Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:16:06 (1319353): wrapper (7.7.26015): starting
23:16:06 (1319353): wrapper: running run_atlas (--nthreads 6)
[2026-02-04 23:16:06] Arguments: --nthreads 6
[2026-02-04 23:16:06] Threads: 6
[2026-02-04 23:16:06] Checking for CVMFS
[2026-02-04 23:16:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 23:17:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 23:17:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 23:17:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 23:17:36] 2.13.3.0 1319572 1 29528 155866 2 1 49931531 52428801 0 130560 0 0 0.000 1338 54 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-02-04 23:17:36] CVMFS is ok
[2026-02-04 23:17:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 23:17:36] Checking for apptainer binary...
[2026-02-04 23:17:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 23:17:36] Running /usr/bin/apptainer --version
[2026-02-04 23:17:36] apptainer version 1.4.5-2.el9
[2026-02-04 23:17:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 23:17:36] testio008
[2026-02-04 23:17:36] apptainer works
[2026-02-04 23:17:36] Set ATHENA_PROC_NUMBER=6
[2026-02-04 23:17:36] Set ATHENA_CORE_NUMBER=6
[2026-02-04 23:17:36] Starting ATLAS job with PandaID=7000016408
[2026-02-04 23:17:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 00:30:04]  *** The last 200 lines of the pilot log: ***
[2026-02-05 00:30:04]  surl=/var/lib/boinc/slots/9/PanDA_Pilot-7000016408/log.48317892._012125.job.log.tgz.1
[2026-02-05 00:30:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/5e/log.48317892._012125.job.log.tgz.1
[2026-02-05 00:30:04]  workdir=None
[2026-02-05 00:30:04] ]
[2026-02-05 00:30:04] 2026-02-04 15:29:28,869 | INFO     | transferring file log.48317892._012125.job.log.tgz.1 from /var/lib/boinc/slots/9/PanDA_Pilot-7000016408/log.48317892._012125.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-05 00:30:04] 2026-02-04 15:29:28,869 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/9/PanDA_Pilot-7000016408/log.48317892._012125.job.log.tgz.1 /var/lib/boinc/slots/9/log.48317892._012125.job
[2026-02-05 00:30:04] 2026-02-04 15:29:28,877 | INFO     | adding to output.list: log.48317892._012125.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/5e/log.48317892._012125.job.log.tg
[2026-02-05 00:30:04] 2026-02-04 15:29:28,877 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-05 00:30:04] 2026-02-04 15:29:28,877 | INFO     | summary of transferred files:
[2026-02-05 00:30:04] 2026-02-04 15:29:28,877 | INFO     |  -- lfn=log.48317892._012125.job.log.tgz.1, status_code=0, status=transferred
[2026-02-05 00:30:04] 2026-02-04 15:29:28,877 | INFO     | stage-out finished correctly
[2026-02-05 00:30:04] 2026-02-04 15:29:28,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-05 00:30:04] 2026-02-04 15:29:29,122 | INFO     | time since job start (4186s) is within the limit (349056.0s)
[2026-02-05 00:30:04] 2026-02-04 15:29:29,815 | WARNING  | process 1328429 can no longer be monitored (due to stat problems) - aborting
[2026-02-05 00:30:04] 2026-02-04 15:29:29,815 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7000016408/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 00:30:04] 2026-02-04 15:29:29,815 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7000016408/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 00:30:04] 2026-02-04 15:29:29,815 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-05 00:30:04] 2026-02-04 15:29:29,815 | WARNING  | maxPSS not found in memory monitor output
[2026-02-05 00:30:04] 2026-02-04 15:29:29,815 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2527767 B
[2026-02-05 00:30:04] 2026-02-04 15:29:29,816 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15839 B
[2026-02-05 00:30:04] 2026-02-04 15:29:29,816 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-02-05 00:30:04] 2026-02-04 15:29:29,822 | INFO     | sufficient remaining disk space (276494811136 B)
[2026-02-05 00:30:04] 2026-02-04 15:29:29,822 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-02-05 00:30:04] 2026-02-04 15:29:29,822 | INFO     | size of work directory /var/lib/boinc/slots/9/PanDA_Pilot-7000016408: 2820130 B (within 5033164800 B limit)
