:13:19,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 20:13:19] 2026-02-04 01:13:19,104 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 20:13:19] 2026-02-04 01:13:19,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 20:13:19] 2026-02-04 01:13:19,104 | INFO     | [monitor] control thread has ended
[2026-02-03 20:13:19] 2026-02-04 01:13:19,211 [wrapper] ==== pilot stdout END ====
[2026-02-03 20:13:19] 2026-02-04 01:13:19,216 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 20:13:19] 2026-02-04 01:13:19,221 [wrapper] pilotpid: 17375
[2026-02-03 20:13:19] 2026-02-04 01:13:19,226 [wrapper] Pilot exit status: 0
[2026-02-03 20:13:19] 2026-02-04 01:13:19,244 [wrapper] pandaids: 7000018693
[2026-02-03 20:13:19] 2026-02-04 01:13:19,288 [wrapper] cleanup supervisor_pilot  1963 17376
[2026-02-03 20:13:19] 2026-02-04 01:13:19,293 [wrapper] Test setup, not cleaning
[2026-02-03 20:13:19] 2026-02-04 01:13:19,297 [wrapper] apfmon messages muted
[2026-02-03 20:13:19] 2026-02-04 01:13:19,301 [wrapper] ==== wrapper stdout END ====
[2026-02-03 20:13:19] 2026-02-04 01:13:19,306 [wrapper] ==== wrapper stderr END ====
[2026-02-03 20:13:19]  *** Error codes and diagnostics ***
[2026-02-03 20:13:19]     "exeErrorCode": 0,
[2026-02-03 20:13:19]     "exeErrorDiag": "",
[2026-02-03 20:13:19]     "pilotErrorCode": 0,
[2026-02-03 20:13:19]     "pilotErrorDiag": "",
[2026-02-03 20:13:19]  *** Listing of results directory ***
[2026-02-03 20:13:19] total 673096
[2026-02-03 20:13:19] -rwx------ 1 boincer umatlas     36322 Feb  3 14:58 runpilot2-wrapper.sh
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas    584422 Feb  3 14:58 pilot3.tar.gz
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas      5111 Feb  3 14:58 queuedata.json
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas       100 Feb  3 18:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 20:13:19] -rwxr-xr-x 1 boincer umatlas      7986 Feb  3 18:11 run_atlas
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas       105 Feb  3 18:11 job.xml
[2026-02-03 20:13:19] -rw-r--r-- 2 boincer umatlas 495636971 Feb  3 18:11 EVNT.48317889._000249.pool.root.1
[2026-02-03 20:13:19] -rw-r--r-- 2 boincer umatlas     15845 Feb  3 18:11 start_atlas.sh
[2026-02-03 20:13:19] drwxrwx--x 2 boincer umatlas      4096 Feb  3 18:11 shared
[2026-02-03 20:13:19] -rw-r--r-- 2 boincer umatlas    597750 Feb  3 18:11 input.tar.gz
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas         0 Feb  3 18:11 boinc_lockfile
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas      2523 Feb  3 18:11 pandaJob.out
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas        57 Feb  3 18:11 setup.sh.local
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas   1009244 Feb  3 18:11 agis_schedconf.cvmfs.json
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas   1511668 Feb  3 18:11 agis_ddmendpoints.agis.ALL.json
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas       432 Feb  3 18:11 workernode_map.json
[2026-02-03 20:13:19] drwx------ 5 boincer umatlas      4096 Feb  3 18:11 pilot3
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas      5908 Feb  3 20:11 init_data.xml
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas 186819500 Feb  3 20:12 HITS.48317892._013060.pool.root.1
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas       530 Feb  3 20:12 boinc_task_state.xml
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas        95 Feb  3 20:12 pilot_heartbeat.json
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas      1049 Feb  3 20:12 memory_monitor_summary.json
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas    395870 Feb  3 20:12 log.48317892._013060.job.log.tgz.1
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas      6399 Feb  3 20:12 heartbeat.json
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas        27 Feb  3 20:13 wrapper_checkpoint.txt
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas      8192 Feb  3 20:13 boinc_mmap_file
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas       745 Feb  3 20:13 pilotlog.txt
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas   1031634 Feb  3 20:13 log.48317892._013060.job.log.1
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas       357 Feb  3 20:13 output.list
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas       620 Feb  3 20:13 runtime_log
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas   1443840 Feb  3 20:13 result.tar.gz
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas      9336 Feb  3 20:13 runtime_log.err
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas       657 Feb  3 20:13 kEuLDmzib78n9Rq4apOajLDm4fhM0noT9bVooX4SDmkEVKDmlpmtpm.diag
[2026-02-03 20:13:19] -rw-r--r-- 1 boincer umatlas     21372 Feb  3 20:13 stderr.txt
[2026-02-03 20:13:19] HITS file was successfully produced:
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas 186819500 Feb  3 20:12 shared/HITS.pool.root.1
[2026-02-03 20:13:19]  *** Contents of shared directory: ***
[2026-02-03 20:13:19] total 668484
[2026-02-03 20:13:19] -rw-r--r-- 2 boincer umatlas 495636971 Feb  3 18:11 ATLAS.root_0
[2026-02-03 20:13:19] -rw-r--r-- 2 boincer umatlas     15845 Feb  3 18:11 start_atlas.sh
[2026-02-03 20:13:19] -rw-r--r-- 2 boincer umatlas    597750 Feb  3 18:11 input.tar.gz
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas 186819500 Feb  3 20:12 HITS.pool.root.1
[2026-02-03 20:13:19] -rw------- 1 boincer umatlas   1443840 Feb  3 20:13 result.tar.gz
20:13:21 (13399): run_atlas exited; CPU time 53775.733375
20:13:21 (13399): called boinc_finish(0)

</stderr_txt>
]]>

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