Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:28:58 (3769496): wrapper (7.7.26015): starting
11:28:58 (3769496): wrapper: running run_atlas (--nthreads 3)
[2026-02-04 11:28:58] Arguments: --nthreads 3
[2026-02-04 11:28:58] Threads: 3
[2026-02-04 11:28:58] Checking for CVMFS
[2026-02-04 11:28:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 11:28:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 11:28:58] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 11:28:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 11:28:59] 2.9.2.0 2679616 7888 74664 155864 1 50 19261442 36864001 0 130560 0 3098709 99.983 286353 6369 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 11:28:59] CVMFS is ok
[2026-02-04 11:28:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 11:28:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 11:28:59] Further information can be found at the LHC@home message board.
[2026-02-04 11:28:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 11:28:59] Checking for apptainer binary...
[2026-02-04 11:28:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 11:28:59] Running /usr/bin/apptainer --version
[2026-02-04 11:28:59] apptainer version 1.4.1-1.1
[2026-02-04 11:28:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 11:28:59] magicA244b
[2026-02-04 11:28:59] apptainer works
[2026-02-04 11:28:59] Set ATHENA_PROC_NUMBER=3
[2026-02-04 11:28:59] Set ATHENA_CORE_NUMBER=3
[2026-02-04 11:28:59] Starting ATLAS job with PandaID=6998621445
[2026-02-04 11:28:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 13:45:35]  *** The last 200 lines of the pilot log: ***
[2026-02-04 13:45:35] 2026-02-04 12:44:38,034 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 13:45:35] 2026-02-04 12:44:38,034 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 13:45:35] 2026-02-04 12:44:38,034 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 13:45:35] 2026-02-04 12:44:38,035 | INFO     | job 6998621445 has completed (purged errors)
[2026-02-04 13:45:35] 2026-02-04 12:44:38,035 | INFO     | overall cleanup function is called
[2026-02-04 13:45:35] 2026-02-04 12:44:38,459 | WARNING  | process 3777976 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 13:45:35] 2026-02-04 12:44:38,485 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 13:45:35] 2026-02-04 12:44:38,515 | INFO     | number of running child processes to parent process 3777976: 1
[2026-02-04 13:45:35] 2026-02-04 12:44:38,516 | INFO     | maximum number of monitored processes: 6
[2026-02-04 13:45:35] 2026-02-04 12:44:38,516 | INFO     | aborting job monitoring since job object (job id=6998621445) has expired
[2026-02-04 13:45:35] 2026-02-04 12:44:39,041 | INFO     | --- collectZombieJob: --- 10, [3777976]
[2026-02-04 13:45:35] 2026-02-04 12:44:39,041 | INFO     | zombie collector waiting for pid 3777976
[2026-02-04 13:45:35] 2026-02-04 12:44:39,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 13:45:35] 2026-02-04 12:44:39,042 | INFO     | collected zombie processes
[2026-02-04 13:45:35] 2026-02-04 12:44:39,042 | INFO     | will attempt to kill all subprocesses of pid=3777976
[2026-02-04 13:45:35] 2026-02-04 12:44:39,077 | INFO     | process IDs to be killed: [3777976] (in reverse order)
[2026-02-04 13:45:35] 2026-02-04 12:44:39,102 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 13:45:35] 2026-02-04 12:44:39,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 13:45:35] 2026-02-04 12:44:39,103 | INFO     | did not find any defunct processes belonging to 3777976
[2026-02-04 13:45:35] 2026-02-04 12:44:39,104 | INFO     | did not find any defunct processes belonging to 3777976
[2026-02-04 13:45:35] 2026-02-04 12:44:39,104 | INFO     | ready for new job
[2026-02-04 13:45:35] 2026-02-04 12:44:39,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 13:45:35] 2026-02-04 12:44:39,105 | INFO     | **************************************
[2026-02-04 13:45:35] 2026-02-04 12:44:39,105 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 13:45:35] 2026-02-04 12:44:39,105 | INFO     | **************************************
[2026-02-04 13:45:35] 2026-02-04 12:44:39,105 | INFO     | 
[2026-02-04 13:45:35] 2026-02-04 12:44:39,105 | INFO     | architecture information:
[2026-02-04 13:45:35] 2026-02-04 12:44:39,105 | INFO     | executing command: cat /etc/os-release
[2026-02-04 13:45:35] 2026-02-04 12:44:39,115 | INFO     | cat /etc/os-release:
[2026-02-04 13:45:35] NAME="CentOS Linux"
[2026-02-04 13:45:35] VERSION="7 (Core)"
[2026-02-04 13:45:35] ID="centos"
[2026-02-04 13:45:35] ID_LIKE="rhel fedora"
[2026-02-04 13:45:35] VERSION_ID="7"
[2026-02-04 13:45:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 13:45:35] ANSI_COLOR="0;31"