[2026-02-05 00:30:04] 2026-02-04 15:29:29,822 | INFO     | pfn file=/var/lib/boinc/slots/9/PanDA_Pilot-7000016408/HITS.48317892._012125.pool.root.1 does not exist (skip from workdir size calculation)
[2026-02-05 00:30:04] 2026-02-04 15:29:29,822 | INFO     | total size of present files: 0 B (workdir size: 2820130 B)
[2026-02-05 00:30:04] 2026-02-04 15:29:29,822 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/9/PanDA_Pilot-7000016408/HITS.48317892._012125.pool.root.1 since it does not exist
[2026-02-05 00:30:04] 2026-02-04 15:29:29,848 | INFO     | number of running child processes to parent process 1328429: 1
[2026-02-05 00:30:04] 2026-02-04 15:29:29,848 | INFO     | maximum number of monitored processes: 6
[2026-02-05 00:30:04] 2026-02-04 15:29:31,127 | INFO     | time since job start (4188s) is within the limit (349056.0s)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,454 | INFO     | job 7000016408 has state=finished
[2026-02-05 00:30:04] 2026-02-04 15:29:31,454 | INFO     | preparing for final server update for job 7000016408 in state='finished'
[2026-02-05 00:30:04] 2026-02-04 15:29:31,454 | INFO     | reading metadata from: /var/lib/boinc/slots/9/PanDA_Pilot-7000016408/jobReport.json
[2026-02-05 00:30:04] 2026-02-04 15:29:31,455 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/9/workernode_map.json
[2026-02-05 00:30:04] 2026-02-04 15:29:31,455 | INFO     | this job has now completed (state=finished)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,455 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,455 | INFO     | log transfer has been attempted: DONE
[2026-02-05 00:30:04] 2026-02-04 15:29:31,455 | INFO     | job 7000016408 has finished - writing final server update
[2026-02-05 00:30:04] 2026-02-04 15:29:31,456 | INFO     | total number of processed events: 400 (read)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,457 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7000016408/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,457 | INFO     | extracted standard info from prmon json
[2026-02-05 00:30:04] 2026-02-04 15:29:31,457 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 00:30:04] 2026-02-04 15:29:31,457 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 00:30:04] 2026-02-04 15:29:31,457 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 00:30:04] 2026-02-04 15:29:31,457 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 00:30:04] 2026-02-04 15:29:31,458 | INFO     | fitting pss+swap vs Time
[2026-02-05 00:30:04] 2026-02-04 15:29:31,458 | INFO     | sum of square deviations: 73882315.5
[2026-02-05 00:30:04] 2026-02-04 15:29:31,458 | INFO     | sum of deviations: -5565813758.500001
[2026-02-05 00:30:04] 2026-02-04 15:29:31,458 | INFO     | mean x: 1770216970.5
[2026-02-05 00:30:04] 2026-02-04 15:29:31,458 | INFO     | mean y: 2738779.9838709678
[2026-02-05 00:30:04] 2026-02-04 15:29:31,458 | INFO     | intersect: 133359387164.11702
[2026-02-05 00:30:04] 2026-02-04 15:29:31,458 | INFO     | chi2: 0.03165930110390959
[2026-02-05 00:30:04] 2026-02-04 15:29:31,458 | INFO     | current memory leak: -75.33 B/s (using 62 data points, chi2=0.03)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | could have reported an average CPU frequency of 4250 MHz (6 samples)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | ..............................
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | . Timing measurements:
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | . get job = 0 s
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | . initial setup = 11 s
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | . payload setup = 7 s
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | . stage-in = 0 s
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | . payload execution = 4163 s
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | . stage-out = 0 s
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | . log creation = 0 s
[2026-02-05 00:30:04] 2026-02-04 15:29:31,459 | INFO     | ..............................
