Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:24:19 (2803917): wrapper (7.7.26015): starting
18:24:19 (2803917): wrapper: running run_atlas (--nthreads 12)
[2026-02-04 18:24:19] Arguments: --nthreads 12
[2026-02-04 18:24:19] Threads: 12
[2026-02-04 18:24:19] Checking for CVMFS
[2026-02-04 18:24:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-04 18:24:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-04 18:24:19] Running cvmfs_config stat atlas.cern.ch
[2026-02-04 18:24:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-04 18:24:19] 2.13.1.0 2787 14569 78924 155874 1 188 2435026 4096001 1780 130560 0 20708724 99.986 736557 1044 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-02-04 18:24:19] CVMFS is ok
[2026-02-04 18:24:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 18:24:19] Checking for apptainer binary...
[2026-02-04 18:24:19] apptainer is not installed, using version from CVMFS
[2026-02-04 18:24:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 18:24:19] ryzen7
[2026-02-04 18:24:19] apptainer works
[2026-02-04 18:24:19] Set ATHENA_PROC_NUMBER=12
[2026-02-04 18:24:19] Set ATHENA_CORE_NUMBER=12
[2026-02-04 18:24:19] Starting ATLAS job with PandaID=6976663187
[2026-02-04 18:24:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31418/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 19:42:42]  *** The last 200 lines of the pilot log: ***
[2026-02-04 19:42:42]  is_altstaged=None
[2026-02-04 19:42:42]  is_tar=False
[2026-02-04 19:42:42]  lfn=log.48298225._000351.job.log.tgz.1
[2026-02-04 19:42:42]  mtime=0
[2026-02-04 19:42:42]  protocol_id=None
[2026-02-04 19:42:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-04 19:42:42]  replicas=None
[2026-02-04 19:42:42]  scope=mc23_13p6TeV
[2026-02-04 19:42:42]  status=None
[2026-02-04 19:42:42]  status_code=0
[2026-02-04 19:42:42]  storage_token=
[2026-02-04 19:42:42]  surl=/opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6976663187/log.48298225._000351.job.log.tgz.1
[2026-02-04 19:42:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/7d/log.48298225._000351.job.log.tgz.1
[2026-02-04 19:42:42]  workdir=None
[2026-02-04 19:42:42] ]
[2026-02-04 19:42:42] 2026-02-04 19:41:45,052 | INFO     | transferring file log.48298225._000351.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6976663187/log.48298225._000351.job.log.tgz.1 t
[2026-02-04 19:42:42] 2026-02-04 19:41:45,052 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6976663187/log.48298225._000351.job.log.tgz.1 /opt/boinc/instance_home
[2026-02-04 19:42:42] 2026-02-04 19:41:45,146 | INFO     | adding to output.list: log.48298225._000351.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/7d/log.48298225._000351.job.log.tg
[2026-02-04 19:42:42] 2026-02-04 19:41:45,146 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-04 19:42:42] 2026-02-04 19:41:45,146 | INFO     | summary of transferred files:
[2026-02-04 19:42:42] 2026-02-04 19:41:45,146 | INFO     |  -- lfn=log.48298225._000351.job.log.tgz.1, status_code=0, status=transferred
[2026-02-04 19:42:42] 2026-02-04 19:41:45,146 | INFO     | stage-out finished correctly
[2026-02-04 19:42:42] 2026-02-04 19:41:45,974 | INFO     | time since job start (4638s) is within the limit (349056.0s)
[2026-02-04 19:42:42] 2026-02-04 19:41:47,002 | INFO     | monitor loop #352: job 0:6976663187 is in state 'finished'
[2026-02-04 19:42:42] 2026-02-04 19:41:47,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-04 19:42:42] 2026-02-04 19:41:47,150 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-04 19:42:42] 2026-02-04 19:41:47,982 | INFO     | time since job start (4640s) is within the limit (349056.0s)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,518 | INFO     | monitor loop #353: job 0:6976663187 is in state 'finished'
[2026-02-04 19:42:42] 2026-02-04 19:41:49,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,754 | INFO     | job 6976663187 has state=finished
[2026-02-04 19:42:42] 2026-02-04 19:41:49,754 | INFO     | preparing for final server update for job 6976663187 in state='finished'
[2026-02-04 19:42:42] 2026-02-04 19:41:49,754 | INFO     | reading metadata from: /opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6976663187/jobReport.json
