Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:58:30 (1539318): wrapper (7.7.26015): starting
13:58:30 (1539318): wrapper: running run_atlas (--nthreads 3)
[2026-02-04 13:58:30] Arguments: --nthreads 3
[2026-02-04 13:58:30] Threads: 3
[2026-02-04 13:58:30] Checking for CVMFS
[2026-02-04 13:58:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 13:58:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 13:58:31] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 13:58:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 13:58:31] 2.9.2.0 1077466 2909 80724 155866 0 188 25700413 36864001 0 130560 0 1199239 99.981 110261 3555 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-04 13:58:31] CVMFS is ok
[2026-02-04 13:58:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 13:58:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 13:58:31] Further information can be found at the LHC@home message board.
[2026-02-04 13:58:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 13:58:31] Checking for apptainer binary...
[2026-02-04 13:58:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-04 13:58:31] Running /usr/bin/apptainer --version
[2026-02-04 13:58:31] apptainer version 1.4.1-1.1
[2026-02-04 13:58:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 13:58:31] magicA246a
[2026-02-04 13:58:31] apptainer works
[2026-02-04 13:58:31] Set ATHENA_PROC_NUMBER=3
[2026-02-04 13:58:31] Set ATHENA_CORE_NUMBER=3
[2026-02-04 13:58:31] Starting ATLAS job with PandaID=6994345767
[2026-02-04 13:58:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 15:26:10]  *** The last 200 lines of the pilot log: ***
[2026-02-04 15:26:10] 2026-02-04 14:25:38,585 | INFO     | process IDs to be killed: [1547783] (in reverse order)
[2026-02-04 15:26:10] 2026-02-04 14:25:38,615 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 15:26:10] 2026-02-04 14:25:38,615 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 15:26:10] 2026-02-04 14:25:38,617 | INFO     | did not find any defunct processes belonging to 1547783
[2026-02-04 15:26:10] 2026-02-04 14:25:38,618 | INFO     | did not find any defunct processes belonging to 1547783
[2026-02-04 15:26:10] 2026-02-04 14:25:38,618 | INFO     | ready for new job
[2026-02-04 15:26:10] 2026-02-04 14:25:38,618 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 15:26:10] 2026-02-04 14:25:38,619 | INFO     | **************************************
[2026-02-04 15:26:10] 2026-02-04 14:25:38,619 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 15:26:10] 2026-02-04 14:25:38,619 | INFO     | **************************************
[2026-02-04 15:26:10] 2026-02-04 14:25:38,619 | INFO     | 
[2026-02-04 15:26:10] 2026-02-04 14:25:38,620 | INFO     | architecture information:
[2026-02-04 15:26:10] 2026-02-04 14:25:38,620 | INFO     | executing command: cat /etc/os-release
[2026-02-04 15:26:10] 2026-02-04 14:25:38,629 | INFO     | cat /etc/os-release:
[2026-02-04 15:26:10] NAME="CentOS Linux"
[2026-02-04 15:26:10] VERSION="7 (Core)"
[2026-02-04 15:26:10] ID="centos"
[2026-02-04 15:26:10] ID_LIKE="rhel fedora"
[2026-02-04 15:26:10] VERSION_ID="7"
[2026-02-04 15:26:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 15:26:10] ANSI_COLOR="0;31"
[2026-02-04 15:26:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 15:26:10] HOME_URL="https://www.centos.org/"
[2026-02-04 15:26:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 15:26:10] 
[2026-02-04 15:26:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 15:26:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 15:26:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 15:26:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 15:26:10] 
[2026-02-04 15:26:10] 2026-02-04 14:25:38,629 | INFO     | **************************************
[2026-02-04 15:26:10] 2026-02-04 14:25:39,132 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-04 15:26:10] 2026-02-04 14:25:39,143 | INFO     | sufficient remaining disk space (279476961280 B)
[2026-02-04 15:26:10] 2026-02-04 14:25:39,143 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 15:26:10] 2026-02-04 14:25:39,143 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 15:26:10] 2026-02-04 14:25:39,144 | INFO     | update_server=False
[2026-02-04 15:26:10] 2026-02-04 14:25:39,144 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 15:26:10] 2026-02-04 14:25:39,144 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 15:26:10] 2026-02-04 14:25:39,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 15:26:10] 2026-02-04 14:25:39,557 | INFO     | all payload control threads have been joined
[2026-02-04 15:26:10] 2026-02-04 14:25:39,720 | WARNING  | process 1547783 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 15:26:10] 2026-02-04 14:25:39,759 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 15:26:10] 2026-02-04 14:25:39,804 | INFO     | all data control threads have been joined
[2026-02-04 15:26:10] 2026-02-04 14:25:39,809 | INFO     | number of running child processes to parent process 1547783: 1
[2026-02-04 15:26:10] 2026-02-04 14:25:39,809 | INFO     | maximum number of monitored processes: 6
[2026-02-04 15:26:10] 2026-02-04 14:25:39,809 | INFO     | aborting job monitoring since job object (job id=6994345767) has expired
[2026-02-04 15:26:10] 2026-02-04 14:25:39,809 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 15:26:10] 2026-02-04 14:25:39,809 | INFO     | will abort loop
[2026-02-04 15:26:10] 2026-02-04 14:25:40,146 | INFO     | [job] retrieve thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:40,149 | INFO     | [job] queue monitor thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:40,153 | INFO     | [data] copytool_in thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:40,276 | INFO     | [payload] validate_post thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:40,410 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 15:26:10] 2026-02-04 14:25:40,417 | INFO     | all job control threads have been joined
[2026-02-04 15:26:10] 2026-02-04 14:25:40,491 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:40,563 | INFO     | [payload] control thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:40,580 | INFO     | [payload] failed_post thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:40,808 | INFO     | [data] control thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:40,815 | INFO     | [job] job monitor thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:41,407 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:41,407 | INFO     | [job] validate thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:41,422 | INFO     | [job] control thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:41,530 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:41,551 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:42,416 | INFO     | [data] copytool_out thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:43,150 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 15:26:10] 2026-02-04 14:25:45,813 | INFO     | [monitor] cgroup control has ended
[2026-02-04 15:26:10] 2026-02-04 14:25:46,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102293915456)>', '<ExcThread(monitor, started 140101808015104)>']
[2026-02-04 15:26:10] 2026-02-04 14:25:51,778 | INFO     | all workflow threads have been joined
[2026-02-04 15:26:10] 2026-02-04 14:25:51,778 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 15:26:10] 2026-02-04 14:25:51,778 | INFO     | traces error code: 0
[2026-02-04 15:26:10] 2026-02-04 14:25:51,778 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 15:26:10] 2026-02-04 14:26:09,873 | INFO     | PID=1543354 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 15:26:10] 2026-02-04 14:26:09,874 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 15:26:10] 2026-02-04 14:26:09,874 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 15:26:10] 2026-02-04 14:26:09,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 15:26:10] 2026-02-04 14:26:09,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 15:26:10] 2026-02-04 14:26:09,874 | INFO     | [monitor] control thread has ended
[2026-02-04 15:26:10] 2026-02-04 14:26:09,922 [wrapper] ==== pilot stdout END ====
[2026-02-04 15:26:10] 2026-02-04 14:26:09,925 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 15:26:10] 2026-02-04 14:26:09,927 [wrapper] pilotpid: 1543354
[2026-02-04 15:26:10] 2026-02-04 14:26:09,929 [wrapper] Pilot exit status: 0
[2026-02-04 15:26:10] 2026-02-04 14:26:09,937 [wrapper] pandaids: 6994345767
[2026-02-04 15:26:10] 2026-02-04 14:26:09,955 [wrapper] cleanup supervisor_pilot 1554002 1543355
[2026-02-04 15:26:10] 2026-02-04 14:26:09,958 [wrapper] Test setup, not cleaning
[2026-02-04 15:26:10] 2026-02-04 14:26:09,960 [wrapper] apfmon messages muted
[2026-02-04 15:26:10] 2026-02-04 14:26:09,963 [wrapper] ==== wrapper stdout END ====
