Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:04:44 (1121881): wrapper (7.7.26015): starting
07:04:44 (1121881): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 07:04:44] Arguments: --nthreads 4
[2026-02-04 07:04:44] Threads: 4
[2026-02-04 07:04:44] Checking for CVMFS
[2026-02-04 07:04:44] No cvmfs_config command found, will try listing directly
[2026-02-04 07:04:44] CVMFS is ok
[2026-02-04 07:04:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 07:04:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 07:04:44] Further information can be found at the LHC@home message board.
[2026-02-04 07:04:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 07:04:44] Checking for apptainer binary...
[2026-02-04 07:04:44] which: no apptainer in ((null))
[2026-02-04 07:04:44] apptainer is not installed, using version from CVMFS
[2026-02-04 07:04:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 07:04:45] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-02-04 07:04:45] apptainer works
[2026-02-04 07:04:45] Set ATHENA_PROC_NUMBER=4
[2026-02-04 07:04:45] Set ATHENA_CORE_NUMBER=4
[2026-02-04 07:04:45] Starting ATLAS job with PandaID=7000018694
[2026-02-04 07:04:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 09:54:19]  *** The last 200 lines of the pilot log: ***
[2026-02-04 09:54:19] 2026-02-04 08:52:39,909 | INFO     | maximum number of monitored processes: 6
[2026-02-04 09:54:19] 2026-02-04 08:52:40,184 | INFO     | job 7000018694 has state=finished
[2026-02-04 09:54:19] 2026-02-04 08:52:40,184 | INFO     | preparing for final server update for job 7000018694 in state='finished'
[2026-02-04 09:54:19] 2026-02-04 08:52:40,184 | INFO     | reading metadata from: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-7000018694/jobReport.json
[2026-02-04 09:54:19] 2026-02-04 08:52:40,186 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot72/slots/0/workernode_map.json
[2026-02-04 09:54:19] 2026-02-04 08:52:40,187 | INFO     | this job has now completed (state=finished)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,187 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,187 | INFO     | log transfer has been attempted: DONE
[2026-02-04 09:54:19] 2026-02-04 08:52:40,187 | INFO     | job 7000018694 has finished - writing final server update
[2026-02-04 09:54:19] 2026-02-04 08:52:40,187 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_177050/.job.ad'
[2026-02-04 09:54:19] 2026-02-04 08:52:40,188 | INFO     | total number of processed events: 400 (read)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,211 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-7000018694/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,212 | INFO     | extracted standard info from prmon json
[2026-02-04 09:54:19] 2026-02-04 08:52:40,212 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 09:54:19] 2026-02-04 08:52:40,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 09:54:19] 2026-02-04 08:52:40,212 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 09:54:19] 2026-02-04 08:52:40,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 09:54:19] 2026-02-04 08:52:40,215 | INFO     | fitting pss+swap vs Time
[2026-02-04 09:54:19] 2026-02-04 08:52:40,216 | INFO     | sum of square deviations: 1392881930.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,217 | INFO     | sum of deviations: 17965625328.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,217 | INFO     | mean x: 1770190121.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,217 | INFO     | mean y: 2310568.8181818184
[2026-02-04 09:54:19] 2026-02-04 08:52:40,217 | INFO     | intersect: -22829899246.13217
[2026-02-04 09:54:19] 2026-02-04 08:52:40,217 | INFO     | chi2: 1.0838636602657097
[2026-02-04 09:54:19] 2026-02-04 08:52:40,217 | INFO     | sum of square deviations: 1270051720.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,218 | INFO     | sum of deviations: 17259218823.5
[2026-02-04 09:54:19] 2026-02-04 08:52:40,218 | INFO     | mean x: 1770189968.5
[2026-02-04 09:54:19] 2026-02-04 08:52:40,219 | INFO     | mean y: 2309693.98125
[2026-02-04 09:54:19] 2026-02-04 08:52:40,219 | INFO     | intersect: -24053479172.243877
[2026-02-04 09:54:19] 2026-02-04 08:52:40,219 | INFO     | chi2: 1.0845764448320712
[2026-02-04 09:54:19] 2026-02-04 08:52:40,219 | INFO     | current chi2=1.0845764448320712 (change=-0.06576330515470369 %)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,219 | INFO     | right removable region: 159
[2026-02-04 09:54:19] 2026-02-04 08:52:40,219 | INFO     | sum of square deviations: 1270051720.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,220 | INFO     | sum of deviations: 2808646607.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,220 | INFO     | mean x: 1770190273.5
[2026-02-04 09:54:19] 2026-02-04 08:52:40,220 | INFO     | mean y: 2328998.3125
[2026-02-04 09:54:19] 2026-02-04 08:52:40,221 | INFO     | intersect: -3912345362.6735053
[2026-02-04 09:54:19] 2026-02-04 08:52:40,221 | INFO     | chi2: 0.0009389871440611854
[2026-02-04 09:54:19] 2026-02-04 08:52:40,221 | INFO     | current chi2=0.0009389871440611854 (change=99.91336667345863 %)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,221 | INFO     | sum of square deviations: 1154663510.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,222 | INFO     | sum of deviations: 2889328867.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,222 | INFO     | mean x: 1770190426.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,222 | INFO     | mean y: 2328890.941935484
[2026-02-04 09:54:19] 2026-02-04 08:52:40,222 | INFO     | intersect: -4427240636.139445
[2026-02-04 09:54:19] 2026-02-04 08:52:40,223 | INFO     | chi2: 0.0007342347019211108
[2026-02-04 09:54:19] 2026-02-04 08:52:40,223 | INFO     | current chi2=0.0007342347019211108 (change=21.805670443421178 %)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,223 | INFO     | left removable region: 20
[2026-02-04 09:54:19] 2026-02-04 08:52:40,223 | INFO     | sum of square deviations: 832722590.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,224 | INFO     | sum of deviations: 1473177266.9999998
[2026-02-04 09:54:19] 2026-02-04 08:52:40,224 | INFO     | mean x: 1770190548.0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,224 | INFO     | mean y: 2330343.5395683455
[2026-02-04 09:54:19] 2026-02-04 08:52:40,224 | INFO     | intersect: -3129330193.7011375
[2026-02-04 09:54:19] 2026-02-04 08:52:40,224 | INFO     | chi2: 0.00015672597263958186
[2026-02-04 09:54:19] 2026-02-04 08:52:40,224 | INFO     | current memory leak: 1.77 B/s (using 139 data points, chi2=0.00)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | could have reported an average CPU frequency of 2769 MHz (9 samples)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | ..............................
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | . Timing measurements:
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | . get job = 0 s
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | . initial setup = 5 s
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | . payload setup = 5 s
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | . stage-in = 0 s
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | . payload execution = 10035 s
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | . stage-out = 0 s
[2026-02-04 09:54:19] 2026-02-04 08:52:40,225 | INFO     | . log creation = 0 s
[2026-02-04 09:54:19] 2026-02-04 08:52:40,226 | INFO     | ..............................
[2026-02-04 09:54:19] 2026-02-04 08:52:40,330 | INFO     | 
[2026-02-04 09:54:19] 2026-02-04 08:52:40,331 | INFO     | job summary report
[2026-02-04 09:54:19] 2026-02-04 08:52:40,331 | INFO     | --------------------------------------------------
[2026-02-04 09:54:19] 2026-02-04 08:52:40,331 | INFO     | PanDA job id: 7000018694
[2026-02-04 09:54:19] 2026-02-04 08:52:40,331 | INFO     | task id: 48317892
[2026-02-04 09:54:19] 2026-02-04 08:52:40,331 | INFO     | errors: (none)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,331 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 09:54:19] 2026-02-04 08:52:40,331 | INFO     | pilot state: finished 
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | transexitcode: 0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | exeerrorcode: 0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | exeerrordiag: 
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | exitcode: 0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | exitmsg: OK
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | cpuconsumptiontime: 38897 s
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | nevents: 400
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | neventsw: 0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | pid: 1131486
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | pgrp: 1131486
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | corecount: 4
[2026-02-04 09:54:19] 2026-02-04 08:52:40,332 | INFO     | event service: False
[2026-02-04 09:54:19] 2026-02-04 08:52:40,333 | INFO     | sizes: {0: 2278236, 11: 2278236, 10044: 2307510, 10046: 2316530, 10048: 2316586, 10051: 2316844}
[2026-02-04 09:54:19] 2026-02-04 08:52:40,333 | INFO     | --------------------------------------------------
[2026-02-04 09:54:19] 2026-02-04 08:52:40,333 | INFO     | 
[2026-02-04 09:54:19] 2026-02-04 08:52:40,333 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/0
[2026-02-04 09:54:19] 2026-02-04 08:52:40,369 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,369 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,370 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 09:54:19] 2026-02-04 08:52:40,371 | INFO     | job 7000018694 has completed (purged errors)
[2026-02-04 09:54:19] 2026-02-04 08:52:40,372 | INFO     | overall cleanup function is called
[2026-02-04 09:54:19] 2026-02-04 08:52:41,377 | INFO     | --- collectZombieJob: --- 10, [1131486]
[2026-02-04 09:54:19] 2026-02-04 08:52:41,378 | INFO     | zombie collector waiting for pid 1131486
[2026-02-04 09:54:19] 2026-02-04 08:52:41,378 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 09:54:19] 2026-02-04 08:52:41,378 | INFO     | collected zombie processes
[2026-02-04 09:54:19] 2026-02-04 08:52:41,378 | INFO     | will attempt to kill all subprocesses of pid=1131486
[2026-02-04 09:54:19] 2026-02-04 08:52:42,082 | INFO     | process IDs to be killed: [1131486] (in reverse order)
[2026-02-04 09:54:19] 2026-02-04 08:52:42,323 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 09:54:19] 2026-02-04 08:52:42,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 09:54:19] 2026-02-04 08:52:42,352 | INFO     | did not find any defunct processes belonging to 1131486
[2026-02-04 09:54:19] 2026-02-04 08:52:42,375 | INFO     | did not find any defunct processes belonging to 1131486
[2026-02-04 09:54:19] 2026-02-04 08:52:42,376 | INFO     | ready for new job
[2026-02-04 09:54:19] 2026-02-04 08:52:42,376 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 09:54:19] 2026-02-04 08:52:42,378 | INFO     | **************************************
[2026-02-04 09:54:19] 2026-02-04 08:52:42,378 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 09:54:19] 2026-02-04 08:52:42,379 | INFO     | **************************************
[2026-02-04 09:54:19] 2026-02-04 08:52:42,379 | INFO     | 
[2026-02-04 09:54:19] 2026-02-04 08:52:42,387 | INFO     | architecture information:
[2026-02-04 09:54:19] 2026-02-04 08:52:42,387 | INFO     | executing command: cat /etc/os-release
[2026-02-04 09:54:19] 2026-02-04 08:52:42,413 | INFO     | cat /etc/os-release:
[2026-02-04 09:54:19] NAME="CentOS Linux"
[2026-02-04 09:54:19] VERSION="7 (Core)"
[2026-02-04 09:54:19] ID="centos"
[2026-02-04 09:54:19] ID_LIKE="rhel fedora"
[2026-02-04 09:54:19] VERSION_ID="7"
[2026-02-04 09:54:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 09:54:19] ANSI_COLOR="0;31"
[2026-02-04 09:54:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 09:54:19] HOME_URL="https://www.centos.org/"
[2026-02-04 09:54:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 09:54:19] 
[2026-02-04 09:54:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 09:54:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 09:54:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 09:54:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 09:54:19] 
[2026-02-04 09:54:19] 2026-02-04 08:52:42,413 | INFO     | **************************************
[2026-02-04 09:54:19] 2026-02-04 08:52:42,916 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/0
[2026-02-04 09:54:19] 2026-02-04 08:52:42,944 | INFO     | sufficient remaining disk space (3217208377344 B)
[2026-02-04 09:54:19] 2026-02-04 08:52:42,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 09:54:19] 2026-02-04 08:52:42,945 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 09:54:19] 2026-02-04 08:52:42,945 | INFO     | update_server=False
[2026-02-04 09:54:19] 2026-02-04 08:52:42,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 09:54:19] 2026-02-04 08:52:43,180 | INFO     | all job control threads have been joined
[2026-02-04 09:54:19] 2026-02-04 08:52:43,416 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 09:54:19] 2026-02-04 08:52:43,417 | INFO     | aborting loop
[2026-02-04 09:54:19] 2026-02-04 08:52:43,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 09:54:19] 2026-02-04 08:52:43,920 | INFO     | all data control threads have been joined
[2026-02-04 09:54:19] 2026-02-04 08:52:43,950 | INFO     | [job] retrieve thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:43,994 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,171 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 09:54:19] 2026-02-04 08:52:44,185 | INFO     | [job] control thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,239 | INFO     | all payload control threads have been joined
[2026-02-04 09:54:19] 2026-02-04 08:52:44,252 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,310 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,368 | INFO     | [payload] failed_post thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,422 | INFO     | [job] job monitor thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,547 | INFO     | [job] validate thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,710 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,887 | INFO     | [payload] validate_post thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:44,925 | INFO     | [data] control thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:45,126 | INFO     | [data] copytool_in thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:45,244 | INFO     | [payload] control thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:45,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 09:54:19] 2026-02-04 08:52:45,439 | INFO     | [data] copytool_out thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:46,338 | INFO     | [job] queue monitor thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:52:48,176 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 09:54:19] 2026-02-04 08:53:13,068 | INFO     | PID=1125884 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-04 09:54:19] 2026-02-04 08:53:13,071 | INFO     | .. there are 14 such processes running
[2026-02-04 09:54:19] 2026-02-04 08:53:13,072 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 09:54:19] 2026-02-04 08:53:13,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 09:54:19] 2026-02-04 08:53:13,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 09:54:19] 2026-02-04 08:53:14,287 | INFO     | [monitor] cgroup control has ended
[2026-02-04 09:54:19] 2026-02-04 08:53:16,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23211788830528)>', '<ExcThread(monitor, started 23211550193408)>']
[2026-02-04 09:54:19] 2026-02-04 08:53:17,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 09:54:19] 2026-02-04 08:53:17,090 | INFO     | [monitor] control thread has ended
[2026-02-04 09:54:19] 2026-02-04 08:53:21,192 | INFO     | all workflow threads have been joined
[2026-02-04 09:54:19] 2026-02-04 08:53:21,192 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 09:54:19] 2026-02-04 08:53:21,193 | INFO     | traces error code: 0
[2026-02-04 09:54:19] 2026-02-04 08:53:21,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 09:54:19] 2026-02-04 08:53:21,360 [wrapper] ==== pilot stdout END ====
[2026-02-04 09:54:19] 2026-02-04 08:53:21,363 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 09:54:19] 2026-02-04 08:53:21,366 [wrapper] pilotpid: 1125884
[2026-02-04 09:54:19] 2026-02-04 08:53:21,371 [wrapper] Pilot exit status: 0
[2026-02-04 09:54:19] 2026-02-04 08:53:21,385 [wrapper] pandaids: 7000018694
[2026-02-04 09:54:19] 2026-02-04 08:53:21,530 [wrapper] cleanup supervisor_pilot 1492570 1125885
[2026-02-04 09:54:19] 2026-02-04 08:53:21,535 [wrapper] Test setup, not cleaning
[2026-02-04 09:54:19] 2026-02-04 08:53:21,539 [wrapper] apfmon messages muted
[2026-02-04 09:54:19] 2026-02-04 08:53:21,543 [wrapper] ==== wrapper stdout END ====
[2026-02-04 09:54:19] 2026-02-04 08:53:21,548 [wrapper] ==== wrapper stderr END ====