[2026-02-04 13:45:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 13:45:35] HOME_URL="https://www.centos.org/"
[2026-02-04 13:45:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 13:45:35] 
[2026-02-04 13:45:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 13:45:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 13:45:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 13:45:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 13:45:35] 
[2026-02-04 13:45:35] 2026-02-04 12:44:39,115 | INFO     | **************************************
[2026-02-04 13:45:35] 2026-02-04 12:44:39,619 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 13:45:35] 2026-02-04 12:44:39,631 | INFO     | sufficient remaining disk space (338685853696 B)
[2026-02-04 13:45:35] 2026-02-04 12:44:39,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 13:45:35] 2026-02-04 12:44:39,632 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 13:45:35] 2026-02-04 12:44:39,632 | INFO     | update_server=False
[2026-02-04 13:45:35] 2026-02-04 12:44:39,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 13:45:35] 2026-02-04 12:44:39,632 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 13:45:35] 2026-02-04 12:44:39,632 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 13:45:35] 2026-02-04 12:44:39,632 | INFO     | aborting loop
[2026-02-04 13:45:35] 2026-02-04 12:44:39,632 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 13:45:35] 2026-02-04 12:44:39,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 13:45:35] 2026-02-04 12:44:39,722 | INFO     | all data control threads have been joined
[2026-02-04 13:45:35] 2026-02-04 12:44:39,991 | INFO     | all job control threads have been joined
[2026-02-04 13:45:35] 2026-02-04 12:44:40,637 | INFO     | [job] retrieve thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:40,638 | INFO     | [job] job monitor thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:40,638 | INFO     | [job] queue monitor thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:40,699 | INFO     | [payload] validate_post thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:40,728 | INFO     | [data] control thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:40,777 | INFO     | all payload control threads have been joined
[2026-02-04 13:45:35] 2026-02-04 12:44:40,997 | INFO     | [job] control thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,083 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,493 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,645 | INFO     | [data] copytool_in thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,658 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,683 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,683 | INFO     | [data] copytool_out thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,775 | INFO     | [job] validate thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,783 | INFO     | [payload] control thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:41,793 | INFO     | [payload] failed_post thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:44:43,639 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 13:45:35] 2026-02-04 12:45:09,543 | INFO     | PID=3773552 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 13:45:35] 2026-02-04 12:45:09,544 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 13:45:35] 2026-02-04 12:45:09,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 13:45:35] 2026-02-04 12:45:09,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 13:45:35] 2026-02-04 12:45:29,321 | INFO     | [monitor] cgroup control has ended
[2026-02-04 13:45:35] 2026-02-04 12:45:29,968 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952502486848)>', '<ExcThread(monitor, started 139952004245248)>']
[2026-02-04 13:45:35] 2026-02-04 12:45:30,653 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 13:45:35] 2026-02-04 12:45:30,654 | INFO     | [monitor] control thread has ended
[2026-02-04 13:45:35] 2026-02-04 12:45:34,994 | INFO     | all workflow threads have been joined
[2026-02-04 13:45:35] 2026-02-04 12:45:34,995 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 13:45:35] 2026-02-04 12:45:34,995 | INFO     | traces error code: 0
[2026-02-04 13:45:35] 2026-02-04 12:45:34,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 13:45:35] 2026-02-04 12:45:35,044 [wrapper] ==== pilot stdout END ====
[2026-02-04 13:45:35] 2026-02-04 12:45:35,047 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 13:45:35] 2026-02-04 12:45:35,050 [wrapper] pilotpid: 3773552
[2026-02-04 13:45:35] 2026-02-04 12:45:35,053 [wrapper] Pilot exit status: 0
[2026-02-04 13:45:35] 2026-02-04 12:45:35,060 [wrapper] pandaids: 6998621445
