Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:40:27 (85557): wrapper (7.7.26015): starting
09:40:27 (85557): wrapper: running run_atlas (--nthreads 6)
[2026-02-05 09:40:27] Arguments: --nthreads 6
[2026-02-05 09:40:27] Threads: 6
[2026-02-05 09:40:27] Checking for CVMFS
[2026-02-05 09:40:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-05 09:40:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-05 09:40:32] Running cvmfs_config stat atlas.cern.ch
[2026-02-05 09:40:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-05 09:40:32] 2.13.3.0 71593 109 49928 155883 3 50 41838083 52428801 0 130560 0 45525 99.959 6899 160 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-05 09:40:32] CVMFS is ok
[2026-02-05 09:40:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-05 09:40:32] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-05 09:40:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-05 09:40:32] Further information can be found at the LHC@home message board.
[2026-02-05 09:40:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-05 09:40:32] Checking for apptainer binary...
[2026-02-05 09:40:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-05 09:40:32] Running /usr/bin/apptainer --version
[2026-02-05 09:40:32] apptainer version 1.4.5-2.el9
[2026-02-05 09:40:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-05 09:40:32] Atto003
[2026-02-05 09:40:32] apptainer works
[2026-02-05 09:40:32] Set ATHENA_PROC_NUMBER=6
[2026-02-05 09:40:32] Set ATHENA_CORE_NUMBER=6
[2026-02-05 09:40:32] Starting ATLAS job with PandaID=7000018732
[2026-02-05 09:40:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 11:30:38]  *** The last 200 lines of the pilot log: ***
[2026-02-05 11:30:38] 2026-02-05 02:30:06,255 | INFO     | maximum number of monitored processes: 6
[2026-02-05 11:30:38] 2026-02-05 02:30:06,458 | INFO     | job 7000018732 has state=finished
[2026-02-05 11:30:38] 2026-02-05 02:30:06,458 | INFO     | preparing for final server update for job 7000018732 in state='finished'
[2026-02-05 11:30:38] 2026-02-05 02:30:06,459 | INFO     | reading metadata from: /var/lib/boinc/slots/3/PanDA_Pilot-7000018732/jobReport.json
[2026-02-05 11:30:38] 2026-02-05 02:30:06,460 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/3/workernode_map.json
[2026-02-05 11:30:38] 2026-02-05 02:30:06,460 | INFO     | this job has now completed (state=finished)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,460 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,460 | INFO     | log transfer has been attempted: DONE
[2026-02-05 11:30:38] 2026-02-05 02:30:06,461 | INFO     | job 7000018732 has finished - writing final server update
[2026-02-05 11:30:38] 2026-02-05 02:30:06,461 | INFO     | total number of processed events: 400 (read)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,463 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-7000018732/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,464 | INFO     | extracted standard info from prmon json
[2026-02-05 11:30:38] 2026-02-05 02:30:06,464 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 11:30:38] 2026-02-05 02:30:06,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 11:30:38] 2026-02-05 02:30:06,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 11:30:38] 2026-02-05 02:30:06,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 11:30:38] 2026-02-05 02:30:06,466 | INFO     | fitting pss+swap vs Time
[2026-02-05 11:30:38] 2026-02-05 02:30:06,466 | INFO     | sum of square deviations: 379832238.0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,466 | INFO     | sum of deviations: -5084698736.999998
[2026-02-05 11:30:38] 2026-02-05 02:30:06,466 | INFO     | mean x: 1770255311.0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,466 | INFO     | mean y: 2536105.7196261683
