Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:18:07 (1156601): wrapper (7.7.26015): starting
02:18:07 (1156601): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 02:18:07] Arguments: --nthreads 4
[2026-02-04 02:18:07] Threads: 4
[2026-02-04 02:18:07] Checking for CVMFS
[2026-02-04 02:18:07] No cvmfs_config command found, will try listing directly
[2026-02-04 02:18:07] CVMFS is ok
[2026-02-04 02:18:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 02:18:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 02:18:07] Further information can be found at the LHC@home message board.
[2026-02-04 02:18:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 02:18:07] Checking for apptainer binary...
[2026-02-04 02:18:07] which: no apptainer in ((null))
[2026-02-04 02:18:07] apptainer is not installed, using version from CVMFS
[2026-02-04 02:18:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 02:18:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-02-04 02:18:07] apptainer works
[2026-02-04 02:18:07] Set ATHENA_PROC_NUMBER=4
[2026-02-04 02:18:07] Set ATHENA_CORE_NUMBER=4
[2026-02-04 02:18:07] Starting ATLAS job with PandaID=6999845743
[2026-02-04 02:18:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 05:48:49]  *** The last 200 lines of the pilot log: ***
[2026-02-04 05:48:49] 2026-02-04 04:47:50,399 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 05:48:49] 2026-02-04 04:47:50,399 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 05:48:49] 2026-02-04 04:47:50,399 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 05:48:49] 2026-02-04 04:47:50,404 | INFO     | fitting pss+swap vs Time
[2026-02-04 05:48:49] 2026-02-04 04:47:50,404 | INFO     | sum of square deviations: 2710627567.5
[2026-02-04 05:48:49] 2026-02-04 04:47:50,406 | INFO     | sum of deviations: -47547625927.499985
[2026-02-04 05:48:49] 2026-02-04 04:47:50,406 | INFO     | mean x: 1770174177.5
[2026-02-04 05:48:49] 2026-02-04 04:47:50,406 | INFO     | mean y: 2393680.694174757
[2026-02-04 05:48:49] 2026-02-04 04:47:50,406 | INFO     | intersect: 31053350524.58009
[2026-02-04 05:48:49] 2026-02-04 04:47:50,407 | INFO     | chi2: 1.5940652377809446
[2026-02-04 05:48:49] 2026-02-04 04:47:50,407 | INFO     | sum of square deviations: 2518000700.0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,409 | INFO     | sum of deviations: -45878896721.0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,409 | INFO     | mean x: 1770174025.0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,409 | INFO     | mean y: 2395002.0497512436
[2026-02-04 05:48:49] 2026-02-04 04:47:50,409 | INFO     | intersect: 32255615293.518246
[2026-02-04 05:48:49] 2026-02-04 04:47:50,409 | INFO     | chi2: 1.5880433695922358
[2026-02-04 05:48:49] 2026-02-04 04:47:50,410 | INFO     | current chi2=1.5880433695922358 (change=0.3777679887864337 %)
[2026-02-04 05:48:49] 2026-02-04 04:47:50,410 | INFO     | right removable region: 200