[2026-02-04 13:45:35] 2026-02-04 12:45:35,077 [wrapper] cleanup supervisor_pilot 3783793 3773553
[2026-02-04 13:45:35] 2026-02-04 12:45:35,080 [wrapper] Test setup, not cleaning
[2026-02-04 13:45:35] 2026-02-04 12:45:35,082 [wrapper] apfmon messages muted
[2026-02-04 13:45:35] 2026-02-04 12:45:35,085 [wrapper] ==== wrapper stdout END ====
[2026-02-04 13:45:35] 2026-02-04 12:45:35,088 [wrapper] ==== wrapper stderr END ====
[2026-02-04 13:45:35]  *** Error codes and diagnostics ***
[2026-02-04 13:45:35]     "exeErrorCode": 0,
[2026-02-04 13:45:35]     "exeErrorDiag": "",
[2026-02-04 13:45:35]     "pilotErrorCode": 0,
[2026-02-04 13:45:35]     "pilotErrorDiag": "",
[2026-02-04 13:45:35]  *** Listing of results directory ***
[2026-02-04 13:45:35] total 950504
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc    584422 Feb  3 06:37 pilot3.tar.gz
[2026-02-04 13:45:35] -rwx------ 1 boinc boinc     36322 Feb  3 06:39 runpilot2-wrapper.sh
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc      5111 Feb  3 06:41 queuedata.json
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc       100 Feb  4 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 13:45:35] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 11:28 run_atlas
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc       105 Feb  4 11:28 job.xml
[2026-02-04 13:45:35] -rw-r--r-- 2 boinc boinc 679104655 Feb  4 11:28 EVNT.48431094._000105.pool.root.1
[2026-02-04 13:45:35] -rw-r--r-- 2 boinc boinc    597774 Feb  4 11:28 input.tar.gz
[2026-02-04 13:45:35] -rw-r--r-- 2 boinc boinc     15845 Feb  4 11:28 start_atlas.sh
[2026-02-04 13:45:35] drwxrwx--x 2 boinc boinc      4096 Feb  4 11:28 shared
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc         0 Feb  4 11:28 boinc_setup_complete
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc      6199 Feb  4 11:28 init_data.xml
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc         0 Feb  4 11:28 boinc_lockfile
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc      2554 Feb  4 11:28 pandaJob.out
[2026-02-04 13:45:35] -rw------- 1 boinc boinc   1009236 Feb  4 11:29 agis_schedconf.cvmfs.json
[2026-02-04 13:45:35] -rw------- 1 boinc boinc   1511668 Feb  4 11:29 agis_ddmendpoints.agis.ALL.json
[2026-02-04 13:45:35] -rw------- 1 boinc boinc       431 Feb  4 11:29 workernode_map.json
[2026-02-04 13:45:35] drwx------ 5 boinc boinc      4096 Feb  4 11:29 pilot3
[2026-02-04 13:45:35] -rw------- 1 boinc boinc 287305077 Feb  4 13:44 HITS.48431096._003857.pool.root.1
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc       530 Feb  4 13:44 boinc_task_state.xml
[2026-02-04 13:45:35] -rw------- 1 boinc boinc      1014 Feb  4 13:44 memory_monitor_summary.json
[2026-02-04 13:45:35] -rw------- 1 boinc boinc    324912 Feb  4 13:44 log.48431096._003857.job.log.tgz.1
[2026-02-04 13:45:35] -rw------- 1 boinc boinc      6317 Feb  4 13:44 heartbeat.json
[2026-02-04 13:45:35] -rw------- 1 boinc boinc        95 Feb  4 13:45 pilot_heartbeat.json
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc      8192 Feb  4 13:45 boinc_mmap_file
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc        27 Feb  4 13:45 wrapper_checkpoint.txt
[2026-02-04 13:45:35] -rw------- 1 boinc boinc      4748 Feb  4 13:45 pilotlog.txt
[2026-02-04 13:45:35] -rw------- 1 boinc boinc   1162658 Feb  4 13:45 log.48431096._003857.job.log.1
[2026-02-04 13:45:35] -rw------- 1 boinc boinc       357 Feb  4 13:45 output.list
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc       620 Feb  4 13:45 runtime_log
[2026-02-04 13:45:35] -rw------- 1 boinc boinc   1505280 Feb  4 13:45 result.tar.gz
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc      8916 Feb  4 13:45 runtime_log.err
[2026-02-04 13:45:35] -rw------- 1 boinc boinc       661 Feb  4 13:45 UnmNDmBJO78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm4RUKDmz2GaFo.diag
[2026-02-04 13:45:35] -rw-r--r-- 1 boinc boinc     11743 Feb  4 13:45 stderr.txt
[2026-02-04 13:45:35] HITS file was successfully produced:
[2026-02-04 13:45:35] -rw------- 1 boinc boinc 287305077 Feb  4 13:44 shared/HITS.pool.root.1
[2026-02-04 13:45:35]  *** Contents of shared directory: ***
[2026-02-04 13:45:35] total 945844
[2026-02-04 13:45:35] -rw-r--r-- 2 boinc boinc 679104655 Feb  4 11:28 ATLAS.root_0
[2026-02-04 13:45:35] -rw-r--r-- 2 boinc boinc    597774 Feb  4 11:28 input.tar.gz
[2026-02-04 13:45:35] -rw-r--r-- 2 boinc boinc     15845 Feb  4 11:28 start_atlas.sh
[2026-02-04 13:45:35] -rw------- 1 boinc boinc 287305077 Feb  4 13:44 HITS.pool.root.1
[2026-02-04 13:45:35] -rw------- 1 boinc boinc   1505280 Feb  4 13:45 result.tar.gz
13:45:36 (3769496): run_atlas exited; CPU time 23623.827249
13:45:36 (3769496): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN