Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:26:24 (3739634): wrapper (7.7.26015): starting
18:26:24 (3739634): wrapper: running run_atlas (--nthreads 4)
[2026-02-05 18:26:24] Arguments: --nthreads 4
[2026-02-05 18:26:24] Threads: 4
[2026-02-05 18:26:24] Checking for CVMFS
[2026-02-05 18:26:24] No cvmfs_config command found, will try listing directly
[2026-02-05 18:26:24] CVMFS is ok
[2026-02-05 18:26:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-05 18:26:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-05 18:26:24] Further information can be found at the LHC@home message board.
[2026-02-05 18:26:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-05 18:26:24] Checking for apptainer binary...
[2026-02-05 18:26:24] which: no apptainer in ((null))
[2026-02-05 18:26:24] apptainer is not installed, using version from CVMFS
[2026-02-05 18:26:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-05 18:26:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-02-05 18:26:25] apptainer works
[2026-02-05 18:26:25] Set ATHENA_PROC_NUMBER=4
[2026-02-05 18:26:25] Set ATHENA_CORE_NUMBER=4
[2026-02-05 18:26:25] Starting ATLAS job with PandaID=6995419165
[2026-02-05 18:26:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 21:26:31]  *** The last 200 lines of the pilot log: ***
[2026-02-05 21:26:31] 2026-02-05 20:24:02,658 | INFO     | maximum number of monitored processes: 6
[2026-02-05 21:26:31] 2026-02-05 20:24:02,777 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,777 | INFO     | reading metadata from: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6995419165/jobReport.json
[2026-02-05 21:26:31] 2026-02-05 20:24:02,780 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot112/slots/0/workernode_map.json
[2026-02-05 21:26:31] 2026-02-05 20:24:02,780 | INFO     | this job has now completed (state=finished)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,780 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,780 | INFO     | log transfer has been attempted: DONE
[2026-02-05 21:26:31] 2026-02-05 20:24:02,780 | INFO     | job 6995419165 has finished - writing final server update
[2026-02-05 21:26:31] 2026-02-05 20:24:02,781 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1237427/.job.ad'
[2026-02-05 21:26:31] 2026-02-05 20:24:02,781 | INFO     | total number of processed events: 400 (read)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,805 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6995419165/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,805 | INFO     | extracted standard info from prmon json
[2026-02-05 21:26:31] 2026-02-05 20:24:02,805 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 21:26:31] 2026-02-05 20:24:02,805 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 21:26:31] 2026-02-05 20:24:02,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 21:26:31] 2026-02-05 20:24:02,806 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 21:26:31] 2026-02-05 20:24:02,809 | INFO     | fitting pss+swap vs Time
[2026-02-05 21:26:31] 2026-02-05 20:24:02,809 | INFO     | sum of square deviations: 1633472487.5
[2026-02-05 21:26:31] 2026-02-05 20:24:02,810 | INFO     | sum of deviations: -8185592287.500002
[2026-02-05 21:26:31] 2026-02-05 20:24:02,810 | INFO     | mean x: 1770317712.5
[2026-02-05 21:26:31] 2026-02-05 20:24:02,810 | INFO     | mean y: 2356602.3735632184
[2026-02-05 21:26:31] 2026-02-05 20:24:02,810 | INFO     | intersect: 8873702232.469244
[2026-02-05 21:26:31] 2026-02-05 20:24:02,811 | INFO     | chi2: 1.3808297889613559
[2026-02-05 21:26:31] 2026-02-05 20:24:02,811 | INFO     | sum of square deviations: 1496660620.0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,812 | INFO     | sum of deviations: -7697185142.999999
