Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
05:47:09 (2330691): wrapper (7.7.26015): starting
05:47:09 (2330691): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 05:47:09] Arguments: --nthreads 4
[2026-02-04 05:47:09] Threads: 4
[2026-02-04 05:47:09] Checking for CVMFS
[2026-02-04 05:47:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 05:47:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 05:47:10] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 05:47:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 05:47:10] 2.13.1.0 1483057 9543 118136 155855 3 58 8635524 10240000 1005 130560 0 11224465 99.994 328457 316 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-04 05:47:10] CVMFS is ok
[2026-02-04 05:47:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 05:47:10] Checking for apptainer binary...
[2026-02-04 05:47:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 05:47:10] Running /usr/bin/apptainer --version
[2026-02-04 05:47:10] apptainer version 1.4.5
[2026-02-04 05:47:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 05:47:11] peachesvl
[2026-02-04 05:47:11] apptainer works
[2026-02-04 05:47:11] Set ATHENA_PROC_NUMBER=4
[2026-02-04 05:47:11] Set ATHENA_CORE_NUMBER=4
[2026-02-04 05:47:11] Starting ATLAS job with PandaID=6996177009
[2026-02-04 05:47:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 07:21:06]  *** The last 200 lines of the pilot log: ***
[2026-02-04 07:21:06]  mtime=0
[2026-02-04 07:21:06]  protocol_id=None
[2026-02-04 07:21:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-04 07:21:06]  replicas=None
[2026-02-04 07:21:06]  scope=mc23_13p6TeV
[2026-02-04 07:21:06]  status=None
[2026-02-04 07:21:06]  status_code=0
[2026-02-04 07:21:06]  storage_token=
[2026-02-04 07:21:06]  surl=/var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996177009/log.48317872._017428.job.log.tgz.1
[2026-02-04 07:21:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/8c/log.48317872._017428.job.log.tgz.1
[2026-02-04 07:21:06]  workdir=None
[2026-02-04 07:21:06] ]
[2026-02-04 07:21:06] 2026-02-04 06:20:30,923 | INFO     | transferring file log.48317872._017428.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996177009/log.48317872._017428.job.log.tgz.1 to /var/li
[2026-02-04 07:21:06] 2026-02-04 06:20:30,923 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996177009/log.48317872._017428.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-02-04 07:21:06] 2026-02-04 06:20:30,970 | INFO     | adding to output.list: log.48317872._017428.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/8c/log.48317872._017428.job.log.tg
[2026-02-04 07:21:06] 2026-02-04 06:20:30,973 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-04 07:21:06] 2026-02-04 06:20:30,974 | INFO     | summary of transferred files:
[2026-02-04 07:21:06] 2026-02-04 06:20:30,974 | INFO     |  -- lfn=log.48317872._017428.job.log.tgz.1, status_code=0, status=transferred
[2026-02-04 07:21:06] 2026-02-04 06:20:30,975 | INFO     | stage-out finished correctly
[2026-02-04 07:21:06] 2026-02-04 06:20:31,358 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-04 07:21:06] 2026-02-04 06:20:31,875 | INFO     | PID=2336634 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-04 07:21:06] 2026-02-04 06:20:31,875 | INFO     | .. there are 3 such processes running
[2026-02-04 07:21:06] 2026-02-04 06:20:32,778 | WARNING  | process 2348071 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 07:21:06] 2026-02-04 06:20:32,779 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996177009/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 07:21:06] 2026-02-04 06:20:32,876 | INFO     | time since job start (5567s) is within the limit (349056.0s)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,142 | INFO     | number of running child processes to parent process 2348071: 1
[2026-02-04 07:21:06] 2026-02-04 06:20:33,143 | INFO     | maximum number of monitored processes: 6
[2026-02-04 07:21:06] 2026-02-04 06:20:33,211 | INFO     | job 6996177009 has state=finished
[2026-02-04 07:21:06] 2026-02-04 06:20:33,211 | INFO     | preparing for final server update for job 6996177009 in state='finished'
[2026-02-04 07:21:06] 2026-02-04 06:20:33,211 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996177009/jobReport.json