[2026-02-04 19:42:42] 2026-02-04 19:41:49,755 | INFO     | added worker_node to metadata from /opt/boinc/instance_homes/boinc_31418/slots/2/workernode_map.json
[2026-02-04 19:42:42] 2026-02-04 19:41:49,756 | INFO     | this job has now completed (state=finished)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,756 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,756 | INFO     | log transfer has been attempted: DONE
[2026-02-04 19:42:42] 2026-02-04 19:41:49,756 | INFO     | job 6976663187 has finished - writing final server update
[2026-02-04 19:42:42] 2026-02-04 19:41:49,756 | INFO     | total number of processed events: 400 (read)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,776 | INFO     | using path: /opt/boinc/instance_homes/boinc_31418/slots/2/PanDA_Pilot-6976663187/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,776 | INFO     | extracted standard info from prmon json
[2026-02-04 19:42:42] 2026-02-04 19:41:49,776 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 19:42:42] 2026-02-04 19:41:49,776 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 19:42:42] 2026-02-04 19:41:49,776 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 19:42:42] 2026-02-04 19:41:49,776 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 19:42:42] 2026-02-04 19:41:49,777 | INFO     | fitting pss+swap vs Time
[2026-02-04 19:42:42] 2026-02-04 19:41:49,777 | INFO     | sum of square deviations: 101843770.0
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | sum of deviations: -4126316208.000001
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | mean x: 1770231862.0
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | mean y: 2774992.8695652173
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | intersect: 71725732853.60686
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | chi2: 0.013293618296187547
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | current memory leak: -40.52 B/s (using 69 data points, chi2=0.01)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | could have reported an average CPU frequency of 4178 MHz (6 samples)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | ..............................
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | . Timing measurements:
[2026-02-04 19:42:42] 2026-02-04 19:41:49,782 | INFO     | . get job = 0 s
[2026-02-04 19:42:42] 2026-02-04 19:41:49,783 | INFO     | . initial setup = 3 s
[2026-02-04 19:42:42] 2026-02-04 19:41:49,783 | INFO     | . payload setup = 2 s
[2026-02-04 19:42:42] 2026-02-04 19:41:49,783 | INFO     | . stage-in = 0 s
[2026-02-04 19:42:42] 2026-02-04 19:41:49,783 | INFO     | . payload execution = 4618 s
[2026-02-04 19:42:42] 2026-02-04 19:41:49,783 | INFO     | . stage-out = 1 s
[2026-02-04 19:42:42] 2026-02-04 19:41:49,783 | INFO     | . log creation = 0 s
[2026-02-04 19:42:42] 2026-02-04 19:41:49,783 | INFO     | ..............................
[2026-02-04 19:42:42] 2026-02-04 19:41:49,897 | INFO     | 
[2026-02-04 19:42:42] 2026-02-04 19:41:49,897 | INFO     | job summary report
[2026-02-04 19:42:42] 2026-02-04 19:41:49,897 | INFO     | --------------------------------------------------
[2026-02-04 19:42:42] 2026-02-04 19:41:49,897 | INFO     | PanDA job id: 6976663187
[2026-02-04 19:42:42] 2026-02-04 19:41:49,897 | INFO     | task id: 48298225
[2026-02-04 19:42:42] 2026-02-04 19:41:49,897 | INFO     | errors: (none)
[2026-02-04 19:42:42] 2026-02-04 19:41:49,897 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 19:42:42] 2026-02-04 19:41:49,897 | INFO     | pilot state: finished 
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | transexitcode: 0
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | exeerrorcode: 0
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | exeerrordiag: 
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | exitcode: 0
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | exitmsg: OK
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | cpuconsumptiontime: 23590 s
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | nevents: 400
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | neventsw: 0
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | pid: 2812186
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | pgrp: 2812186
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | corecount: 12
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | event service: False
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | sizes: {0: 2278423, 11: 2278423, 4624: 2304713, 4627: 2313757, 4629: 2313813, 4631: 2314007}
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | --------------------------------------------------
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | 
[2026-02-04 19:42:42] 2026-02-04 19:41:49,898 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31418/slots/2
[2026-02-04 19:42:42] 2026-02-04 19:41:49,994 | INFO     | time since job start (4642s) is within the limit (349056.0s)
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,066 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | job 6976663187 has completed (purged errors)
[2026-02-04 19:42:42] 2026-02-04 19:41:50,067 | INFO     | overall cleanup function is called
[2026-02-04 19:42:42] 2026-02-04 19:41:51,074 | INFO     | --- collectZombieJob: --- 10, [2812186]
[2026-02-04 19:42:42] 2026-02-04 19:41:51,074 | INFO     | zombie collector waiting for pid 2812186
[2026-02-04 19:42:42] 2026-02-04 19:41:51,074 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 19:42:42] 2026-02-04 19:41:51,074 | INFO     | collected zombie processes
[2026-02-04 19:42:42] 2026-02-04 19:41:51,074 | INFO     | will attempt to kill all subprocesses of pid=2812186
[2026-02-04 19:42:42] 2026-02-04 19:41:51,177 | INFO     | process IDs to be killed: [2812186] (in reverse order)
[2026-02-04 19:42:42] 2026-02-04 19:41:51,274 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 19:42:42] 2026-02-04 19:41:51,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 19:42:42] 2026-02-04 19:41:51,276 | INFO     | did not find any defunct processes belonging to 2812186
[2026-02-04 19:42:42] 2026-02-04 19:41:51,278 | INFO     | did not find any defunct processes belonging to 2812186
[2026-02-04 19:42:42] 2026-02-04 19:41:51,278 | INFO     | ready for new job
[2026-02-04 19:42:42] 2026-02-04 19:41:51,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 19:42:42] 2026-02-04 19:41:51,279 | INFO     | **************************************
[2026-02-04 19:42:42] 2026-02-04 19:41:51,279 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 19:42:42] 2026-02-04 19:41:51,279 | INFO     | **************************************
[2026-02-04 19:42:42] 2026-02-04 19:41:51,279 | INFO     | 
[2026-02-04 19:42:42] 2026-02-04 19:41:51,302 | INFO     | architecture information:
[2026-02-04 19:42:42] 2026-02-04 19:41:51,302 | INFO     | executing command: cat /etc/os-release
[2026-02-04 19:42:42] 2026-02-04 19:41:51,346 | INFO     | cat /etc/os-release:
[2026-02-04 19:42:42] NAME="CentOS Linux"
[2026-02-04 19:42:42] VERSION="7 (Core)"
[2026-02-04 19:42:42] ID="centos"
[2026-02-04 19:42:42] ID_LIKE="rhel fedora"
[2026-02-04 19:42:42] VERSION_ID="7"
[2026-02-04 19:42:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 19:42:42] ANSI_COLOR="0;31"
[2026-02-04 19:42:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 19:42:42] HOME_URL="https://www.centos.org/"
[2026-02-04 19:42:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 19:42:42] 
[2026-02-04 19:42:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 19:42:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 19:42:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 19:42:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 19:42:42] 
[2026-02-04 19:42:42] 2026-02-04 19:41:51,346 | INFO     | **************************************
[2026-02-04 19:42:42] 2026-02-04 19:41:51,850 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31418/slots/2
[2026-02-04 19:42:42] 2026-02-04 19:41:51,934 | INFO     | sufficient remaining disk space (172234899456 B)
[2026-02-04 19:42:42] 2026-02-04 19:41:51,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 19:42:42] 2026-02-04 19:41:51,934 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 19:42:42] 2026-02-04 19:41:51,934 | INFO     | update_server=False