[2026-02-05 21:26:31] 2026-02-05 20:24:02,812 | INFO     | mean x: 1770317560.0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,812 | INFO     | mean y: 2357146.923076923
[2026-02-05 21:26:31] 2026-02-05 20:24:02,812 | INFO     | intersect: 9106934256.210558
[2026-02-05 21:26:31] 2026-02-05 20:24:02,813 | INFO     | chi2: 1.3802755962844775
[2026-02-05 21:26:31] 2026-02-05 20:24:02,813 | INFO     | current chi2=1.3802755962844775 (change=0.04013475674617745 %)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,813 | INFO     | right removable region: 168
[2026-02-05 21:26:31] 2026-02-05 20:24:02,813 | INFO     | sum of square deviations: 1496660620.0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,814 | INFO     | sum of deviations: -28128580897.000004
[2026-02-05 21:26:31] 2026-02-05 20:24:02,814 | INFO     | mean x: 1770317865.0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,814 | INFO     | mean y: 2378450.650887574
[2026-02-05 21:26:31] 2026-02-05 20:24:02,815 | INFO     | intersect: 33274135997.83405
[2026-02-05 21:26:31] 2026-02-05 20:24:02,815 | INFO     | chi2: 0.09974801808514222
[2026-02-05 21:26:31] 2026-02-05 20:24:02,815 | INFO     | current chi2=0.09974801808514222 (change=92.77622637615809 %)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,815 | INFO     | sum of square deviations: 1367709365.0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,816 | INFO     | sum of deviations: -25366475643.0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,816 | INFO     | mean x: 1770318017.5
[2026-02-05 21:26:31] 2026-02-05 20:24:02,816 | INFO     | mean y: 2375179.1097560977
[2026-02-05 21:26:31] 2026-02-05 20:24:02,816 | INFO     | intersect: 32835906936.990055
[2026-02-05 21:26:31] 2026-02-05 20:24:02,817 | INFO     | chi2: 0.09949759685970914
[2026-02-05 21:26:31] 2026-02-05 20:24:02,817 | INFO     | current chi2=0.09949759685970914 (change=0.2510538356955853 %)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,817 | INFO     | left removable region: 20
[2026-02-05 21:26:31] 2026-02-05 20:24:02,817 | INFO     | sum of square deviations: 1005179777.0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,818 | INFO     | sum of deviations: -17542697688.0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,818 | INFO     | mean x: 1770318139.5
[2026-02-05 21:26:31] 2026-02-05 20:24:02,818 | INFO     | mean y: 2367153.189189189
[2026-02-05 21:26:31] 2026-02-05 20:24:02,818 | INFO     | intersect: 30898488069.508728
[2026-02-05 21:26:31] 2026-02-05 20:24:02,818 | INFO     | chi2: 0.09072990666293508
[2026-02-05 21:26:31] 2026-02-05 20:24:02,819 | INFO     | current memory leak: -17.45 B/s (using 148 data points, chi2=0.09)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,819 | INFO     | could have reported an average CPU frequency of 2708 MHz (9 samples)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,819 | INFO     | ..............................
[2026-02-05 21:26:31] 2026-02-05 20:24:02,819 | INFO     | . Timing measurements:
[2026-02-05 21:26:31] 2026-02-05 20:24:02,819 | INFO     | . get job = 0 s
[2026-02-05 21:26:31] 2026-02-05 20:24:02,819 | INFO     | . initial setup = 8 s
[2026-02-05 21:26:31] 2026-02-05 20:24:02,819 | INFO     | . payload setup = 9 s
[2026-02-05 21:26:31] 2026-02-05 20:24:02,820 | INFO     | . stage-in = 0 s
[2026-02-05 21:26:31] 2026-02-05 20:24:02,820 | INFO     | . payload execution = 10605 s
[2026-02-05 21:26:31] 2026-02-05 20:24:02,820 | INFO     | . stage-out = 0 s
[2026-02-05 21:26:31] 2026-02-05 20:24:02,820 | INFO     | . log creation = 0 s
[2026-02-05 21:26:31] 2026-02-05 20:24:02,820 | INFO     | ..............................