[2026-02-04 05:48:49] 2026-02-04 04:47:50,410 | INFO     | sum of square deviations: 2518000700.0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,412 | INFO     | sum of deviations: -70699438041.00002
[2026-02-04 05:48:49] 2026-02-04 04:47:50,412 | INFO     | mean x: 1770174330.0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,412 | INFO     | mean y: 2411718.9850746267
[2026-02-04 05:48:49] 2026-02-04 04:47:50,412 | INFO     | intersect: 49704673662.5992
[2026-02-04 05:48:49] 2026-02-04 04:47:50,412 | INFO     | chi2: 0.28843085808943975
[2026-02-04 05:48:49] 2026-02-04 04:47:50,413 | INFO     | current chi2=0.28843085808943975 (change=81.90595646568664 %)
[2026-02-04 05:48:49] 2026-02-04 04:47:50,413 | INFO     | sum of square deviations: 2334722845.0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,414 | INFO     | sum of deviations: -61924127002.99999
[2026-02-04 05:48:49] 2026-02-04 04:47:50,415 | INFO     | mean x: 1770174482.5
[2026-02-04 05:48:49] 2026-02-04 04:47:50,415 | INFO     | mean y: 2404411.102040816
[2026-02-04 05:48:49] 2026-02-04 04:47:50,415 | INFO     | intersect: 46952949186.278465
[2026-02-04 05:48:49] 2026-02-04 04:47:50,415 | INFO     | chi2: 0.27601227479603746
[2026-02-04 05:48:49] 2026-02-04 04:47:50,416 | INFO     | current chi2=0.27601227479603746 (change=4.3055668092043735 %)
[2026-02-04 05:48:49] 2026-02-04 04:47:50,416 | INFO     | left removable region: 20
[2026-02-04 05:48:49] 2026-02-04 04:47:50,416 | INFO     | sum of square deviations: 1808350185.0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,417 | INFO     | sum of deviations: -40934382480.500015
[2026-02-04 05:48:49] 2026-02-04 04:47:50,417 | INFO     | mean x: 1770174604.5
[2026-02-04 05:48:49] 2026-02-04 04:47:50,418 | INFO     | mean y: 2388483.1611111113
[2026-02-04 05:48:49] 2026-02-04 04:47:50,418 | INFO     | intersect: 40072616539.056625
[2026-02-04 05:48:49] 2026-02-04 04:47:50,418 | INFO     | chi2: 0.21124887268557974
[2026-02-04 05:48:49] 2026-02-04 04:47:50,418 | INFO     | current memory leak: -22.64 B/s (using 180 data points, chi2=0.21)
[2026-02-04 05:48:49] 2026-02-04 04:47:50,419 | INFO     | could have reported an average CPU frequency of 2487 MHz (10 samples)
[2026-02-04 05:48:49] 2026-02-04 04:47:50,419 | INFO     | ..............................
[2026-02-04 05:48:49] 2026-02-04 04:47:50,419 | INFO     | . Timing measurements:
[2026-02-04 05:48:49] 2026-02-04 04:47:50,419 | INFO     | . get job = 0 s
[2026-02-04 05:48:49] 2026-02-04 04:47:50,419 | INFO     | . initial setup = 5 s
[2026-02-04 05:48:49] 2026-02-04 04:47:50,420 | INFO     | . payload setup = 5 s
[2026-02-04 05:48:49] 2026-02-04 04:47:50,420 | INFO     | . stage-in = 0 s
[2026-02-04 05:48:49] 2026-02-04 04:47:50,420 | INFO     | . payload execution = 12544 s
[2026-02-04 05:48:49] 2026-02-04 04:47:50,420 | INFO     | . stage-out = 1 s
[2026-02-04 05:48:49] 2026-02-04 04:47:50,420 | INFO     | . log creation = 0 s
[2026-02-04 05:48:49] 2026-02-04 04:47:50,420 | INFO     | ..............................