[2026-02-04 19:42:42] 2026-02-04 19:41:51,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 19:42:42] 2026-02-04 19:41:51,934 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-04 19:42:42] 2026-02-04 19:41:51,934 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 19:42:42] 2026-02-04 19:41:51,934 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 19:42:42] 2026-02-04 19:41:51,935 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 19:42:42] 2026-02-04 19:41:52,030 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-04 19:42:42] 2026-02-04 19:41:52,030 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-04 19:42:42] 2026-02-04 19:41:52,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 19:42:42] 2026-02-04 19:41:52,030 | INFO     | will abort loop
[2026-02-04 19:42:42] 2026-02-04 19:41:52,050 | INFO     | all payload control threads have been joined
[2026-02-04 19:42:42] 2026-02-04 19:41:52,246 | INFO     | all job control threads have been joined
[2026-02-04 19:42:42] 2026-02-04 19:41:52,942 | INFO     | [job] retrieve thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:53,038 | INFO     | [job] job monitor thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:53,058 | INFO     | [payload] control thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:53,058 | INFO     | all data control threads have been joined
[2026-02-04 19:42:42] 2026-02-04 19:41:53,254 | INFO     | [job] control thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:53,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 19:42:42] 2026-02-04 19:41:53,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 19:42:42] 2026-02-04 19:41:53,386 | INFO     | [payload] validate_post thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:53,858 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:54,062 | INFO     | [data] control thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:54,078 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:54,218 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:54,218 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:54,218 | INFO     | [job] validate thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:54,286 | INFO     | [data] copytool_in thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:54,498 | INFO     | [payload] failed_post thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:54,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 19:42:42] 2026-02-04 19:41:55,334 | INFO     | [data] copytool_out thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:55,926 | INFO     | [job] queue monitor thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:41:57,330 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 19:42:42] 2026-02-04 19:42:34,418 | INFO     | [monitor] cgroup control has ended
[2026-02-04 19:42:42] 2026-02-04 19:42:35,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140664931809088)>', '<ExcThread(monitor, started 140664188688128)>']
[2026-02-04 19:42:42] 2026-02-04 19:42:36,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 19:42:42] 2026-02-04 19:42:36,234 | INFO     | [monitor] control thread has ended
[2026-02-04 19:42:42] 2026-02-04 19:42:40,698 | INFO     | all workflow threads have been joined
[2026-02-04 19:42:42] 2026-02-04 19:42:40,698 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 19:42:42] 2026-02-04 19:42:40,698 | INFO     | traces error code: 0
[2026-02-04 19:42:42] 2026-02-04 19:42:40,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 19:42:42] 2026-02-04 19:42:40,942 [wrapper] ==== pilot stdout END ====
[2026-02-04 19:42:42] 2026-02-04 19:42:40,944 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 19:42:42] 2026-02-04 19:42:40,966 [wrapper] pilotpid: 2807687
[2026-02-04 19:42:42] 2026-02-04 19:42:41,026 [wrapper] Pilot exit status: 0
[2026-02-04 19:42:42] 2026-02-04 19:42:41,274 [wrapper] pandaids: 6976663187
[2026-02-04 19:42:42] 2026-02-04 19:42:41,386 [wrapper] cleanup supervisor_pilot 2830778 2807688
[2026-02-04 19:42:42] 2026-02-04 19:42:41,442 [wrapper] Test setup, not cleaning
[2026-02-04 19:42:42] 2026-02-04 19:42:41,466 [wrapper] apfmon messages muted
[2026-02-04 19:42:42] 2026-02-04 19:42:41,522 [wrapper] ==== wrapper stdout END ====
[2026-02-04 19:42:42] 2026-02-04 19:42:41,574 [wrapper] ==== wrapper stderr END ====
[2026-02-04 19:42:42]  *** Error codes and diagnostics ***
[2026-02-04 19:42:42]     "exeErrorCode": 0,