[2026-02-04 07:21:06] 2026-02-04 06:20:33,215 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/0/workernode_map.json
[2026-02-04 07:21:06] 2026-02-04 06:20:33,215 | INFO     | this job has now completed (state=finished)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,215 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,215 | INFO     | log transfer has been attempted: DONE
[2026-02-04 07:21:06] 2026-02-04 06:20:33,216 | INFO     | job 6996177009 has finished - writing final server update
[2026-02-04 07:21:06] 2026-02-04 06:20:33,216 | INFO     | total number of processed events: 400 (read)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,220 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6996177009/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,221 | INFO     | extracted standard info from prmon json
[2026-02-04 07:21:06] 2026-02-04 06:20:33,221 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 07:21:06] 2026-02-04 06:20:33,221 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 07:21:06] 2026-02-04 06:20:33,221 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 07:21:06] 2026-02-04 06:20:33,222 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 07:21:06] 2026-02-04 06:20:33,223 | INFO     | fitting pss+swap vs Time
[2026-02-04 07:21:06] 2026-02-04 06:20:33,223 | INFO     | sum of square deviations: 183761585.0
[2026-02-04 07:21:06] 2026-02-04 06:20:33,224 | INFO     | sum of deviations: -4809350867.499999
[2026-02-04 07:21:06] 2026-02-04 06:20:33,224 | INFO     | mean x: 1770183336.5
[2026-02-04 07:21:06] 2026-02-04 06:20:33,224 | INFO     | mean y: 2359289.654761905
[2026-02-04 07:21:06] 2026-02-04 06:20:33,224 | INFO     | intersect: 46331045260.829414
[2026-02-04 07:21:06] 2026-02-04 06:20:33,224 | INFO     | chi2: 0.04677586403310717
[2026-02-04 07:21:06] 2026-02-04 06:20:33,224 | INFO     | current memory leak: -26.17 B/s (using 84 data points, chi2=0.05)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,225 | INFO     | could have reported an average CPU frequency of 3700 MHz (7 samples)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,225 | INFO     | ..............................
[2026-02-04 07:21:06] 2026-02-04 06:20:33,225 | INFO     | . Timing measurements:
[2026-02-04 07:21:06] 2026-02-04 06:20:33,225 | INFO     | . get job = 0 s
[2026-02-04 07:21:06] 2026-02-04 06:20:33,225 | INFO     | . initial setup = 12 s
[2026-02-04 07:21:06] 2026-02-04 06:20:33,225 | INFO     | . payload setup = 13 s
[2026-02-04 07:21:06] 2026-02-04 06:20:33,226 | INFO     | . stage-in = 0 s
[2026-02-04 07:21:06] 2026-02-04 06:20:33,226 | INFO     | . payload execution = 5535 s
[2026-02-04 07:21:06] 2026-02-04 06:20:33,226 | INFO     | . stage-out = 0 s
[2026-02-04 07:21:06] 2026-02-04 06:20:33,226 | INFO     | . log creation = 0 s
[2026-02-04 07:21:06] 2026-02-04 06:20:33,226 | INFO     | ..............................
[2026-02-04 07:21:06] 2026-02-04 06:20:33,301 | INFO     | 
[2026-02-04 07:21:06] 2026-02-04 06:20:33,301 | INFO     | job summary report
[2026-02-04 07:21:06] 2026-02-04 06:20:33,301 | INFO     | --------------------------------------------------
[2026-02-04 07:21:06] 2026-02-04 06:20:33,301 | INFO     | PanDA job id: 6996177009
[2026-02-04 07:21:06] 2026-02-04 06:20:33,301 | INFO     | task id: 48317872
[2026-02-04 07:21:06] 2026-02-04 06:20:33,301 | INFO     | errors: (none)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | pilot state: finished 
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | transexitcode: 0
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | exeerrorcode: 0
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | exeerrordiag: 
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | exitcode: 0
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | exitmsg: OK
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | cpuconsumptiontime: 20369 s
[2026-02-04 07:21:06] 2026-02-04 06:20:33,302 | INFO     | nevents: 400
[2026-02-04 07:21:06] 2026-02-04 06:20:33,303 | INFO     | neventsw: 0
[2026-02-04 07:21:06] 2026-02-04 06:20:33,303 | INFO     | pid: 2348071
[2026-02-04 07:21:06] 2026-02-04 06:20:33,303 | INFO     | pgrp: 2348071
[2026-02-04 07:21:06] 2026-02-04 06:20:33,303 | INFO     | corecount: 4
[2026-02-04 07:21:06] 2026-02-04 06:20:33,303 | INFO     | event service: False
[2026-02-04 07:21:06] 2026-02-04 06:20:33,303 | INFO     | sizes: {0: 2278234, 11: 2278234, 5553: 2304784, 5555: 2313866, 5557: 2314004}