[2026-02-04 05:48:49] 2026-02-04 04:47:50,728 | INFO     | 
[2026-02-04 05:48:49] 2026-02-04 04:47:50,728 | INFO     | job summary report
[2026-02-04 05:48:49] 2026-02-04 04:47:50,729 | INFO     | --------------------------------------------------
[2026-02-04 05:48:49] 2026-02-04 04:47:50,729 | INFO     | PanDA job id: 6999845743
[2026-02-04 05:48:49] 2026-02-04 04:47:50,729 | INFO     | task id: 48317892
[2026-02-04 05:48:49] 2026-02-04 04:47:50,729 | INFO     | errors: (none)
[2026-02-04 05:48:49] 2026-02-04 04:47:50,729 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 05:48:49] 2026-02-04 04:47:50,729 | INFO     | pilot state: finished 
[2026-02-04 05:48:49] 2026-02-04 04:47:50,730 | INFO     | transexitcode: 0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,730 | INFO     | exeerrorcode: 0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,730 | INFO     | exeerrordiag: 
[2026-02-04 05:48:49] 2026-02-04 04:47:50,730 | INFO     | exitcode: 0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,730 | INFO     | exitmsg: OK
[2026-02-04 05:48:49] 2026-02-04 04:47:50,730 | INFO     | cpuconsumptiontime: 48742 s
[2026-02-04 05:48:49] 2026-02-04 04:47:50,730 | INFO     | nevents: 400
[2026-02-04 05:48:49] 2026-02-04 04:47:50,730 | INFO     | neventsw: 0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,731 | INFO     | pid: 1165287
[2026-02-04 05:48:49] 2026-02-04 04:47:50,731 | INFO     | pgrp: 1165287
[2026-02-04 05:48:49] 2026-02-04 04:47:50,731 | INFO     | corecount: 4
[2026-02-04 05:48:49] 2026-02-04 04:47:50,731 | INFO     | event service: False
[2026-02-04 05:48:49] 2026-02-04 04:47:50,731 | INFO     | sizes: {0: 2278028, 1: 2278262, 11: 2278262, 12553: 2308233, 12554: 2308232, 12555: 2317630}
[2026-02-04 05:48:49] 2026-02-04 04:47:50,731 | INFO     | --------------------------------------------------
[2026-02-04 05:48:49] 2026-02-04 04:47:50,731 | INFO     | 
[2026-02-04 05:48:49] 2026-02-04 04:47:50,732 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2026-02-04 05:48:49] 2026-02-04 04:47:50,754 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,755 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,755 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,756 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,758 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,758 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,758 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,758 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,758 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 05:48:49] 2026-02-04 04:47:50,759 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,759 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 05:48:49] 2026-02-04 04:47:50,759 | INFO     | job 6999845743 has completed (purged errors)
[2026-02-04 05:48:49] 2026-02-04 04:47:50,759 | INFO     | overall cleanup function is called
[2026-02-04 05:48:49] 2026-02-04 04:47:51,032 | WARNING  | process 1165287 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 05:48:49] 2026-02-04 04:47:51,269 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 05:48:49] 2026-02-04 04:47:51,270 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 05:48:49] 2026-02-04 04:47:51,271 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-04 05:48:49] 2026-02-04 04:47:51,271 | WARNING  | maxPSS not found in memory monitor output
[2026-02-04 05:48:49] 2026-02-04 04:47:51,272 | INFO     | skipping file size check of payload stdout file (/scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6999845743/payload.stdout) since it has not been created yet
[2026-02-04 05:48:49] 2026-02-04 04:47:51,272 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2026-02-04 05:48:49] 2026-02-04 04:47:51,286 | INFO     | sufficient remaining disk space (1666732523520 B)
[2026-02-04 05:48:49] 2026-02-04 04:47:51,286 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-04 05:48:49] 2026-02-04 04:47:51,286 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6999845743/HITS.48317892._011831.pool.root.1 since it does not exist