[2026-02-04 19:42:42]     "exeErrorDiag": "",
[2026-02-04 19:42:42]     "pilotErrorCode": 0,
[2026-02-04 19:42:42]     "pilotErrorDiag": "",
[2026-02-04 19:42:42]  *** Listing of results directory ***
[2026-02-04 19:42:42] total 427344
[2026-02-04 19:42:42] -rw-r--r-- 1 boinc boinc    584422 Jan 20 16:46 pilot3.tar.gz
[2026-02-04 19:42:42] -rw-r--r-- 1 boinc boinc      5111 Jan 20 17:24 queuedata.json
[2026-02-04 19:42:42] -rwx------ 1 boinc boinc     36322 Jan 20 17:24 runpilot2-wrapper.sh
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc       100 Feb  4 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 19:42:42] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 18:24 run_atlas
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc       105 Feb  4 18:24 job.xml
[2026-02-04 19:42:42] -rw-r--r-- 2 boinc boinc     15845 Feb  4 18:24 start_atlas.sh
[2026-02-04 19:42:42] drwxrwx--x 2 boinc boinc      4096 Feb  4 18:24 shared
[2026-02-04 19:42:42] -rw-r--r-- 2 boinc boinc    597777 Feb  4 18:24 input.tar.gz
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc      6463 Feb  4 18:24 init_data.xml
[2026-02-04 19:42:42] -rw-r--r-- 2 boinc boinc 257621283 Feb  4 18:24 EVNT.48298222._000017.pool.root.1
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc         0 Feb  4 18:24 boinc_setup_complete
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc         0 Feb  4 18:24 boinc_lockfile
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc      2617 Feb  4 18:24 pandaJob.out
[2026-02-04 19:42:42] -rw------- 1 boinc boinc   1009536 Feb  4 18:24 agis_schedconf.cvmfs.json
[2026-02-04 19:42:42] -rw------- 1 boinc boinc   1511668 Feb  4 18:24 agis_ddmendpoints.agis.ALL.json
[2026-02-04 19:42:42] -rw------- 1 boinc boinc       419 Feb  4 18:24 workernode_map.json
[2026-02-04 19:42:42] drwx------ 5 boinc boinc      4096 Feb  4 18:24 pilot3
[2026-02-04 19:42:42] -rw------- 1 boinc boinc 173885281 Feb  4 19:41 HITS.48298225._000351.pool.root.1
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc       529 Feb  4 19:41 boinc_task_state.xml
[2026-02-04 19:42:42] -rw------- 1 boinc boinc        95 Feb  4 19:41 pilot_heartbeat.json
[2026-02-04 19:42:42] -rw------- 1 boinc boinc      1015 Feb  4 19:41 memory_monitor_summary.json
[2026-02-04 19:42:42] -rw------- 1 boinc boinc    368520 Feb  4 19:41 log.48298225._000351.job.log.tgz.1
[2026-02-04 19:42:42] -rw------- 1 boinc boinc      6269 Feb  4 19:41 heartbeat.json
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc      8192 Feb  4 19:42 boinc_mmap_file
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc        27 Feb  4 19:42 wrapper_checkpoint.txt
[2026-02-04 19:42:42] -rw------- 1 boinc boinc      4758 Feb  4 19:42 pilotlog.txt
[2026-02-04 19:42:42] -rw------- 1 boinc boinc    706930 Feb  4 19:42 log.48298225._000351.job.log.1
[2026-02-04 19:42:42] -rw------- 1 boinc boinc       357 Feb  4 19:42 output.list
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc       620 Feb  4 19:42 runtime_log
[2026-02-04 19:42:42] -rw------- 1 boinc boinc   1095680 Feb  4 19:42 result.tar.gz
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc      9156 Feb  4 19:42 runtime_log.err
[2026-02-04 19:42:42] -rw------- 1 boinc boinc       648 Feb  4 19:42 P67MDmqdU28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxyvKDmDekTKn.diag
[2026-02-04 19:42:42] -rw-rw-r-- 1 boinc boinc     21295 Feb  4 19:42 stderr.txt
[2026-02-04 19:42:42] HITS file was successfully produced:
[2026-02-04 19:42:42] -rw------- 1 boinc boinc 173885281 Feb  4 19:41 shared/HITS.pool.root.1
[2026-02-04 19:42:42]  *** Contents of shared directory: ***
[2026-02-04 19:42:42] total 423076
[2026-02-04 19:42:42] -rw-r--r-- 2 boinc boinc     15845 Feb  4 18:24 start_atlas.sh
[2026-02-04 19:42:42] -rw-r--r-- 2 boinc boinc    597777 Feb  4 18:24 input.tar.gz
[2026-02-04 19:42:42] -rw-r--r-- 2 boinc boinc 257621283 Feb  4 18:24 ATLAS.root_0
[2026-02-04 19:42:42] -rw------- 1 boinc boinc 173885281 Feb  4 19:41 HITS.pool.root.1
[2026-02-04 19:42:42] -rw------- 1 boinc boinc   1095680 Feb  4 19:42 result.tar.gz
19:42:44 (2803917): run_atlas exited; CPU time 23610.547901
19:42:44 (2803917): called boinc_finish(0)

</stderr_txt>
]]>

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