[2026-02-05 11:30:38] 2026-02-05 02:30:06,467 | INFO     | intersect: 23700405963.75216
[2026-02-05 11:30:38] 2026-02-05 02:30:06,467 | INFO     | chi2: 1.880581690622099
[2026-02-05 11:30:38] 2026-02-05 02:30:06,467 | INFO     | sum of square deviations: 329031285.5
[2026-02-05 11:30:38] 2026-02-05 02:30:06,467 | INFO     | sum of deviations: -4423408472.999999
[2026-02-05 11:30:38] 2026-02-05 02:30:06,467 | INFO     | mean x: 1770255158.5
[2026-02-05 11:30:38] 2026-02-05 02:30:06,468 | INFO     | mean y: 2538092.1960784313
[2026-02-05 11:30:38] 2026-02-05 02:30:06,468 | INFO     | intersect: 23801374289.737106
[2026-02-05 11:30:38] 2026-02-05 02:30:06,468 | INFO     | chi2: 1.88042458246531
[2026-02-05 11:30:38] 2026-02-05 02:30:06,468 | INFO     | current chi2=1.88042458246531 (change=0.008354231968346426 %)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,468 | INFO     | right removable region: 101
[2026-02-05 11:30:38] 2026-02-05 02:30:06,468 | INFO     | sum of square deviations: 329031285.5
[2026-02-05 11:30:38] 2026-02-05 02:30:06,468 | INFO     | sum of deviations: -22025505673.499996
[2026-02-05 11:30:38] 2026-02-05 02:30:06,469 | INFO     | mean x: 1770255463.5
[2026-02-05 11:30:38] 2026-02-05 02:30:06,469 | INFO     | mean y: 2585847.382352941
[2026-02-05 11:30:38] 2026-02-05 02:30:06,469 | INFO     | intersect: 118504301256.03342
[2026-02-05 11:30:38] 2026-02-05 02:30:06,469 | INFO     | chi2: 0.20869509157993135
[2026-02-05 11:30:38] 2026-02-05 02:30:06,469 | INFO     | current chi2=0.20869509157993135 (change=88.90263089231212 %)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,469 | INFO     | sum of square deviations: 282974608.0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,470 | INFO     | sum of deviations: -18879749001.999996
[2026-02-05 11:30:38] 2026-02-05 02:30:06,470 | INFO     | mean x: 1770255616.0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,470 | INFO     | mean y: 2575317.412371134
[2026-02-05 11:30:38] 2026-02-05 02:30:06,470 | INFO     | intersect: 118112047879.91483
[2026-02-05 11:30:38] 2026-02-05 02:30:06,470 | INFO     | chi2: 0.20282855027185723
[2026-02-05 11:30:38] 2026-02-05 02:30:06,470 | INFO     | current chi2=0.20282855027185723 (change=2.811058594460142 %)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,470 | INFO     | left removable region: 20
[2026-02-05 11:30:38] 2026-02-05 02:30:06,470 | INFO     | sum of square deviations: 164765880.0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,471 | INFO     | sum of deviations: -9208283791.999998
[2026-02-05 11:30:38] 2026-02-05 02:30:06,471 | INFO     | mean x: 1770255738.0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,471 | INFO     | mean y: 2543759.24691358
[2026-02-05 11:30:38] 2026-02-05 02:30:06,471 | INFO     | intersect: 98936966468.12569
[2026-02-05 11:30:38] 2026-02-05 02:30:06,471 | INFO     | chi2: 0.16312135812899767
[2026-02-05 11:30:38] 2026-02-05 02:30:06,471 | INFO     | current memory leak: -55.89 B/s (using 81 data points, chi2=0.16)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,471 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | ..............................
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | . Timing measurements:
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | . get job = 0 s
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | . initial setup = 9 s
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | . payload setup = 4 s
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | . stage-in = 0 s
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | . payload execution = 6524 s
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | . stage-out = 0 s
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | . log creation = 0 s
[2026-02-05 11:30:38] 2026-02-05 02:30:06,472 | INFO     | ..............................