[2026-02-05 21:26:31] 2026-02-05 20:24:02,912 | INFO     | 
[2026-02-05 21:26:31] 2026-02-05 20:24:02,912 | INFO     | job summary report
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | --------------------------------------------------
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | PanDA job id: 6995419165
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | task id: 48317892
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | errors: (none)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | pilot state: finished 
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | transexitcode: 0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | exeerrorcode: 0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | exeerrordiag: 
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | exitcode: 0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | exitmsg: OK
[2026-02-05 21:26:31] 2026-02-05 20:24:02,913 | INFO     | cpuconsumptiontime: 40570 s
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | nevents: 400
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | neventsw: 0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | pid: 3759005
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | pgrp: 3759005
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | corecount: 4
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | event service: False
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | sizes: {0: 2282785, 1: 2283047, 11: 2283075, 10619: 2312399, 10621: 2321421, 10622: 2321477, 10623: 2321863}
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | --------------------------------------------------
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | 
[2026-02-05 21:26:31] 2026-02-05 20:24:02,914 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2026-02-05 21:26:31] 2026-02-05 20:24:02,946 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,947 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,947 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,947 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,947 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,949 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,949 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 21:26:31] 2026-02-05 20:24:02,949 | INFO     | job 6995419165 has completed (purged errors)
[2026-02-05 21:26:31] 2026-02-05 20:24:02,949 | INFO     | overall cleanup function is called
[2026-02-05 21:26:31] 2026-02-05 20:24:03,958 | INFO     | --- collectZombieJob: --- 10, [3759005]
[2026-02-05 21:26:31] 2026-02-05 20:24:03,958 | INFO     | zombie collector waiting for pid 3759005
[2026-02-05 21:26:31] 2026-02-05 20:24:03,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 21:26:31] 2026-02-05 20:24:03,959 | INFO     | collected zombie processes
[2026-02-05 21:26:31] 2026-02-05 20:24:03,959 | INFO     | will attempt to kill all subprocesses of pid=3759005
[2026-02-05 21:26:31] 2026-02-05 20:24:04,769 | INFO     | process IDs to be killed: [3759005] (in reverse order)
[2026-02-05 21:26:31] 2026-02-05 20:24:05,029 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 21:26:31] 2026-02-05 20:24:05,030 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 21:26:31] 2026-02-05 20:24:05,064 | INFO     | did not find any defunct processes belonging to 3759005
[2026-02-05 21:26:31] 2026-02-05 20:24:05,095 | INFO     | did not find any defunct processes belonging to 3759005
[2026-02-05 21:26:31] 2026-02-05 20:24:05,095 | INFO     | ready for new job
[2026-02-05 21:26:31] 2026-02-05 20:24:05,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 21:26:31] 2026-02-05 20:24:05,098 | INFO     | **************************************
[2026-02-05 21:26:31] 2026-02-05 20:24:05,098 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 21:26:31] 2026-02-05 20:24:05,098 | INFO     | **************************************
[2026-02-05 21:26:31] 2026-02-05 20:24:05,098 | INFO     | 
[2026-02-05 21:26:31] 2026-02-05 20:24:05,107 | INFO     | architecture information:
[2026-02-05 21:26:31] 2026-02-05 20:24:05,107 | INFO     | executing command: cat /etc/os-release
[2026-02-05 21:26:31] 2026-02-05 20:24:05,132 | INFO     | cat /etc/os-release:
[2026-02-05 21:26:31] NAME="CentOS Linux"
[2026-02-05 21:26:31] VERSION="7 (Core)"
[2026-02-05 21:26:31] ID="centos"
[2026-02-05 21:26:31] ID_LIKE="rhel fedora"
[2026-02-05 21:26:31] VERSION_ID="7"
[2026-02-05 21:26:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 21:26:31] ANSI_COLOR="0;31"
[2026-02-05 21:26:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 21:26:31] HOME_URL="https://www.centos.org/"
[2026-02-05 21:26:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 21:26:31] 
