Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:42:26 (365663): wrapper (7.7.26015): starting
04:42:26 (365663): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 04:42:26] Arguments: --nthreads 4
[2026-02-04 04:42:26] Threads: 4
[2026-02-04 04:42:26] Checking for CVMFS
[2026-02-04 04:42:26] No cvmfs_config command found, will try listing directly
[2026-02-04 04:42:26] CVMFS is ok
[2026-02-04 04:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 04:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 04:42:26] Further information can be found at the LHC@home message board.
[2026-02-04 04:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 04:42:26] Checking for apptainer binary...
[2026-02-04 04:42:26] which: no apptainer in ((null))
[2026-02-04 04:42:26] apptainer is not installed, using version from CVMFS
[2026-02-04 04:42:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 04:42:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-02-04 04:42:26] apptainer works
[2026-02-04 04:42:26] Set ATHENA_PROC_NUMBER=4
[2026-02-04 04:42:26] Set ATHENA_CORE_NUMBER=4
[2026-02-04 04:42:26] Starting ATLAS job with PandaID=7000310606
[2026-02-04 04:42:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 06:54:03]  *** The last 200 lines of the pilot log: ***
[2026-02-04 06:54:03] 2026-02-04 05:53:01,311 | INFO     | job 7000310606 has state=finished
[2026-02-04 06:54:03] 2026-02-04 05:53:01,311 | INFO     | preparing for final server update for job 7000310606 in state='finished'
[2026-02-04 06:54:03] 2026-02-04 05:53:01,311 | INFO     | reading metadata from: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-7000310606/jobReport.json
[2026-02-04 06:54:03] 2026-02-04 05:53:01,313 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot48/slots/0/workernode_map.json
[2026-02-04 06:54:03] 2026-02-04 05:53:01,313 | INFO     | this job has now completed (state=finished)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,313 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,313 | INFO     | log transfer has been attempted: DONE
[2026-02-04 06:54:03] 2026-02-04 05:53:01,313 | INFO     | job 7000310606 has finished - writing final server update
[2026-02-04 06:54:03] 2026-02-04 05:53:01,314 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3586950/.job.ad'
[2026-02-04 06:54:03] 2026-02-04 05:53:01,314 | INFO     | total number of processed events: 400 (read)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,328 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-7000310606/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,328 | INFO     | extracted standard info from prmon json
[2026-02-04 06:54:03] 2026-02-04 05:53:01,328 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 06:54:03] 2026-02-04 05:53:01,328 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 06:54:03] 2026-02-04 05:53:01,329 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 06:54:03] 2026-02-04 05:53:01,329 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 06:54:03] 2026-02-04 05:53:01,330 | INFO     | fitting pss+swap vs Time
[2026-02-04 06:54:03] 2026-02-04 05:53:01,330 | INFO     | sum of square deviations: 650252192.0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | sum of deviations: 10114519037.5
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | mean x: 1770180467.5
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | mean y: 2315309.8828125
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | intersect: -27532423147.929874
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | chi2: 1.290477297117952
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | sum of square deviations: 576985702.0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | sum of deviations: 9625061838.999998
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | mean x: 1770180315.0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,331 | INFO     | mean y: 2314291.138211382
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | intersect: -29527178275.135983
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | chi2: 1.292293969079935
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | current chi2=1.292293969079935 (change=-0.14077519736615407 %)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | right removable region: 122
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | sum of square deviations: 576985702.0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | sum of deviations: -4000423676.000001
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | mean x: 1770180620.0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | mean y: 2343958.6178861787
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | intersect: 12275563968.226305
[2026-02-04 06:54:03] 2026-02-04 05:53:01,332 | INFO     | chi2: 0.016496492209030458
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | current chi2=0.016496492209030458 (change=98.72167513168404 %)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | sum of square deviations: 509440249.5
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | sum of deviations: -2919870621.5
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | mean x: 1770180772.5
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | mean y: 2341538.8220338984
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | intersect: 10148180697.466928
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | chi2: 0.014589595419085442
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | current chi2=0.014589595419085442 (change=11.55940769578364 %)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | left removable region: 20
[2026-02-04 06:54:03] 2026-02-04 05:53:01,333 | INFO     | sum of square deviations: 329031285.5
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | sum of deviations: -779469681.4999999
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | mean x: 1770180894.5
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | mean y: 2335513.401960784
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | intersect: 4195864818.484714
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | chi2: 0.009654587998670076
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | current memory leak: -2.37 B/s (using 102 data points, chi2=0.01)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | could have reported an average CPU frequency of 2676 MHz (8 samples)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | ..............................