[2026-02-05 11:30:38] 2026-02-05 02:30:06,542 | INFO     | 
[2026-02-05 11:30:38] 2026-02-05 02:30:06,542 | INFO     | job summary report
[2026-02-05 11:30:38] 2026-02-05 02:30:06,542 | INFO     | --------------------------------------------------
[2026-02-05 11:30:38] 2026-02-05 02:30:06,542 | INFO     | PanDA job id: 7000018732
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | task id: 48317892
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | errors: (none)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | pilot state: finished 
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | transexitcode: 0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | exeerrorcode: 0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | exeerrordiag: 
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | exitcode: 0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | exitmsg: OK
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | cpuconsumptiontime: 36718 s
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | nevents: 400
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | neventsw: 0
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | pid: 94398
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | pgrp: 94398
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | corecount: 6
[2026-02-05 11:30:38] 2026-02-05 02:30:06,543 | INFO     | event service: False
[2026-02-05 11:30:38] 2026-02-05 02:30:06,544 | INFO     | sizes: {0: 2278225, 11: 2278225, 6532: 2305392, 6533: 2314390, 6534: 2314446, 6537: 2314640}
[2026-02-05 11:30:38] 2026-02-05 02:30:06,544 | INFO     | --------------------------------------------------
[2026-02-05 11:30:38] 2026-02-05 02:30:06,544 | INFO     | 
[2026-02-05 11:30:38] 2026-02-05 02:30:06,544 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,557 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | job 7000018732 has completed (purged errors)
[2026-02-05 11:30:38] 2026-02-05 02:30:06,558 | INFO     | overall cleanup function is called
[2026-02-05 11:30:38] 2026-02-05 02:30:07,565 | INFO     | --- collectZombieJob: --- 10, [94398]
[2026-02-05 11:30:38] 2026-02-05 02:30:07,565 | INFO     | zombie collector waiting for pid 94398
[2026-02-05 11:30:38] 2026-02-05 02:30:07,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 11:30:38] 2026-02-05 02:30:07,565 | INFO     | collected zombie processes
[2026-02-05 11:30:38] 2026-02-05 02:30:07,565 | INFO     | will attempt to kill all subprocesses of pid=94398
[2026-02-05 11:30:38] 2026-02-05 02:30:07,640 | INFO     | process IDs to be killed: [94398] (in reverse order)
[2026-02-05 11:30:38] 2026-02-05 02:30:07,668 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 11:30:38] 2026-02-05 02:30:07,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 11:30:38] 2026-02-05 02:30:07,671 | INFO     | did not find any defunct processes belonging to 94398
[2026-02-05 11:30:38] 2026-02-05 02:30:07,673 | INFO     | did not find any defunct processes belonging to 94398
[2026-02-05 11:30:38] 2026-02-05 02:30:07,673 | INFO     | ready for new job
[2026-02-05 11:30:38] 2026-02-05 02:30:07,673 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 11:30:38] 2026-02-05 02:30:07,674 | INFO     | **************************************
[2026-02-05 11:30:38] 2026-02-05 02:30:07,674 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 11:30:38] 2026-02-05 02:30:07,674 | INFO     | **************************************
[2026-02-05 11:30:38] 2026-02-05 02:30:07,674 | INFO     | 
[2026-02-05 11:30:38] 2026-02-05 02:30:07,675 | INFO     | architecture information:
[2026-02-05 11:30:38] 2026-02-05 02:30:07,675 | INFO     | executing command: cat /etc/os-release
[2026-02-05 11:30:38] 2026-02-05 02:30:07,684 | INFO     | cat /etc/os-release:
[2026-02-05 11:30:38] NAME="CentOS Linux"
[2026-02-05 11:30:38] VERSION="7 (Core)"
[2026-02-05 11:30:38] ID="centos"
[2026-02-05 11:30:38] ID_LIKE="rhel fedora"
[2026-02-05 11:30:38] VERSION_ID="7"
[2026-02-05 11:30:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 11:30:38] ANSI_COLOR="0;31"
[2026-02-05 11:30:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 11:30:38] HOME_URL="https://www.centos.org/"
[2026-02-05 11:30:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 11:30:38] 
[2026-02-05 11:30:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 11:30:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 11:30:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 11:30:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 11:30:38] 
[2026-02-05 11:30:38] 2026-02-05 02:30:07,684 | INFO     | **************************************