[2026-02-05 21:26:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 21:26:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 21:26:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 21:26:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 21:26:31] 
[2026-02-05 21:26:31] 2026-02-05 20:24:05,132 | INFO     | **************************************
[2026-02-05 21:26:31] 2026-02-05 20:24:05,635 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2026-02-05 21:26:31] 2026-02-05 20:24:05,656 | INFO     | sufficient remaining disk space (3223220912128 B)
[2026-02-05 21:26:31] 2026-02-05 20:24:05,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 21:26:31] 2026-02-05 20:24:05,657 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 21:26:31] 2026-02-05 20:24:05,657 | INFO     | update_server=False
[2026-02-05 21:26:31] 2026-02-05 20:24:05,657 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 21:26:31] 2026-02-05 20:24:06,085 | INFO     | all payload control threads have been joined
[2026-02-05 21:26:31] 2026-02-05 20:24:06,164 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 21:26:31] 2026-02-05 20:24:06,165 | INFO     | aborting loop
[2026-02-05 21:26:31] 2026-02-05 20:24:06,195 | INFO     | all data control threads have been joined
[2026-02-05 21:26:31] 2026-02-05 20:24:06,327 | INFO     | all job control threads have been joined
[2026-02-05 21:26:31] 2026-02-05 20:24:06,663 | INFO     | [job] retrieve thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:06,711 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:06,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 21:26:31] 2026-02-05 20:24:06,802 | INFO     | [data] copytool_in thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:06,885 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:07,090 | INFO     | [payload] control thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:07,166 | INFO     | [job] job monitor thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:07,201 | INFO     | [data] control thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:07,333 | INFO     | [job] control thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:07,406 | INFO     | [payload] failed_post thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:07,566 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:07,567 | INFO     | [job] validate thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:07,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 21:26:31] 2026-02-05 20:24:07,955 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 21:26:31] 2026-02-05 20:24:08,004 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:08,097 | INFO     | [payload] validate_post thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:08,734 | INFO     | [data] copytool_out thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:08,928 | INFO     | [job] queue monitor thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:11,960 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 21:26:31] 2026-02-05 20:24:34,445 | INFO     | 10644s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-05 21:26:31] 2026-02-05 20:24:36,398 | INFO     | PID=3747992 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-05 21:26:31] 2026-02-05 20:24:36,398 | INFO     | .. there are 9 such processes running
[2026-02-05 21:26:31] 2026-02-05 20:24:36,399 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 21:26:31] 2026-02-05 20:24:36,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 21:26:31] 2026-02-05 20:24:36,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 21:26:31] 2026-02-05 20:25:04,856 | INFO     | [monitor] cgroup control has ended
[2026-02-05 21:26:31] 2026-02-05 20:25:05,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22760684009280)>', '<ExcThread(monitor, started 22760446506752)>']
[2026-02-05 21:26:31] 2026-02-05 20:25:05,528 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 21:26:31] 2026-02-05 20:25:05,529 | INFO     | [monitor] control thread has ended
[2026-02-05 21:26:31] 2026-02-05 20:25:10,332 | INFO     | all workflow threads have been joined
[2026-02-05 21:26:31] 2026-02-05 20:25:10,332 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 21:26:31] 2026-02-05 20:25:10,333 | INFO     | traces error code: 0
[2026-02-05 21:26:31] 2026-02-05 20:25:10,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 21:26:31] 2026-02-05 20:25:10,494 [wrapper] ==== pilot stdout END ====
[2026-02-05 21:26:31] 2026-02-05 20:25:10,498 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 21:26:31] 2026-02-05 20:25:10,503 [wrapper] pilotpid: 3747992
[2026-02-05 21:26:31] 2026-02-05 20:25:10,506 [wrapper] Pilot exit status: 0
[2026-02-05 21:26:31] 2026-02-05 20:25:10,521 [wrapper] pandaids: 6995419165