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | . Timing measurements:
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | . get job = 0 s
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | . initial setup = 7 s
[2026-02-04 06:54:03] 2026-02-04 05:53:01,334 | INFO     | . payload setup = 8 s
[2026-02-04 06:54:03] 2026-02-04 05:53:01,335 | INFO     | . stage-in = 0 s
[2026-02-04 06:54:03] 2026-02-04 05:53:01,335 | INFO     | . payload execution = 7783 s
[2026-02-04 06:54:03] 2026-02-04 05:53:01,335 | INFO     | . stage-out = 0 s
[2026-02-04 06:54:03] 2026-02-04 05:53:01,335 | INFO     | . log creation = 0 s
[2026-02-04 06:54:03] 2026-02-04 05:53:01,335 | INFO     | ..............................
[2026-02-04 06:54:03] 2026-02-04 05:53:01,801 | INFO     | time since job start (7814s) is within the limit (349056.0s)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | 
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | job summary report
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | --------------------------------------------------
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | PanDA job id: 7000310606
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | task id: 48317892
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | errors: (none)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | pilot state: finished 
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | transexitcode: 0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | exeerrorcode: 0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,816 | INFO     | exeerrordiag: 
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | exitcode: 0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | exitmsg: OK
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | cpuconsumptiontime: 29862 s
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | nevents: 400
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | neventsw: 0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | pid: 374719
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | pgrp: 374719
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | corecount: 4
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | event service: False
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | sizes: {0: 2277745, 1: 2278262, 12: 2278262, 7795: 2306011, 7796: 2306010, 7797: 2315086, 7800: 2315270, 7803: 2315464}
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | --------------------------------------------------
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | 
[2026-02-04 06:54:03] 2026-02-04 05:53:01,817 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2026-02-04 06:54:03] 2026-02-04 05:53:01,843 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,844 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | job 7000310606 has completed (purged errors)
[2026-02-04 06:54:03] 2026-02-04 05:53:01,845 | INFO     | overall cleanup function is called
[2026-02-04 06:54:03] 2026-02-04 05:53:02,854 | INFO     | --- collectZombieJob: --- 10, [374719]
[2026-02-04 06:54:03] 2026-02-04 05:53:02,854 | INFO     | zombie collector waiting for pid 374719
[2026-02-04 06:54:03] 2026-02-04 05:53:02,854 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 06:54:03] 2026-02-04 05:53:02,854 | INFO     | collected zombie processes
[2026-02-04 06:54:03] 2026-02-04 05:53:02,855 | INFO     | will attempt to kill all subprocesses of pid=374719
[2026-02-04 06:54:03] 2026-02-04 05:53:03,168 | INFO     | process IDs to be killed: [374719] (in reverse order)
[2026-02-04 06:54:03] 2026-02-04 05:53:03,288 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 06:54:03] 2026-02-04 05:53:03,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 06:54:03] 2026-02-04 05:53:03,303 | INFO     | did not find any defunct processes belonging to 374719
[2026-02-04 06:54:03] 2026-02-04 05:53:03,313 | INFO     | did not find any defunct processes belonging to 374719
[2026-02-04 06:54:03] 2026-02-04 05:53:03,314 | INFO     | ready for new job
[2026-02-04 06:54:03] 2026-02-04 05:53:03,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 06:54:03] 2026-02-04 05:53:03,315 | INFO     | **************************************
[2026-02-04 06:54:03] 2026-02-04 05:53:03,315 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 06:54:03] 2026-02-04 05:53:03,315 | INFO     | **************************************
[2026-02-04 06:54:03] 2026-02-04 05:53:03,315 | INFO     | 
[2026-02-04 06:54:03] 2026-02-04 05:53:03,321 | INFO     | architecture information:
[2026-02-04 06:54:03] 2026-02-04 05:53:03,321 | INFO     | executing command: cat /etc/os-release
[2026-02-04 06:54:03] 2026-02-04 05:53:03,336 | INFO     | cat /etc/os-release:
[2026-02-04 06:54:03] NAME="CentOS Linux"
[2026-02-04 06:54:03] VERSION="7 (Core)"
[2026-02-04 06:54:03] ID="centos"