[2026-02-05 11:30:38] 2026-02-05 02:30:08,187 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-02-05 11:30:38] 2026-02-05 02:30:08,197 | INFO     | sufficient remaining disk space (116854358016 B)
[2026-02-05 11:30:38] 2026-02-05 02:30:08,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 11:30:38] 2026-02-05 02:30:08,197 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 11:30:38] 2026-02-05 02:30:08,197 | INFO     | update_server=False
[2026-02-05 11:30:38] 2026-02-05 02:30:08,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 11:30:38] 2026-02-05 02:30:08,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 11:30:38] 2026-02-05 02:30:08,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 11:30:38] 2026-02-05 02:30:08,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 11:30:38] 2026-02-05 02:30:08,198 | INFO     | aborting loop
[2026-02-05 11:30:38] 2026-02-05 02:30:08,895 | INFO     | [monitor] cgroup control has ended
[2026-02-05 11:30:38] 2026-02-05 02:30:08,940 | INFO     | all payload control threads have been joined
[2026-02-05 11:30:38] 2026-02-05 02:30:09,082 | INFO     | all data control threads have been joined
[2026-02-05 11:30:38] 2026-02-05 02:30:09,202 | INFO     | [job] retrieve thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:09,203 | INFO     | [job] queue monitor thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:09,203 | INFO     | [job] job monitor thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:09,259 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:09,325 | INFO     | [payload] validate_post thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:09,551 | INFO     | all job control threads have been joined
[2026-02-05 11:30:38] 2026-02-05 02:30:09,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 11:30:38] 2026-02-05 02:30:09,945 | INFO     | [payload] control thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:10,087 | INFO     | [data] control thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:10,203 | INFO     | [data] copytool_out thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:10,288 | INFO     | [payload] failed_post thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:10,352 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:10,426 | INFO     | [job] validate thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:10,495 | INFO     | [data] copytool_in thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:10,526 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:10,556 | INFO     | [job] control thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:13,705 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:18,723 | INFO     | job.realtimelogging is not enabled
[2026-02-05 11:30:38] 2026-02-05 02:30:19,728 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 11:30:38] 2026-02-05 02:30:20,717 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139891520702272)>', '<ExcThread(monitor, started 139891144898304)>']
[2026-02-05 11:30:38] 2026-02-05 02:30:25,742 | INFO     | all workflow threads have been joined
[2026-02-05 11:30:38] 2026-02-05 02:30:25,742 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 11:30:38] 2026-02-05 02:30:25,742 | INFO     | traces error code: 0
[2026-02-05 11:30:38] 2026-02-05 02:30:25,742 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 11:30:38] 2026-02-05 02:30:38,599 | INFO     | PID=89742 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-05 11:30:38] 2026-02-05 02:30:38,599 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 11:30:38] 2026-02-05 02:30:38,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 11:30:38] 2026-02-05 02:30:38,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 11:30:38] 2026-02-05 02:30:38,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 11:30:38] 2026-02-05 02:30:38,600 | CRITICAL | thread 'MainThread' is not alive
[2026-02-05 11:30:38] 2026-02-05 02:30:38,600 | INFO     | [monitor] control thread has ended
[2026-02-05 11:30:38] 2026-02-05 02:30:38,678 [wrapper] ==== pilot stdout END ====
[2026-02-05 11:30:38] 2026-02-05 02:30:38,680 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 11:30:38] 2026-02-05 02:30:38,682 [wrapper] pilotpid: 89742
[2026-02-05 11:30:38] 2026-02-05 02:30:38,684 [wrapper] Pilot exit status: 0
[2026-02-05 11:30:38] 2026-02-05 02:30:38,689 [wrapper] pandaids: 7000018732
[2026-02-05 11:30:38] 2026-02-05 02:30:38,711 [wrapper] cleanup supervisor_pilot   99427 89743
[2026-02-05 11:30:38] 2026-02-05 02:30:38,712 [wrapper] Test setup, not cleaning