[2026-02-04 07:21:06] 2026-02-04 06:20:33,303 | INFO     | --------------------------------------------------
[2026-02-04 07:21:06] 2026-02-04 06:20:33,303 | INFO     | 
[2026-02-04 07:21:06] 2026-02-04 06:20:33,304 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/0
[2026-02-04 07:21:06] 2026-02-04 06:20:33,352 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,353 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,354 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,354 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,354 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,355 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,356 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 07:21:06] 2026-02-04 06:20:33,356 | INFO     | job 6996177009 has completed (purged errors)
[2026-02-04 07:21:06] 2026-02-04 06:20:33,357 | INFO     | overall cleanup function is called
[2026-02-04 07:21:06] 2026-02-04 06:20:34,367 | INFO     | --- collectZombieJob: --- 10, [2348071]
[2026-02-04 07:21:06] 2026-02-04 06:20:34,367 | INFO     | zombie collector waiting for pid 2348071
[2026-02-04 07:21:06] 2026-02-04 06:20:34,367 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 07:21:06] 2026-02-04 06:20:34,367 | INFO     | collected zombie processes
[2026-02-04 07:21:06] 2026-02-04 06:20:34,367 | INFO     | will attempt to kill all subprocesses of pid=2348071
[2026-02-04 07:21:06] 2026-02-04 06:20:34,754 | INFO     | process IDs to be killed: [2348071] (in reverse order)
[2026-02-04 07:21:06] 2026-02-04 06:20:34,897 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 07:21:06] 2026-02-04 06:20:34,898 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 07:21:06] 2026-02-04 06:20:34,909 | INFO     | did not find any defunct processes belonging to 2348071
[2026-02-04 07:21:06] 2026-02-04 06:20:34,918 | INFO     | did not find any defunct processes belonging to 2348071
[2026-02-04 07:21:06] 2026-02-04 06:20:34,919 | INFO     | ready for new job
[2026-02-04 07:21:06] 2026-02-04 06:20:34,919 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 07:21:06] 2026-02-04 06:20:34,923 | INFO     | **************************************
[2026-02-04 07:21:06] 2026-02-04 06:20:34,923 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 07:21:06] 2026-02-04 06:20:34,923 | INFO     | **************************************
[2026-02-04 07:21:06] 2026-02-04 06:20:34,923 | INFO     | 
[2026-02-04 07:21:06] 2026-02-04 06:20:34,924 | INFO     | pilot is running in a VM
[2026-02-04 07:21:06] 2026-02-04 06:20:34,924 | INFO     | architecture information:
[2026-02-04 07:21:06] 2026-02-04 06:20:34,926 | INFO     | executing command: cat /etc/os-release
[2026-02-04 07:21:06] 2026-02-04 06:20:34,961 | INFO     | cat /etc/os-release:
[2026-02-04 07:21:06] NAME="CentOS Linux"
[2026-02-04 07:21:06] VERSION="7 (Core)"
[2026-02-04 07:21:06] ID="centos"
[2026-02-04 07:21:06] ID_LIKE="rhel fedora"
[2026-02-04 07:21:06] VERSION_ID="7"
[2026-02-04 07:21:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 07:21:06] ANSI_COLOR="0;31"
[2026-02-04 07:21:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 07:21:06] HOME_URL="https://www.centos.org/"
[2026-02-04 07:21:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 07:21:06] 
[2026-02-04 07:21:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 07:21:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 07:21:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 07:21:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 07:21:06] 
[2026-02-04 07:21:06] 2026-02-04 06:20:34,962 | INFO     | **************************************
[2026-02-04 07:21:06] 2026-02-04 06:20:35,466 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/0
[2026-02-04 07:21:06] 2026-02-04 06:20:35,503 | INFO     | sufficient remaining disk space (54903439360 B)
[2026-02-04 07:21:06] 2026-02-04 06:20:35,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 07:21:06] 2026-02-04 06:20:35,504 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 07:21:06] 2026-02-04 06:20:35,504 | INFO     | update_server=False
[2026-02-04 07:21:06] 2026-02-04 06:20:35,505 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 07:21:06] 2026-02-04 06:20:35,648 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-04 07:21:06] 2026-02-04 06:20:35,648 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-04 07:21:06] 2026-02-04 06:20:35,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 07:21:06] 2026-02-04 06:20:35,650 | INFO     | will abort loop