[2026-02-04 06:54:03] ID_LIKE="rhel fedora"
[2026-02-04 06:54:03] VERSION_ID="7"
[2026-02-04 06:54:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 06:54:03] ANSI_COLOR="0;31"
[2026-02-04 06:54:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 06:54:03] HOME_URL="https://www.centos.org/"
[2026-02-04 06:54:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 06:54:03] 
[2026-02-04 06:54:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 06:54:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 06:54:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 06:54:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 06:54:03] 
[2026-02-04 06:54:03] 2026-02-04 05:53:03,337 | INFO     | **************************************
[2026-02-04 06:54:03] 2026-02-04 05:53:03,840 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2026-02-04 06:54:03] 2026-02-04 05:53:03,856 | INFO     | sufficient remaining disk space (3252916584448 B)
[2026-02-04 06:54:03] 2026-02-04 05:53:03,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 06:54:03] 2026-02-04 05:53:03,856 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 06:54:03] 2026-02-04 05:53:03,856 | INFO     | update_server=False
[2026-02-04 06:54:03] 2026-02-04 05:53:03,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 06:54:03] 2026-02-04 05:53:03,857 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 06:54:03] 2026-02-04 05:53:03,857 | INFO     | aborting loop
[2026-02-04 06:54:03] 2026-02-04 05:53:04,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 06:54:03] 2026-02-04 05:53:04,229 | INFO     | all data control threads have been joined
[2026-02-04 06:54:03] 2026-02-04 05:53:04,621 | INFO     | all payload control threads have been joined
[2026-02-04 06:54:03] 2026-02-04 05:53:04,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 06:54:03] 2026-02-04 05:53:04,862 | INFO     | [job] retrieve thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:04,863 | INFO     | [job] job monitor thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:05,023 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:05,031 | INFO     | [payload] validate_post thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:05,234 | INFO     | [data] control thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:05,359 | INFO     | all job control threads have been joined
[2026-02-04 06:54:03] 2026-02-04 05:53:05,399 | INFO     | [data] copytool_in thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:05,576 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:05,627 | INFO     | [payload] control thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:05,979 | INFO     | [job] validate thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:06,016 | INFO     | [data] copytool_out thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:06,037 | INFO     | [payload] failed_post thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:06,256 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:06,362 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:06,365 | INFO     | [job] control thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:06,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 06:54:03] 2026-02-04 05:53:07,404 | INFO     | [job] queue monitor thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:08,803 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 06:54:03] 2026-02-04 05:53:35,284 | INFO     | PID=369656 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-04 06:54:03] 2026-02-04 05:53:35,284 | INFO     | .. there are 6 such processes running
[2026-02-04 06:54:03] 2026-02-04 05:53:35,284 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 06:54:03] 2026-02-04 05:53:35,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 06:54:03] 2026-02-04 05:53:35,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 06:54:03] 2026-02-04 05:53:58,231 | INFO     | [monitor] cgroup control has ended
[2026-02-04 06:54:03] 2026-02-04 05:53:58,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22620416722752)>', '<ExcThread(monitor, started 22619975829248)>']
[2026-02-04 06:54:03] 2026-02-04 05:53:59,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 06:54:03] 2026-02-04 05:53:59,397 | INFO     | [monitor] control thread has ended
[2026-02-04 06:54:03] 2026-02-04 05:54:03,431 | INFO     | all workflow threads have been joined
[2026-02-04 06:54:03] 2026-02-04 05:54:03,431 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 06:54:03] 2026-02-04 05:54:03,431 | INFO     | traces error code: 0
[2026-02-04 06:54:03] 2026-02-04 05:54:03,431 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 06:54:03] 2026-02-04 05:54:03,538 [wrapper] ==== pilot stdout END ====
[2026-02-04 06:54:03] 2026-02-04 05:54:03,541 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 06:54:03] 2026-02-04 05:54:03,544 [wrapper] pilotpid: 369656