[2026-02-05 21:26:31] 2026-02-05 20:25:10,701 [wrapper] cleanup supervisor_pilot 4054201 3747993
[2026-02-05 21:26:31] 2026-02-05 20:25:10,706 [wrapper] Test setup, not cleaning
[2026-02-05 21:26:31] 2026-02-05 20:25:10,713 [wrapper] apfmon messages muted
[2026-02-05 21:26:31] 2026-02-05 20:25:10,717 [wrapper] ==== wrapper stdout END ====
[2026-02-05 21:26:31] 2026-02-05 20:25:10,721 [wrapper] ==== wrapper stderr END ====
[2026-02-05 21:26:31]  *** Error codes and diagnostics ***
[2026-02-05 21:26:31]     "exeErrorCode": 0,
[2026-02-05 21:26:31]     "exeErrorDiag": "",
[2026-02-05 21:26:31]     "pilotErrorCode": 0,
[2026-02-05 21:26:31]     "pilotErrorDiag": "",
[2026-02-05 21:26:31]  *** Listing of results directory ***
[2026-02-05 21:26:31] total 671956
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc    584422 Feb  1 05:35 pilot3.tar.gz
[2026-02-05 21:26:31] -rwx------ 1 boinc boinc     36322 Feb  1 05:39 runpilot2-wrapper.sh
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc      5111 Feb  1 05:43 queuedata.json
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc       100 Feb  5 18:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 21:26:31] -rwxr-xr-x 1 boinc boinc      7986 Feb  5 18:26 run_atlas
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc       105 Feb  5 18:26 job.xml
[2026-02-05 21:26:31] -rw-r--r-- 2 boinc boinc 493143019 Feb  5 18:26 EVNT.48317889._000120.pool.root.1
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc      6693 Feb  5 18:26 init_data.xml
[2026-02-05 21:26:31] -rw-r--r-- 2 boinc boinc     15845 Feb  5 18:26 start_atlas.sh
[2026-02-05 21:26:31] drwxrwx--x 2 boinc boinc      4096 Feb  5 18:26 shared
[2026-02-05 21:26:31] -rw-r--r-- 2 boinc boinc    597760 Feb  5 18:26 input.tar.gz
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc         0 Feb  5 18:26 boinc_lockfile
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc      2520 Feb  5 18:26 pandaJob.out
[2026-02-05 21:26:31] -rw------- 1 boinc boinc   1009510 Feb  5 18:26 agis_schedconf.cvmfs.json
[2026-02-05 21:26:31] -rw------- 1 boinc boinc   1513144 Feb  5 18:26 agis_ddmendpoints.agis.ALL.json
[2026-02-05 21:26:31] -rw------- 1 boinc boinc       444 Feb  5 18:26 workernode_map.json
[2026-02-05 21:26:31] drwx------ 5 boinc boinc      4096 Feb  5 18:26 pilot3
[2026-02-05 21:26:31] -rw------- 1 boinc boinc 187306577 Feb  5 21:23 HITS.48317892._006157.pool.root.1
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc       529 Feb  5 21:23 boinc_task_state.xml
[2026-02-05 21:26:31] -rw------- 1 boinc boinc        95 Feb  5 21:23 pilot_heartbeat.json
[2026-02-05 21:26:31] -rw------- 1 boinc boinc      1028 Feb  5 21:23 memory_monitor_summary.json
[2026-02-05 21:26:31] -rw------- 1 boinc boinc    361307 Feb  5 21:24 log.48317892._006157.job.log.tgz.1
[2026-02-05 21:26:31] -rw------- 1 boinc boinc      6358 Feb  5 21:24 heartbeat.json
[2026-02-05 21:26:31] -rw------- 1 boinc boinc      4948 Feb  5 21:25 pilotlog.txt
[2026-02-05 21:26:31] -rw------- 1 boinc boinc   1482520 Feb  5 21:25 log.48317892._006157.job.log.1
[2026-02-05 21:26:31] -rw------- 1 boinc boinc       357 Feb  5 21:25 output.list
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc       620 Feb  5 21:25 runtime_log
[2026-02-05 21:26:31] -rw------- 1 boinc boinc   1863680 Feb  5 21:25 result.tar.gz
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc      9222 Feb  5 21:25 runtime_log.err
[2026-02-05 21:26:31] -rw------- 1 boinc boinc       665 Feb  5 21:25 pWUMDmxPe68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm1cPKDmlUPgAn.diag
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc        26 Feb  5 21:26 wrapper_checkpoint.txt
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc      8192 Feb  5 21:26 boinc_mmap_file
[2026-02-05 21:26:31] -rw-r--r-- 1 boinc boinc     21158 Feb  5 21:26 stderr.txt
[2026-02-05 21:26:31] HITS file was successfully produced:
[2026-02-05 21:26:31] -rw------- 1 boinc boinc 187306577 Feb  5 21:23 shared/HITS.pool.root.1
[2026-02-05 21:26:31]  *** Contents of shared directory: ***
[2026-02-05 21:26:31] total 666936
[2026-02-05 21:26:31] -rw-r--r-- 2 boinc boinc 493143019 Feb  5 18:26 ATLAS.root_0
[2026-02-05 21:26:31] -rw-r--r-- 2 boinc boinc     15845 Feb  5 18:26 start_atlas.sh
[2026-02-05 21:26:31] -rw-r--r-- 2 boinc boinc    597760 Feb  5 18:26 input.tar.gz
[2026-02-05 21:26:31] -rw------- 1 boinc boinc 187306577 Feb  5 21:23 HITS.pool.root.1
[2026-02-05 21:26:31] -rw------- 1 boinc boinc   1863680 Feb  5 21:25 result.tar.gz
21:26:32 (3739634): run_atlas exited; CPU time 41280.092705
21:26:32 (3739634): called boinc_finish(0)

</stderr_txt>
]]>

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