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | 
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | job summary report
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | --------------------------------------------------
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | PanDA job id: 7000016408
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | task id: 48317892
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | errors: (none)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | pilot state: finished 
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | transexitcode: 0
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | exeerrorcode: 0
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | exeerrordiag: 
[2026-02-05 00:30:04] 2026-02-04 15:29:31,979 | INFO     | exitcode: 0
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | exitmsg: OK
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | cpuconsumptiontime: 23198 s
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | nevents: 400
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | neventsw: 0
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | pid: 1328429
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | pgrp: 1328429
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | corecount: 6
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | event service: False
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | sizes: {0: 2277961, 1: 2278223, 11: 2278251, 4174: 2304229, 4175: 2313283, 4177: 2313545}
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | --------------------------------------------------
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | 
[2026-02-05 00:30:04] 2026-02-04 15:29:31,980 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | job 7000016408 has completed (purged errors)
[2026-02-05 00:30:04] 2026-02-04 15:29:31,987 | INFO     | overall cleanup function is called
[2026-02-05 00:30:04] 2026-02-04 15:29:32,993 | INFO     | --- collectZombieJob: --- 10, [1328429]
[2026-02-05 00:30:04] 2026-02-04 15:29:32,993 | INFO     | zombie collector waiting for pid 1328429
[2026-02-05 00:30:04] 2026-02-04 15:29:32,993 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 00:30:04] 2026-02-04 15:29:32,993 | INFO     | collected zombie processes
[2026-02-05 00:30:04] 2026-02-04 15:29:32,993 | INFO     | will attempt to kill all subprocesses of pid=1328429
[2026-02-05 00:30:04] 2026-02-04 15:29:33,055 | INFO     | process IDs to be killed: [1328429] (in reverse order)
[2026-02-05 00:30:04] 2026-02-04 15:29:33,086 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 00:30:04] 2026-02-04 15:29:33,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 00:30:04] 2026-02-04 15:29:33,089 | INFO     | did not find any defunct processes belonging to 1328429
[2026-02-05 00:30:04] 2026-02-04 15:29:33,091 | INFO     | did not find any defunct processes belonging to 1328429
[2026-02-05 00:30:04] 2026-02-04 15:29:33,091 | INFO     | ready for new job
[2026-02-05 00:30:04] 2026-02-04 15:29:33,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 00:30:04] 2026-02-04 15:29:33,092 | INFO     | **************************************
[2026-02-05 00:30:04] 2026-02-04 15:29:33,093 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 00:30:04] 2026-02-04 15:29:33,093 | INFO     | **************************************
[2026-02-05 00:30:04] 2026-02-04 15:29:33,093 | INFO     | 
[2026-02-05 00:30:04] 2026-02-04 15:29:33,094 | INFO     | architecture information:
[2026-02-05 00:30:04] 2026-02-04 15:29:33,094 | INFO     | executing command: cat /etc/os-release
[2026-02-05 00:30:04] 2026-02-04 15:29:33,103 | INFO     | cat /etc/os-release:
[2026-02-05 00:30:04] NAME="CentOS Linux"
[2026-02-05 00:30:04] VERSION="7 (Core)"
[2026-02-05 00:30:04] ID="centos"
[2026-02-05 00:30:04] ID_LIKE="rhel fedora"
[2026-02-05 00:30:04] VERSION_ID="7"
[2026-02-05 00:30:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 00:30:04] ANSI_COLOR="0;31"
[2026-02-05 00:30:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 00:30:04] HOME_URL="https://www.centos.org/"
[2026-02-05 00:30:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 00:30:04] 
[2026-02-05 00:30:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 00:30:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 00:30:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 00:30:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 00:30:04] 
[2026-02-05 00:30:04] 2026-02-04 15:29:33,103 | INFO     | **************************************