[2026-02-04 07:21:06] 2026-02-04 06:20:36,511 | INFO     | [job] retrieve thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:36,525 | INFO     | all data control threads have been joined
[2026-02-04 07:21:06] 2026-02-04 06:20:36,583 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 07:21:06] 2026-02-04 06:20:36,656 | INFO     | [job] job monitor thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:36,690 | INFO     | [payload] failed_post thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:36,786 | INFO     | all payload control threads have been joined
[2026-02-04 07:21:06] 2026-02-04 06:20:36,900 | INFO     | [job] validate thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:36,921 | INFO     | all job control threads have been joined
[2026-02-04 07:21:06] 2026-02-04 06:20:37,012 | INFO     | [payload] validate_post thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:37,089 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:37,284 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:37,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 07:21:06] 2026-02-04 06:20:37,531 | INFO     | [data] control thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:37,661 | INFO     | [data] copytool_in thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:37,792 | INFO     | [payload] control thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:37,927 | INFO     | [job] control thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:37,986 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:38,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 07:21:06] 2026-02-04 06:20:38,590 | INFO     | [data] copytool_out thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:39,321 | INFO     | [job] queue monitor thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:41,448 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:45,584 | INFO     | job.realtimelogging is not enabled
[2026-02-04 07:21:06] 2026-02-04 06:20:46,590 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 07:21:06] 2026-02-04 06:20:51,452 | INFO     | [monitor] cgroup control has ended
[2026-02-04 07:21:06] 2026-02-04 06:20:51,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138326407542592)>', '<ExcThread(monitor, started 138325746751232)>']
[2026-02-04 07:21:06] 2026-02-04 06:20:56,918 | INFO     | all workflow threads have been joined
[2026-02-04 07:21:06] 2026-02-04 06:20:56,918 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 07:21:06] 2026-02-04 06:20:56,919 | INFO     | traces error code: 0
[2026-02-04 07:21:06] 2026-02-04 06:20:56,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 07:21:06] 2026-02-04 06:21:06,301 | INFO     | PID=2336634 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 07:21:06] 2026-02-04 06:21:06,301 | INFO     | .. there are 3 such processes running
[2026-02-04 07:21:06] 2026-02-04 06:21:06,301 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 07:21:06] 2026-02-04 06:21:06,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 07:21:06] 2026-02-04 06:21:06,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 07:21:06] 2026-02-04 06:21:06,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 07:21:06] 2026-02-04 06:21:06,302 | INFO     | [monitor] control thread has ended
[2026-02-04 07:21:06] 2026-02-04 06:21:06,508 [wrapper] ==== pilot stdout END ====
[2026-02-04 07:21:06] 2026-02-04 06:21:06,518 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 07:21:06] 2026-02-04 06:21:06,528 [wrapper] pilotpid: 2336634
[2026-02-04 07:21:06] 2026-02-04 06:21:06,538 [wrapper] Pilot exit status: 0
[2026-02-04 07:21:06] 2026-02-04 06:21:06,573 [wrapper] pandaids: 6996177009
[2026-02-04 07:21:06] 2026-02-04 06:21:06,678 [wrapper] cleanup supervisor_pilot 2380204 2336635
[2026-02-04 07:21:06] 2026-02-04 06:21:06,688 [wrapper] Test setup, not cleaning
[2026-02-04 07:21:06] 2026-02-04 06:21:06,698 [wrapper] apfmon messages muted
[2026-02-04 07:21:06] 2026-02-04 06:21:06,707 [wrapper] ==== wrapper stdout END ====
[2026-02-04 07:21:06] 2026-02-04 06:21:06,717 [wrapper] ==== wrapper stderr END ====
[2026-02-04 07:21:06]  *** Error codes and diagnostics ***