[2026-02-04 09:54:19]  *** Error codes and diagnostics ***
[2026-02-04 09:54:19]     "exeErrorCode": 0,
[2026-02-04 09:54:19]     "exeErrorDiag": "",
[2026-02-04 09:54:19]     "pilotErrorCode": 0,
[2026-02-04 09:54:19]     "pilotErrorDiag": "",
[2026-02-04 09:54:19]  *** Listing of results directory ***
[2026-02-04 09:54:19] total 673112
[2026-02-04 09:54:19] -rwx------ 1 boinc boinc     36322 Feb  3 21:02 runpilot2-wrapper.sh
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc      5111 Feb  3 21:04 queuedata.json
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc    584422 Feb  3 21:04 pilot3.tar.gz
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc       100 Feb  4 05:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 09:54:19] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 05:45 run_atlas
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc       105 Feb  4 05:45 job.xml
[2026-02-04 09:54:19] -rw-r--r-- 2 boinc boinc 495636971 Feb  4 07:04 EVNT.48317889._000249.pool.root.1
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc      6686 Feb  4 07:04 init_data.xml
[2026-02-04 09:54:19] -rw-r--r-- 2 boinc boinc     15845 Feb  4 07:04 start_atlas.sh
[2026-02-04 09:54:19] drwxrwx--x 2 boinc boinc      4096 Feb  4 07:04 shared
[2026-02-04 09:54:19] -rw-r--r-- 2 boinc boinc    597757 Feb  4 07:04 input.tar.gz
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc         0 Feb  4 07:04 boinc_lockfile
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc      2523 Feb  4 07:04 pandaJob.out
[2026-02-04 09:54:19] -rw------- 1 boinc boinc   1009236 Feb  4 07:04 agis_schedconf.cvmfs.json
[2026-02-04 09:54:19] -rw------- 1 boinc boinc   1511668 Feb  4 07:04 agis_ddmendpoints.agis.ALL.json
[2026-02-04 09:54:19] -rw------- 1 boinc boinc       443 Feb  4 07:04 workernode_map.json
[2026-02-04 09:54:19] drwx------ 5 boinc boinc      4096 Feb  4 07:04 pilot3
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc       530 Feb  4 09:52 boinc_task_state.xml
[2026-02-04 09:54:19] -rw------- 1 boinc boinc 186098622 Feb  4 09:52 HITS.48317892._013061.pool.root.1
[2026-02-04 09:54:19] -rw------- 1 boinc boinc      1029 Feb  4 09:52 memory_monitor_summary.json
[2026-02-04 09:54:19] -rw------- 1 boinc boinc    373375 Feb  4 09:52 log.48317892._013061.job.log.tgz.1
[2026-02-04 09:54:19] -rw------- 1 boinc boinc      6354 Feb  4 09:52 heartbeat.json
[2026-02-04 09:54:19] -rw------- 1 boinc boinc        95 Feb  4 09:53 pilot_heartbeat.json
[2026-02-04 09:54:19] -rw------- 1 boinc boinc      4832 Feb  4 09:53 pilotlog.txt
[2026-02-04 09:54:19] -rw------- 1 boinc boinc   1416789 Feb  4 09:53 log.48317892._013061.job.log.1
[2026-02-04 09:54:19] -rw------- 1 boinc boinc       357 Feb  4 09:53 output.list
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc       620 Feb  4 09:53 runtime_log
[2026-02-04 09:54:19] -rw------- 1 boinc boinc   1812480 Feb  4 09:53 result.tar.gz
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc      9205 Feb  4 09:53 runtime_log.err
[2026-02-04 09:54:19] -rw------- 1 boinc boinc       664 Feb  4 09:53 R3pMDmSmb78n9Rq4apOajLDm4fhM0noT9bVooX4SDmiMVKDmaCQIEo.diag
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc        27 Feb  4 09:54 wrapper_checkpoint.txt
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc      8192 Feb  4 09:54 boinc_mmap_file
[2026-02-04 09:54:19] -rw-r--r-- 1 boinc boinc     21096 Feb  4 09:54 stderr.txt
[2026-02-04 09:54:19] HITS file was successfully produced:
[2026-02-04 09:54:19] -rw------- 1 boinc boinc 186098622 Feb  4 09:52 shared/HITS.pool.root.1
[2026-02-04 09:54:19]  *** Contents of shared directory: ***
[2026-02-04 09:54:19] total 668144
[2026-02-04 09:54:19] -rw-r--r-- 2 boinc boinc 495636971 Feb  4 07:04 ATLAS.root_0
[2026-02-04 09:54:19] -rw-r--r-- 2 boinc boinc     15845 Feb  4 07:04 start_atlas.sh
[2026-02-04 09:54:19] -rw-r--r-- 2 boinc boinc    597757 Feb  4 07:04 input.tar.gz
[2026-02-04 09:54:19] -rw------- 1 boinc boinc 186098622 Feb  4 09:52 HITS.pool.root.1
[2026-02-04 09:54:19] -rw------- 1 boinc boinc   1812480 Feb  4 09:53 result.tar.gz
09:54:20 (1121881): run_atlas exited; CPU time 39546.211266
09:54:20 (1121881): called boinc_finish(0)

</stderr_txt>
]]>

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