[2026-02-04 05:48:49] 2026-02-04 04:47:51,596 | INFO     | number of running child processes to parent process 1165287: 1
[2026-02-04 05:48:49] 2026-02-04 04:47:51,596 | INFO     | maximum number of monitored processes: 6
[2026-02-04 05:48:49] 2026-02-04 04:47:51,596 | INFO     | aborting job monitoring since job object (job id=6999845743) has expired
[2026-02-04 05:48:49] 2026-02-04 04:47:51,766 | INFO     | --- collectZombieJob: --- 10, [1165287]
[2026-02-04 05:48:49] 2026-02-04 04:47:51,767 | INFO     | zombie collector waiting for pid 1165287
[2026-02-04 05:48:49] 2026-02-04 04:47:51,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 05:48:49] 2026-02-04 04:47:51,767 | INFO     | collected zombie processes
[2026-02-04 05:48:49] 2026-02-04 04:47:51,767 | INFO     | will attempt to kill all subprocesses of pid=1165287
[2026-02-04 05:48:49] 2026-02-04 04:47:52,065 | INFO     | process IDs to be killed: [1165287] (in reverse order)
[2026-02-04 05:48:49] 2026-02-04 04:47:52,146 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 05:48:49] 2026-02-04 04:47:52,147 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 05:48:49] 2026-02-04 04:47:52,155 | INFO     | did not find any defunct processes belonging to 1165287
[2026-02-04 05:48:49] 2026-02-04 04:47:52,162 | INFO     | did not find any defunct processes belonging to 1165287
[2026-02-04 05:48:49] 2026-02-04 04:47:52,162 | INFO     | ready for new job
[2026-02-04 05:48:49] 2026-02-04 04:47:52,162 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 05:48:49] 2026-02-04 04:47:52,165 | INFO     | **************************************
[2026-02-04 05:48:49] 2026-02-04 04:47:52,165 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 05:48:49] 2026-02-04 04:47:52,166 | INFO     | **************************************
[2026-02-04 05:48:49] 2026-02-04 04:47:52,166 | INFO     | 
[2026-02-04 05:48:49] 2026-02-04 04:47:52,169 | INFO     | architecture information:
[2026-02-04 05:48:49] 2026-02-04 04:47:52,169 | INFO     | executing command: cat /etc/os-release
[2026-02-04 05:48:49] 2026-02-04 04:47:52,183 | INFO     | cat /etc/os-release:
[2026-02-04 05:48:49] NAME="CentOS Linux"
[2026-02-04 05:48:49] VERSION="7 (Core)"
[2026-02-04 05:48:49] ID="centos"
[2026-02-04 05:48:49] ID_LIKE="rhel fedora"
[2026-02-04 05:48:49] VERSION_ID="7"
[2026-02-04 05:48:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 05:48:49] ANSI_COLOR="0;31"
[2026-02-04 05:48:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 05:48:49] HOME_URL="https://www.centos.org/"
[2026-02-04 05:48:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 05:48:49] 
[2026-02-04 05:48:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 05:48:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 05:48:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 05:48:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 05:48:49] 
[2026-02-04 05:48:49] 2026-02-04 04:47:52,184 | INFO     | **************************************
[2026-02-04 05:48:49] 2026-02-04 04:47:52,687 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2026-02-04 05:48:49] 2026-02-04 04:47:52,700 | INFO     | sufficient remaining disk space (1666734620672 B)
[2026-02-04 05:48:49] 2026-02-04 04:47:52,701 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 05:48:49] 2026-02-04 04:47:52,701 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 05:48:49] 2026-02-04 04:47:52,701 | INFO     | update_server=False
[2026-02-04 05:48:49] 2026-02-04 04:47:52,701 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 05:48:49] 2026-02-04 04:47:52,701 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 05:48:49] 2026-02-04 04:47:52,702 | INFO     | aborting loop
[2026-02-04 05:48:49] 2026-02-04 04:47:52,819 | INFO     | all payload control threads have been joined
[2026-02-04 05:48:49] 2026-02-04 04:47:53,009 | INFO     | all data control threads have been joined