[2026-02-05 11:30:38] 2026-02-05 02:30:38,714 [wrapper] apfmon messages muted
[2026-02-05 11:30:38] 2026-02-05 02:30:38,717 [wrapper] ==== wrapper stdout END ====
[2026-02-05 11:30:38] 2026-02-05 02:30:38,719 [wrapper] ==== wrapper stderr END ====
[2026-02-05 11:30:38]  *** Error codes and diagnostics ***
[2026-02-05 11:30:38]     "exeErrorCode": 0,
[2026-02-05 11:30:38]     "exeErrorDiag": "",
[2026-02-05 11:30:38]     "pilotErrorCode": 0,
[2026-02-05 11:30:38]     "pilotErrorDiag": "",
[2026-02-05 11:30:38]  *** Listing of results directory ***
[2026-02-05 11:30:38] total 668172
[2026-02-05 11:30:38] -rwx------. 1 boinc boinc     36322 Feb  4 05:02 runpilot2-wrapper.sh
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc      5111 Feb  4 05:04 queuedata.json
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc    584422 Feb  4 05:04 pilot3.tar.gz
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc       100 Feb  5 09:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 11:30:38] -rwxr-xr-x. 1 boinc boinc      7986 Feb  5 09:40 run_atlas
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc       105 Feb  5 09:40 job.xml
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc      6559 Feb  5 09:40 init_data.xml
[2026-02-05 11:30:38] -rw-r--r--. 2 boinc boinc 491990736 Feb  5 09:40 EVNT.48317889._000250.pool.root.1
[2026-02-05 11:30:38] -rw-r--r--. 2 boinc boinc     15845 Feb  5 09:40 start_atlas.sh
[2026-02-05 11:30:38] drwxrwx--x. 2 boinc boinc        68 Feb  5 09:40 shared
[2026-02-05 11:30:38] -rw-r--r--. 2 boinc boinc    597753 Feb  5 09:40 input.tar.gz
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc         0 Feb  5 09:40 boinc_lockfile
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc      2523 Feb  5 09:40 pandaJob.out
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc   1009544 Feb  5 09:40 agis_schedconf.cvmfs.json
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc   1511668 Feb  5 09:40 agis_ddmendpoints.agis.ALL.json
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc       426 Feb  5 09:40 workernode_map.json
[2026-02-05 11:30:38] drwx------. 5 boinc boinc      4096 Feb  5 09:40 pilot3
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc 185731577 Feb  5 11:29 HITS.48317892._013099.pool.root.1
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc        95 Feb  5 11:29 pilot_heartbeat.json
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc      1015 Feb  5 11:29 memory_monitor_summary.json
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc    340038 Feb  5 11:30 log.48317892._013099.job.log.tgz.1
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc      6316 Feb  5 11:30 heartbeat.json
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc       530 Feb  5 11:30 boinc_task_state.xml
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc      8192 Feb  5 11:30 boinc_mmap_file
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc        27 Feb  5 11:30 wrapper_checkpoint.txt
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc       815 Feb  5 11:30 pilotlog.txt
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc    938943 Feb  5 11:30 log.48317892._013099.job.log.1
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc       357 Feb  5 11:30 output.list
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc       620 Feb  5 11:30 runtime_log
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc   1300480 Feb  5 11:30 result.tar.gz
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc       640 Feb  5 11:30 vwBNDmSmb78n9Rq4apOajLDm4fhM0noT9bVooX4SDmzMVKDm2MXAkn.diag
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc      8764 Feb  5 11:30 runtime_log.err
[2026-02-05 11:30:38] -rw-r--r--. 1 boinc boinc     21223 Feb  5 11:30 stderr.txt
[2026-02-05 11:30:38] HITS file was successfully produced:
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc 185731577 Feb  5 11:29 shared/HITS.pool.root.1
[2026-02-05 11:30:38]  *** Contents of shared directory: ***
[2026-02-05 11:30:38] total 663712
[2026-02-05 11:30:38] -rw-r--r--. 2 boinc boinc 491990736 Feb  5 09:40 ATLAS.root_0
[2026-02-05 11:30:38] -rw-r--r--. 2 boinc boinc     15845 Feb  5 09:40 start_atlas.sh
[2026-02-05 11:30:38] -rw-r--r--. 2 boinc boinc    597753 Feb  5 09:40 input.tar.gz
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc 185731577 Feb  5 11:29 HITS.pool.root.1
[2026-02-05 11:30:38] -rw-------. 1 boinc boinc   1300480 Feb  5 11:30 result.tar.gz
11:30:39 (85557): run_atlas exited; CPU time 36800.231992
11:30:39 (85557): called boinc_finish(0)

</stderr_txt>
]]>

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