[2026-02-05 00:30:04] 2026-02-04 15:29:33,606 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-02-05 00:30:04] 2026-02-04 15:29:33,616 | INFO     | sufficient remaining disk space (276499005440 B)
[2026-02-05 00:30:04] 2026-02-04 15:29:33,616 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 00:30:04] 2026-02-04 15:29:33,616 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 00:30:04] 2026-02-04 15:29:33,616 | INFO     | update_server=False
[2026-02-05 00:30:04] 2026-02-04 15:29:33,616 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 00:30:04] 2026-02-04 15:29:33,616 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 00:30:04] 2026-02-04 15:29:33,617 | INFO     | aborting loop
[2026-02-05 00:30:04] 2026-02-04 15:29:33,918 | INFO     | all job control threads have been joined
[2026-02-05 00:30:04] 2026-02-04 15:29:34,091 | INFO     | all payload control threads have been joined
[2026-02-05 00:30:04] 2026-02-04 15:29:34,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 00:30:04] 2026-02-04 15:29:34,504 | INFO     | all data control threads have been joined
[2026-02-05 00:30:04] 2026-02-04 15:29:34,621 | INFO     | [job] retrieve thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:34,622 | INFO     | [job] job monitor thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:34,842 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:34,846 | INFO     | [payload] failed_post thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:34,923 | INFO     | [job] control thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:34,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 00:30:04] 2026-02-04 15:29:35,097 | INFO     | [payload] control thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:35,509 | INFO     | [data] control thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:35,666 | INFO     | [payload] validate_post thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:35,887 | INFO     | [job] validate thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:35,960 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:36,022 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:36,080 | INFO     | [data] copytool_in thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:36,423 | INFO     | [data] copytool_out thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:36,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 00:30:04] 2026-02-04 15:29:37,508 | INFO     | [job] queue monitor thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:38,955 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:44,080 | INFO     | job.realtimelogging is not enabled
[2026-02-05 00:30:04] 2026-02-04 15:29:45,081 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 00:30:04] 2026-02-04 15:29:49,833 | INFO     | [monitor] cgroup control has ended
[2026-02-05 00:30:04] 2026-02-04 15:29:50,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140662472005440)>', '<ExcThread(monitor, started 140662116706048)>']
[2026-02-05 00:30:04] 2026-02-04 15:29:55,280 | INFO     | all workflow threads have been joined
[2026-02-05 00:30:04] 2026-02-04 15:29:55,280 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 00:30:04] 2026-02-04 15:29:55,280 | INFO     | traces error code: 0
[2026-02-05 00:30:04] 2026-02-04 15:29:55,280 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 00:30:04] 2026-02-04 15:30:04,215 | INFO     | PID=1323783 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-05 00:30:04] 2026-02-04 15:30:04,215 | INFO     | .. there are 2 such processes running
[2026-02-05 00:30:04] 2026-02-04 15:30:04,215 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 00:30:04] 2026-02-04 15:30:04,215 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 00:30:04] 2026-02-04 15:30:04,215 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 00:30:04] 2026-02-04 15:30:04,215 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 00:30:04] 2026-02-04 15:30:04,215 | INFO     | [monitor] control thread has ended
[2026-02-05 00:30:04] 2026-02-04 15:30:04,263 [wrapper] ==== pilot stdout END ====
[2026-02-05 00:30:04] 2026-02-04 15:30:04,264 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 00:30:04] 2026-02-04 15:30:04,265 [wrapper] pilotpid: 1323783
[2026-02-05 00:30:04] 2026-02-04 15:30:04,265 [wrapper] Pilot exit status: 0
[2026-02-05 00:30:04] 2026-02-04 15:30:04,268 [wrapper] pandaids: 7000016408
[2026-02-05 00:30:04] 2026-02-04 15:30:04,277 [wrapper] cleanup supervisor_pilot 1347094 1323784
[2026-02-05 00:30:04] 2026-02-04 15:30:04,278 [wrapper] Test setup, not cleaning
[2026-02-05 00:30:04] 2026-02-04 15:30:04,279 [wrapper] apfmon messages muted