[2026-02-04 05:48:49] 2026-02-04 04:47:53,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 05:48:49] 2026-02-04 04:47:53,707 | INFO     | [job] retrieve thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:53,707 | INFO     | [job] job monitor thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:53,824 | INFO     | [payload] control thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:53,921 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:54,010 | INFO     | [data] control thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:54,052 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:54,211 | INFO     | [payload] failed_post thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:54,216 | INFO     | all job control threads have been joined
[2026-02-04 05:48:49] 2026-02-04 04:47:54,233 | INFO     | [data] copytool_in thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:54,637 | INFO     | [job] validate thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:54,641 | INFO     | [payload] validate_post thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:54,661 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:55,066 | INFO     | [data] copytool_out thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:55,108 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:55,222 | INFO     | [job] control thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:47:55,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 05:48:49] 2026-02-04 04:47:56,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 05:48:49] 2026-02-04 04:47:56,544 | INFO     | [job] queue monitor thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:48:00,168 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 05:48:49] 2026-02-04 04:48:17,175 [wrapper] supervise_pilot (15 min periods counter: 15)
[2026-02-04 05:48:49] 2026-02-04 04:48:22,973 | INFO     | PID=1160627 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 05:48:49] 2026-02-04 04:48:22,973 | INFO     | .. there are 6 such processes running
[2026-02-04 05:48:49] 2026-02-04 04:48:22,973 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 05:48:49] 2026-02-04 04:48:22,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 05:48:49] 2026-02-04 04:48:22,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 05:48:49] 2026-02-04 04:48:42,917 | INFO     | [monitor] cgroup control has ended
[2026-02-04 05:48:49] 2026-02-04 04:48:43,746 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22361049851712)>', '<ExcThread(monitor, started 22360811124480)>']
[2026-02-04 05:48:49] 2026-02-04 04:48:44,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 05:48:49] 2026-02-04 04:48:44,079 | INFO     | [monitor] control thread has ended
[2026-02-04 05:48:49] 2026-02-04 04:48:48,771 | INFO     | all workflow threads have been joined
[2026-02-04 05:48:49] 2026-02-04 04:48:48,772 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 05:48:49] 2026-02-04 04:48:48,772 | INFO     | traces error code: 0
[2026-02-04 05:48:49] 2026-02-04 04:48:48,772 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 05:48:49] 2026-02-04 04:48:48,894 [wrapper] ==== pilot stdout END ====
[2026-02-04 05:48:49] 2026-02-04 04:48:48,896 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 05:48:49] 2026-02-04 04:48:48,898 [wrapper] pilotpid: 1160627
[2026-02-04 05:48:49] 2026-02-04 04:48:48,900 [wrapper] Pilot exit status: 0
[2026-02-04 05:48:49] 2026-02-04 04:48:48,909 [wrapper] pandaids: 6999845743
[2026-02-04 05:48:49] 2026-02-04 04:48:48,956 [wrapper] cleanup supervisor_pilot 1320374 1160628
[2026-02-04 05:48:49] 2026-02-04 04:48:48,959 [wrapper] Test setup, not cleaning
[2026-02-04 05:48:49] 2026-02-04 04:48:48,961 [wrapper] apfmon messages muted
[2026-02-04 05:48:49] 2026-02-04 04:48:48,964 [wrapper] ==== wrapper stdout END ====
[2026-02-04 05:48:49] 2026-02-04 04:48:48,966 [wrapper] ==== wrapper stderr END ====
[2026-02-04 05:48:49]  *** Error codes and diagnostics ***
[2026-02-04 05:48:49]     "exeErrorCode": 0,
[2026-02-04 05:48:49]     "exeErrorDiag": "",
[2026-02-04 05:48:49]     "pilotErrorCode": 0,
[2026-02-04 05:48:49]     "pilotErrorDiag": "",
