Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:54:23 (42888): wrapper (7.7.26015): starting
02:54:23 (42888): wrapper: running run_atlas (--nthreads 6)
[2026-02-05 02:54:23] Arguments: --nthreads 6
[2026-02-05 02:54:23] Threads: 6
[2026-02-05 02:54:23] Checking for CVMFS
[2026-02-05 02:54:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-05 02:54:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-05 02:54:36] Running cvmfs_config stat atlas.cern.ch
[2026-02-05 02:54:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-05 02:54:37] 2.13.3.0 43108 0 29604 155873 3 1 41787299 52428800 0 130560 0 0 0.000 1336 211 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-05 02:54:37] CVMFS is ok
[2026-02-05 02:54:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-05 02:54:37] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-05 02:54:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-05 02:54:37] Further information can be found at the LHC@home message board.
[2026-02-05 02:54:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-05 02:54:37] Checking for apptainer binary...
[2026-02-05 02:54:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-05 02:54:37] Running /usr/bin/apptainer --version
[2026-02-05 02:54:37] apptainer version 1.4.5-2.el9
[2026-02-05 02:54:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-05 02:54:37] Atto003
[2026-02-05 02:54:37] apptainer works
[2026-02-05 02:54:37] Set ATHENA_PROC_NUMBER=6
[2026-02-05 02:54:37] Set ATHENA_CORE_NUMBER=6
[2026-02-05 02:54:37] Starting ATLAS job with PandaID=7000016857
[2026-02-05 02:54:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-05 04:46:43]  *** The last 200 lines of the pilot log: ***
[2026-02-05 04:46:43] 2026-02-04 19:45:39,048 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/1/workernode_map.json
[2026-02-05 04:46:43] 2026-02-04 19:45:39,048 | INFO     | this job has now completed (state=finished)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,048 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,048 | INFO     | log transfer has been attempted: DONE
[2026-02-05 04:46:43] 2026-02-04 19:45:39,048 | INFO     | job 7000016857 has finished - writing final server update
[2026-02-05 04:46:43] 2026-02-04 19:45:39,048 | INFO     | total number of processed events: 400 (read)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,051 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-7000016857/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,051 | INFO     | extracted standard info from prmon json
[2026-02-05 04:46:43] 2026-02-04 19:45:39,051 | INFO     | extracted standard memory fields from prmon json
[2026-02-05 04:46:43] 2026-02-04 19:45:39,051 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-05 04:46:43] 2026-02-04 19:45:39,052 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-05 04:46:43] 2026-02-04 19:45:39,052 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-05 04:46:43] 2026-02-04 19:45:39,053 | INFO     | fitting pss+swap vs Time
[2026-02-05 04:46:43] 2026-02-04 19:45:39,053 | INFO     | sum of square deviations: 390586236.96296275
[2026-02-05 04:46:43] 2026-02-04 19:45:39,054 | INFO     | sum of deviations: 2299791940.4814816
[2026-02-05 04:46:43] 2026-02-04 19:45:39,054 | INFO     | mean x: 1770231013.5185184
[2026-02-05 04:46:43] 2026-02-04 19:45:39,054 | INFO     | mean y: 2490730.7592592593
[2026-02-05 04:46:43] 2026-02-04 19:45:39,054 | INFO     | intersect: -10420720924.9712
[2026-02-05 04:46:43] 2026-02-04 19:45:39,054 | INFO     | chi2: 1.7660479008488459
[2026-02-05 04:46:43] 2026-02-04 19:45:39,054 | INFO     | sum of square deviations: 338809131.9611645
[2026-02-05 04:46:43] 2026-02-04 19:45:39,055 | INFO     | sum of deviations: 2383699934.4563093
[2026-02-05 04:46:43] 2026-02-04 19:45:39,055 | INFO     | mean x: 1770230861.0194175
[2026-02-05 04:46:43] 2026-02-04 19:45:39,055 | INFO     | mean y: 2490978.2718446604
[2026-02-05 04:46:43] 2026-02-04 19:45:39,055 | INFO     | intersect: -12452011540.474312
[2026-02-05 04:46:43] 2026-02-04 19:45:39,055 | INFO     | chi2: 1.7686663253990507
[2026-02-05 04:46:43] 2026-02-04 19:45:39,055 | INFO     | current chi2=1.7686663253990507 (change=-0.14826463930826791 %)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,055 | INFO     | right removable region: 102
[2026-02-05 04:46:43] 2026-02-04 19:45:39,055 | INFO     | sum of square deviations: 338807911.9611645
[2026-02-05 04:46:43] 2026-02-04 19:45:39,056 | INFO     | sum of deviations: -13997389566.349527
[2026-02-05 04:46:43] 2026-02-04 19:45:39,056 | INFO     | mean x: 1770231166.0194175
[2026-02-05 04:46:43] 2026-02-04 19:45:39,056 | INFO     | mean y: 2537638.174757282
[2026-02-05 04:46:43] 2026-02-04 19:45:39,056 | INFO     | intersect: 73137238388.92694
[2026-02-05 04:46:43] 2026-02-04 19:45:39,056 | INFO     | chi2: 0.16850944184481864
[2026-02-05 04:46:43] 2026-02-04 19:45:39,056 | INFO     | current chi2=0.16850944184481864 (change=90.45838780681855 %)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,056 | INFO     | sum of square deviations: 291820374.4591833
[2026-02-05 04:46:43] 2026-02-04 19:45:39,057 | INFO     | sum of deviations: -9298836930.000006
[2026-02-05 04:46:43] 2026-02-04 19:45:39,057 | INFO     | mean x: 1770231318.5204082
[2026-02-05 04:46:43] 2026-02-04 19:45:39,057 | INFO     | mean y: 2522356.0
[2026-02-05 04:46:43] 2026-02-04 19:45:39,057 | INFO     | intersect: 56410826230.624
[2026-02-05 04:46:43] 2026-02-04 19:45:39,057 | INFO     | chi2: 0.1431728907345231
[2026-02-05 04:46:43] 2026-02-04 19:45:39,057 | INFO     | current chi2=0.1431728907345231 (change=15.035686328857537 %)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,057 | INFO     | left removable region: 20
[2026-02-05 04:46:43] 2026-02-04 19:45:39,057 | INFO     | sum of square deviations: 170946922.4512196
[2026-02-05 04:46:43] 2026-02-04 19:45:39,058 | INFO     | sum of deviations: 178360168.62195125
[2026-02-05 04:46:43] 2026-02-04 19:45:39,058 | INFO     | mean x: 1770231440.5243902
[2026-02-05 04:46:43] 2026-02-04 19:45:39,058 | INFO     | mean y: 2486842.93902439
[2026-02-05 04:46:43] 2026-02-04 19:45:39,058 | INFO     | intersect: -1844512060.0210874
[2026-02-05 04:46:43] 2026-02-04 19:45:39,058 | INFO     | chi2: 0.0012313157694010652
[2026-02-05 04:46:43] 2026-02-04 19:45:39,058 | INFO     | current memory leak: 1.04 B/s (using 82 data points, chi2=0.00)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,058 | INFO     | could have reported an average CPU frequency of 3599 MHz (7 samples)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,058 | INFO     | ..............................