[2026-02-04 07:21:06]     "exeErrorCode": 0,
[2026-02-04 07:21:06]     "exeErrorDiag": "",
[2026-02-04 07:21:06]     "pilotErrorCode": 0,
[2026-02-04 07:21:06]     "pilotErrorDiag": "",
[2026-02-04 07:21:06]  *** Listing of results directory ***
[2026-02-04 07:21:06] insgesamt 662216
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc    584422 Feb  1 18:33 pilot3.tar.gz
[2026-02-04 07:21:06] -rwx------ 1 yeti boinc     36322 Feb  1 18:33 runpilot2-wrapper.sh
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc      5111 Feb  1 18:33 queuedata.json
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc       100 Feb  4 05:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 07:21:06] -rwxr-xr-x 1 yeti boinc      7986 Feb  4 05:47 run_atlas
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc       105 Feb  4 05:47 job.xml
[2026-02-04 07:21:06] -rw-r--r-- 2 yeti boinc 493438587 Feb  4 05:47 EVNT.48317869._000284.pool.root.1
[2026-02-04 07:21:06] drwxrwx--x 2 yeti boinc      4096 Feb  4 05:47 shared
[2026-02-04 07:21:06] -rw-r--r-- 2 yeti boinc    597761 Feb  4 05:47 input.tar.gz
[2026-02-04 07:21:06] -rw-r--r-- 2 yeti boinc     15845 Feb  4 05:47 start_atlas.sh
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc      6559 Feb  4 05:47 init_data.xml
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc         0 Feb  4 05:47 boinc_setup_complete
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc         0 Feb  4 05:47 boinc_lockfile
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc      2519 Feb  4 05:47 pandaJob.out
[2026-02-04 07:21:06] -rw------- 1 yeti boinc        52 Feb  4 05:47 setup.sh.local
[2026-02-04 07:21:06] -rw------- 1 yeti boinc   1009236 Feb  4 05:47 agis_schedconf.cvmfs.json
[2026-02-04 07:21:06] -rw------- 1 yeti boinc   1511668 Feb  4 05:47 agis_ddmendpoints.agis.ALL.json
[2026-02-04 07:21:06] -rw------- 1 yeti boinc       422 Feb  4 05:47 workernode_map.json
[2026-02-04 07:21:06] drwx------ 5 yeti boinc      4096 Feb  4 05:47 pilot3
[2026-02-04 07:21:06] -rw------- 1 yeti boinc 178512373 Feb  4 07:19 HITS.48317872._017428.pool.root.1
[2026-02-04 07:21:06] -rw------- 1 yeti boinc        95 Feb  4 07:20 pilot_heartbeat.json
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc       530 Feb  4 07:20 boinc_task_state.xml
[2026-02-04 07:21:06] -rw------- 1 yeti boinc      1036 Feb  4 07:20 memory_monitor_summary.json
[2026-02-04 07:21:06] -rw------- 1 yeti boinc    287439 Feb  4 07:20 log.48317872._017428.job.log.tgz.1
[2026-02-04 07:21:06] -rw------- 1 yeti boinc      6277 Feb  4 07:20 heartbeat.json
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc      8192 Feb  4 07:21 boinc_mmap_file
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc        27 Feb  4 07:21 wrapper_checkpoint.txt
[2026-02-04 07:21:06] -rw------- 1 yeti boinc       822 Feb  4 07:21 pilotlog.txt
[2026-02-04 07:21:06] -rw------- 1 yeti boinc    818941 Feb  4 07:21 log.48317872._017428.job.log.1
[2026-02-04 07:21:06] -rw------- 1 yeti boinc       357 Feb  4 07:21 output.list
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc       620 Feb  4 07:21 runtime_log
[2026-02-04 07:21:06] -rw------- 1 yeti boinc   1126400 Feb  4 07:21 result.tar.gz
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc      9546 Feb  4 07:21 runtime_log.err
[2026-02-04 07:21:06] -rw------- 1 yeti boinc       639 Feb  4 07:21 r2pLDmnVq68n9Rq4apOajLDm4fhM0noT9bVooX4SDmrJQKDm5acDcn.diag
[2026-02-04 07:21:06] -rw-r--r-- 1 yeti boinc     21508 Feb  4 07:21 stderr.txt
[2026-02-04 07:21:06] HITS file was successfully produced:
[2026-02-04 07:21:06] -rw------- 1 yeti boinc 178512373 Feb  4 07:19 shared/HITS.pool.root.1
[2026-02-04 07:21:06]  *** Contents of shared directory: ***
[2026-02-04 07:21:06] insgesamt 657916
[2026-02-04 07:21:06] -rw-r--r-- 2 yeti boinc 493438587 Feb  4 05:47 ATLAS.root_0
[2026-02-04 07:21:06] -rw-r--r-- 2 yeti boinc    597761 Feb  4 05:47 input.tar.gz
[2026-02-04 07:21:06] -rw-r--r-- 2 yeti boinc     15845 Feb  4 05:47 start_atlas.sh
[2026-02-04 07:21:06] -rw------- 1 yeti boinc 178512373 Feb  4 07:19 HITS.pool.root.1
[2026-02-04 07:21:06] -rw------- 1 yeti boinc   1126400 Feb  4 07:21 result.tar.gz
07:21:08 (2330691): run_atlas exited; CPU time 20610.510939
07:21:08 (2330691): called boinc_finish(0)

</stderr_txt>
]]>

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