[2026-02-04 15:26:10] 2026-02-04 14:26:09,965 [wrapper] ==== wrapper stderr END ====
[2026-02-04 15:26:10]  *** Error codes and diagnostics ***
[2026-02-04 15:26:10]     "exeErrorCode": 0,
[2026-02-04 15:26:10]     "exeErrorDiag": "",
[2026-02-04 15:26:10]     "pilotErrorCode": 0,
[2026-02-04 15:26:10]     "pilotErrorDiag": "",
[2026-02-04 15:26:10]  *** Listing of results directory ***
[2026-02-04 15:26:10] total 666280
[2026-02-04 15:26:10] -rwx------ 1 boinc boinc     36322 Feb  3 21:02 runpilot2-wrapper.sh
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc      5111 Feb  3 21:04 queuedata.json
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc    584422 Feb  3 21:04 pilot3.tar.gz
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc       100 Feb  4 13:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 15:26:10] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 13:58 run_atlas
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc       105 Feb  4 13:58 job.xml
[2026-02-04 15:26:10] -rw-r--r-- 2 boinc boinc 493628680 Feb  4 13:58 EVNT.48318040._000166.pool.root.1
[2026-02-04 15:26:10] -rw-r--r-- 2 boinc boinc    597770 Feb  4 13:58 input.tar.gz
[2026-02-04 15:26:10] -rw-r--r-- 2 boinc boinc     15845 Feb  4 13:58 start_atlas.sh
[2026-02-04 15:26:10] drwxrwx--x 2 boinc boinc      4096 Feb  4 13:58 shared
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc         0 Feb  4 13:58 boinc_setup_complete
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc      6447 Feb  4 13:58 init_data.xml
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc         0 Feb  4 13:58 boinc_lockfile
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc      2536 Feb  4 13:58 pandaJob.out
[2026-02-04 15:26:10] -rw------- 1 boinc boinc   1009228 Feb  4 13:58 agis_schedconf.cvmfs.json
[2026-02-04 15:26:10] -rw------- 1 boinc boinc   1511668 Feb  4 13:58 agis_ddmendpoints.agis.ALL.json
[2026-02-04 15:26:10] -rw------- 1 boinc boinc       428 Feb  4 13:58 workernode_map.json
[2026-02-04 15:26:10] drwx------ 5 boinc boinc      4096 Feb  4 13:58 pilot3
[2026-02-04 15:26:10] -rw------- 1 boinc boinc 182616243 Feb  4 15:25 HITS.48318042._008560.pool.root.1
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc       530 Feb  4 15:25 boinc_task_state.xml
[2026-02-04 15:26:10] -rw------- 1 boinc boinc      1011 Feb  4 15:25 memory_monitor_summary.json
[2026-02-04 15:26:10] -rw------- 1 boinc boinc    289319 Feb  4 15:25 log.48318042._008560.job.log.tgz.1
[2026-02-04 15:26:10] -rw------- 1 boinc boinc      6303 Feb  4 15:25 heartbeat.json
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc        27 Feb  4 15:25 wrapper_checkpoint.txt
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc      8192 Feb  4 15:25 boinc_mmap_file
[2026-02-04 15:26:10] -rw------- 1 boinc boinc       747 Feb  4 15:26 pilotlog.txt
[2026-02-04 15:26:10] -rw------- 1 boinc boinc        95 Feb  4 15:26 pilot_heartbeat.json
[2026-02-04 15:26:10] -rw------- 1 boinc boinc    761974 Feb  4 15:26 log.48318042._008560.job.log.1
[2026-02-04 15:26:10] -rw------- 1 boinc boinc       357 Feb  4 15:26 output.list
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc       620 Feb  4 15:26 runtime_log
[2026-02-04 15:26:10] -rw------- 1 boinc boinc   1064960 Feb  4 15:26 result.tar.gz
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc      8916 Feb  4 15:26 runtime_log.err
[2026-02-04 15:26:10] -rw------- 1 boinc boinc       661 Feb  4 15:26 m73LDmgmb78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmfpVKDm72AaBo.diag
[2026-02-04 15:26:10] -rw-r--r-- 1 boinc boinc     10719 Feb  4 15:26 stderr.txt
[2026-02-04 15:26:10] HITS file was successfully produced:
[2026-02-04 15:26:10] -rw------- 1 boinc boinc 182616243 Feb  4 15:25 shared/HITS.pool.root.1
[2026-02-04 15:26:10]  *** Contents of shared directory: ***
[2026-02-04 15:26:10] total 662048
[2026-02-04 15:26:10] -rw-r--r-- 2 boinc boinc 493628680 Feb  4 13:58 ATLAS.root_0
[2026-02-04 15:26:10] -rw-r--r-- 2 boinc boinc    597770 Feb  4 13:58 input.tar.gz
[2026-02-04 15:26:10] -rw-r--r-- 2 boinc boinc     15845 Feb  4 13:58 start_atlas.sh
[2026-02-04 15:26:10] -rw------- 1 boinc boinc 182616243 Feb  4 15:25 HITS.pool.root.1
[2026-02-04 15:26:10] -rw------- 1 boinc boinc   1064960 Feb  4 15:26 result.tar.gz
15:26:11 (1539318): run_atlas exited; CPU time 14983.901932
15:26:11 (1539318): called boinc_finish(0)

</stderr_txt>
]]>

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