[2026-02-04 06:54:03] 2026-02-04 05:54:03,546 [wrapper] Pilot exit status: 0
[2026-02-04 06:54:03] 2026-02-04 05:54:03,557 [wrapper] pandaids: 7000310606
[2026-02-04 06:54:03] 2026-02-04 05:54:03,638 [wrapper] cleanup supervisor_pilot  526897 369657
[2026-02-04 06:54:03] 2026-02-04 05:54:03,642 [wrapper] Test setup, not cleaning
[2026-02-04 06:54:03] 2026-02-04 05:54:03,645 [wrapper] apfmon messages muted
[2026-02-04 06:54:03] 2026-02-04 05:54:03,647 [wrapper] ==== wrapper stdout END ====
[2026-02-04 06:54:03] 2026-02-04 05:54:03,650 [wrapper] ==== wrapper stderr END ====
[2026-02-04 06:54:03]  *** Error codes and diagnostics ***
[2026-02-04 06:54:03]     "exeErrorCode": 0,
[2026-02-04 06:54:03]     "exeErrorDiag": "",
[2026-02-04 06:54:03]     "pilotErrorCode": 0,
[2026-02-04 06:54:03]     "pilotErrorDiag": "",
[2026-02-04 06:54:03]  *** Listing of results directory ***
[2026-02-04 06:54:03] total 680700
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc    584422 Feb  3 22:56 pilot3.tar.gz
[2026-02-04 06:54:03] -rwx------ 1 boinc boinc     36322 Feb  3 22:57 runpilot2-wrapper.sh
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc      5111 Feb  3 22:58 queuedata.json
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc       100 Feb  4 04:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 06:54:03] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 04:42 run_atlas
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc       105 Feb  4 04:42 job.xml
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc      6687 Feb  4 04:42 init_data.xml
[2026-02-04 06:54:03] -rw-r--r-- 2 boinc boinc 502433635 Feb  4 04:42 EVNT.48317889._000262.pool.root.1
[2026-02-04 06:54:03] -rw-r--r-- 2 boinc boinc     15845 Feb  4 04:42 start_atlas.sh
[2026-02-04 06:54:03] drwxrwx--x 2 boinc boinc      4096 Feb  4 04:42 shared
[2026-02-04 06:54:03] -rw-r--r-- 2 boinc boinc    597755 Feb  4 04:42 input.tar.gz
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc         0 Feb  4 04:42 boinc_lockfile
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc      2522 Feb  4 04:42 pandaJob.out
[2026-02-04 06:54:03] -rw------- 1 boinc boinc   1009244 Feb  4 04:42 agis_schedconf.cvmfs.json
[2026-02-04 06:54:03] -rw------- 1 boinc boinc   1511668 Feb  4 04:42 agis_ddmendpoints.agis.ALL.json
[2026-02-04 06:54:03] -rw------- 1 boinc boinc       440 Feb  4 04:42 workernode_map.json
[2026-02-04 06:54:03] drwx------ 5 boinc boinc      4096 Feb  4 04:42 pilot3
[2026-02-04 06:54:03] -rw------- 1 boinc boinc 187810587 Feb  4 06:52 HITS.48317892._013697.pool.root.1
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc       530 Feb  4 06:52 boinc_task_state.xml
[2026-02-04 06:54:03] -rw------- 1 boinc boinc        95 Feb  4 06:52 pilot_heartbeat.json
[2026-02-04 06:54:03] -rw------- 1 boinc boinc      1042 Feb  4 06:52 memory_monitor_summary.json
[2026-02-04 06:54:03] -rw------- 1 boinc boinc    314759 Feb  4 06:52 log.48317892._013697.job.log.tgz.1
[2026-02-04 06:54:03] -rw------- 1 boinc boinc      6350 Feb  4 06:53 heartbeat.json
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc      8192 Feb  4 06:53 boinc_mmap_file
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc        27 Feb  4 06:53 wrapper_checkpoint.txt
[2026-02-04 06:54:03] -rw------- 1 boinc boinc      4829 Feb  4 06:54 pilotlog.txt
[2026-02-04 06:54:03] -rw------- 1 boinc boinc   1107148 Feb  4 06:54 log.48317892._013697.job.log.1
[2026-02-04 06:54:03] -rw------- 1 boinc boinc       357 Feb  4 06:54 output.list
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc       620 Feb  4 06:54 runtime_log
[2026-02-04 06:54:03] -rw------- 1 boinc boinc   1443840 Feb  4 06:54 result.tar.gz
[2026-02-04 06:54:03] -rw------- 1 boinc boinc       662 Feb  4 06:54 ySLODmiZd78n9Rq4apOajLDm4fhM0noT9bVooX4SDm7UVKDmoHFF8n.diag
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc      9204 Feb  4 06:54 runtime_log.err
[2026-02-04 06:54:03] -rw-r--r-- 1 boinc boinc     21129 Feb  4 06:54 stderr.txt
[2026-02-04 06:54:03] HITS file was successfully produced:
[2026-02-04 06:54:03] -rw------- 1 boinc boinc 187810587 Feb  4 06:52 shared/HITS.pool.root.1
[2026-02-04 06:54:03]  *** Contents of shared directory: ***
[2026-02-04 06:54:03] total 676092
[2026-02-04 06:54:03] -rw-r--r-- 2 boinc boinc 502433635 Feb  4 04:42 ATLAS.root_0
[2026-02-04 06:54:03] -rw-r--r-- 2 boinc boinc     15845 Feb  4 04:42 start_atlas.sh
[2026-02-04 06:54:03] -rw-r--r-- 2 boinc boinc    597755 Feb  4 04:42 input.tar.gz
[2026-02-04 06:54:03] -rw------- 1 boinc boinc 187810587 Feb  4 06:52 HITS.pool.root.1
[2026-02-04 06:54:03] -rw------- 1 boinc boinc   1443840 Feb  4 06:54 result.tar.gz
06:54:05 (365663): run_atlas exited; CPU time 30268.976356
06:54:05 (365663): called boinc_finish(0)

</stderr_txt>
]]>

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