[2026-02-04 05:48:49]  *** Listing of results directory ***
[2026-02-04 05:48:49] total 675232
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc    584422 Feb  3 18:17 pilot3.tar.gz
[2026-02-04 05:48:49] -rwx------ 1 boinc boinc     36322 Feb  3 18:18 runpilot2-wrapper.sh
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc      5111 Feb  3 18:22 queuedata.json
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc       100 Feb  4 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 05:48:49] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 02:18 run_atlas
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc       105 Feb  4 02:18 job.xml
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc      6423 Feb  4 02:18 init_data.xml
[2026-02-04 05:48:49] -rw-r--r-- 2 boinc boinc 494441191 Feb  4 02:18 EVNT.48317889._000225.pool.root.1
[2026-02-04 05:48:49] -rw-r--r-- 2 boinc boinc     15845 Feb  4 02:18 start_atlas.sh
[2026-02-04 05:48:49] drwxrwx--x 2 boinc boinc      4096 Feb  4 02:18 shared
[2026-02-04 05:48:49] -rw-r--r-- 2 boinc boinc    597761 Feb  4 02:18 input.tar.gz
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc         0 Feb  4 02:18 boinc_lockfile
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc      2522 Feb  4 02:18 pandaJob.out
[2026-02-04 05:48:49] -rw------- 1 boinc boinc   1009228 Feb  4 02:18 agis_schedconf.cvmfs.json
[2026-02-04 05:48:49] -rw------- 1 boinc boinc       453 Feb  4 02:18 workernode_map.json
[2026-02-04 05:48:49] drwx------ 5 boinc boinc      4096 Feb  4 02:18 pilot3
[2026-02-04 05:48:49] -rw------- 1 boinc boinc 188719881 Feb  4 05:47 HITS.48317892._011831.pool.root.1
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc       531 Feb  4 05:47 boinc_task_state.xml
[2026-02-04 05:48:49] -rw------- 1 boinc boinc        95 Feb  4 05:47 pilot_heartbeat.json
[2026-02-04 05:48:49] -rw------- 1 boinc boinc      1038 Feb  4 05:47 memory_monitor_summary.json
[2026-02-04 05:48:49] -rw------- 1 boinc boinc   1511668 Feb  4 05:47 agis_ddmendpoints.agis.ALL.json
[2026-02-04 05:48:49] -rw------- 1 boinc boinc    383184 Feb  4 05:47 log.48317892._011831.job.log.tgz.1
[2026-02-04 05:48:49] -rw------- 1 boinc boinc      6415 Feb  4 05:47 heartbeat.json
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc      8192 Feb  4 05:48 boinc_mmap_file
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc        28 Feb  4 05:48 wrapper_checkpoint.txt
[2026-02-04 05:48:49] -rw------- 1 boinc boinc      4830 Feb  4 05:48 pilotlog.txt
[2026-02-04 05:48:49] -rw------- 1 boinc boinc   1784718 Feb  4 05:48 log.48317892._011831.job.log.1
[2026-02-04 05:48:49] -rw------- 1 boinc boinc       357 Feb  4 05:48 output.list
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc       620 Feb  4 05:48 runtime_log
[2026-02-04 05:48:49] -rw------- 1 boinc boinc   2181120 Feb  4 05:48 result.tar.gz
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc      9205 Feb  4 05:48 runtime_log.err
[2026-02-04 05:48:49] -rw------- 1 boinc boinc       665 Feb  4 05:48 RnZKDm2DZ78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmcbVKDmdVE2Wm.diag
[2026-02-04 05:48:49] -rw-r--r-- 1 boinc boinc     21291 Feb  4 05:48 stderr.txt
[2026-02-04 05:48:49] HITS file was successfully produced:
[2026-02-04 05:48:49] -rw------- 1 boinc boinc 188719881 Feb  4 05:47 shared/HITS.pool.root.1
[2026-02-04 05:48:49]  *** Contents of shared directory: ***
[2026-02-04 05:48:49] total 669896
[2026-02-04 05:48:49] -rw-r--r-- 2 boinc boinc 494441191 Feb  4 02:18 ATLAS.root_0
[2026-02-04 05:48:49] -rw-r--r-- 2 boinc boinc     15845 Feb  4 02:18 start_atlas.sh
[2026-02-04 05:48:49] -rw-r--r-- 2 boinc boinc    597761 Feb  4 02:18 input.tar.gz
[2026-02-04 05:48:49] -rw------- 1 boinc boinc 188719881 Feb  4 05:47 HITS.pool.root.1
[2026-02-04 05:48:49] -rw------- 1 boinc boinc   2181120 Feb  4 05:48 result.tar.gz
05:48:50 (1156601): run_atlas exited; CPU time 49207.278097
05:48:50 (1156601): called boinc_finish(0)

</stderr_txt>
]]>

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