[2026-02-05 00:30:04] 2026-02-04 15:30:04,280 [wrapper] ==== wrapper stdout END ====
[2026-02-05 00:30:04] 2026-02-04 15:30:04,281 [wrapper] ==== wrapper stderr END ====
[2026-02-05 00:30:04]  *** Error codes and diagnostics ***
[2026-02-05 00:30:04]     "exeErrorCode": 0,
[2026-02-05 00:30:04]     "exeErrorDiag": "",
[2026-02-05 00:30:04]     "pilotErrorCode": 0,
[2026-02-05 00:30:04]     "pilotErrorDiag": "",
[2026-02-05 00:30:04]  *** Listing of results directory ***
[2026-02-05 00:30:04] total 668368
[2026-02-05 00:30:04] -rwx------. 1 boinc boinc     36322 Feb  4 02:15 runpilot2-wrapper.sh
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc      5111 Feb  4 02:16 queuedata.json
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc    584422 Feb  4 02:17 pilot3.tar.gz
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc       100 Feb  4 23:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 00:30:04] -rwxr-xr-x. 1 boinc boinc      7986 Feb  4 23:16 run_atlas
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc       105 Feb  4 23:16 job.xml
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc      9526 Feb  4 23:16 init_data.xml
[2026-02-05 00:30:04] -rw-r--r--. 2 boinc boinc 500173686 Feb  4 23:16 EVNT.48317889._000231.pool.root.1
[2026-02-05 00:30:04] -rw-r--r--. 2 boinc boinc     15845 Feb  4 23:16 start_atlas.sh
[2026-02-05 00:30:04] drwxrwx--x. 2 boinc boinc        68 Feb  4 23:16 shared
[2026-02-05 00:30:04] -rw-r--r--. 2 boinc boinc    597753 Feb  4 23:16 input.tar.gz
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc         0 Feb  4 23:16 boinc_lockfile
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc      2522 Feb  4 23:17 pandaJob.out
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc   1009228 Feb  4 23:19 agis_schedconf.cvmfs.json
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc   1511668 Feb  4 23:19 agis_ddmendpoints.agis.ALL.json
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc       416 Feb  4 23:19 workernode_map.json
[2026-02-05 00:30:04] drwx------. 5 boinc boinc      4096 Feb  4 23:19 pilot3
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc 178493142 Feb  5 00:29 HITS.48317892._012125.pool.root.1
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc      1007 Feb  5 00:29 memory_monitor_summary.json
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc    276198 Feb  5 00:29 log.48317892._012125.job.log.tgz.1
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc      6299 Feb  5 00:29 heartbeat.json
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc       530 Feb  5 00:29 boinc_task_state.xml
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc      8192 Feb  5 00:30 boinc_mmap_file
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc        27 Feb  5 00:30 wrapper_checkpoint.txt
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc       822 Feb  5 00:30 pilotlog.txt
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc        95 Feb  5 00:30 pilot_heartbeat.json
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc    630803 Feb  5 00:30 log.48317892._012125.job.log.1
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc       357 Feb  5 00:30 output.list
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc       620 Feb  5 00:30 runtime_log
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc    921600 Feb  5 00:30 result.tar.gz
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc      8774 Feb  5 00:30 runtime_log.err
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc       641 Feb  5 00:30 ip6KDmOBZ78n9Rq4apOajLDm4fhM0noT9bVooX4SDmC6UKDmkpPdZn.diag
[2026-02-05 00:30:04] -rw-r--r--. 1 boinc boinc     22227 Feb  5 00:30 stderr.txt
[2026-02-05 00:30:04] HITS file was successfully produced:
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc 178493142 Feb  5 00:29 shared/HITS.pool.root.1
[2026-02-05 00:30:04]  *** Contents of shared directory: ***
[2026-02-05 00:30:04] total 664264
[2026-02-05 00:30:04] -rw-r--r--. 2 boinc boinc 500173686 Feb  4 23:16 ATLAS.root_0
[2026-02-05 00:30:04] -rw-r--r--. 2 boinc boinc     15845 Feb  4 23:16 start_atlas.sh
[2026-02-05 00:30:04] -rw-r--r--. 2 boinc boinc    597753 Feb  4 23:16 input.tar.gz
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc 178493142 Feb  5 00:29 HITS.pool.root.1
[2026-02-05 00:30:04] -rw-------. 1 boinc boinc    921600 Feb  5 00:30 result.tar.gz
00:30:06 (1319353): run_atlas exited; CPU time 23226.924104
00:30:06 (1319353): called boinc_finish(0)

</stderr_txt>
]]>

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