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | . Timing measurements:
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | . get job = 0 s
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | . initial setup = 16 s
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | . payload setup = 7 s
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | . stage-in = 0 s
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | . payload execution = 6586 s
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | . stage-out = 0 s
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | . log creation = 0 s
[2026-02-05 04:46:43] 2026-02-04 19:45:39,059 | INFO     | ..............................
[2026-02-05 04:46:43] 2026-02-04 19:45:39,097 | INFO     | 
[2026-02-05 04:46:43] 2026-02-04 19:45:39,097 | INFO     | job summary report
[2026-02-05 04:46:43] 2026-02-04 19:45:39,097 | INFO     | --------------------------------------------------
[2026-02-05 04:46:43] 2026-02-04 19:45:39,097 | INFO     | PanDA job id: 7000016857
[2026-02-05 04:46:43] 2026-02-04 19:45:39,097 | INFO     | task id: 48317892
[2026-02-05 04:46:43] 2026-02-04 19:45:39,097 | INFO     | errors: (none)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,097 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | pilot state: finished 
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | transexitcode: 0
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | exeerrorcode: 0
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | exeerrordiag: 
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | exitcode: 0
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | exitmsg: OK
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | cpuconsumptiontime: 37103 s
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | nevents: 400
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | neventsw: 0
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | pid: 51890
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | pgrp: 51890
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | corecount: 6
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | event service: False
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | sizes: {0: 2278017, 1: 2278223, 11: 2278251, 6597: 2305446, 6598: 2314499, 6601: 2314821}
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | --------------------------------------------------
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | 
[2026-02-05 04:46:43] 2026-02-04 19:45:39,098 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-02-05 04:46:43] 2026-02-04 19:45:39,110 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,110 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,110 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,111 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,112 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,112 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-05 04:46:43] 2026-02-04 19:45:39,112 | INFO     | job 7000016857 has completed (purged errors)
[2026-02-05 04:46:43] 2026-02-04 19:45:39,112 | INFO     | overall cleanup function is called
[2026-02-05 04:46:43] 2026-02-04 19:45:40,102 | WARNING  | process 51890 can no longer be monitored (due to stat problems) - aborting
[2026-02-05 04:46:43] 2026-02-04 19:45:40,118 | INFO     | --- collectZombieJob: --- 10, [51890]
[2026-02-05 04:46:43] 2026-02-04 19:45:40,118 | INFO     | zombie collector waiting for pid 51890
[2026-02-05 04:46:43] 2026-02-04 19:45:40,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-05 04:46:43] 2026-02-04 19:45:40,118 | INFO     | collected zombie processes
[2026-02-05 04:46:43] 2026-02-04 19:45:40,118 | INFO     | will attempt to kill all subprocesses of pid=51890
[2026-02-05 04:46:43] 2026-02-04 19:45:40,201 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-05 04:46:43] 2026-02-04 19:45:40,258 | INFO     | process IDs to be killed: [51890] (in reverse order)
[2026-02-05 04:46:43] 2026-02-04 19:45:40,285 | WARNING  | found no corresponding commands to process id(s)
[2026-02-05 04:46:43] 2026-02-04 19:45:40,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-05 04:46:43] 2026-02-04 19:45:40,288 | INFO     | did not find any defunct processes belonging to 51890
[2026-02-05 04:46:43] 2026-02-04 19:45:40,293 | INFO     | did not find any defunct processes belonging to 51890
[2026-02-05 04:46:43] 2026-02-04 19:45:40,293 | INFO     | ready for new job
[2026-02-05 04:46:43] 2026-02-04 19:45:40,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-05 04:46:43] 2026-02-04 19:45:40,294 | INFO     | **************************************
[2026-02-05 04:46:43] 2026-02-04 19:45:40,294 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-05 04:46:43] 2026-02-04 19:45:40,294 | INFO     | **************************************
[2026-02-05 04:46:43] 2026-02-04 19:45:40,294 | INFO     | 
[2026-02-05 04:46:43] 2026-02-04 19:45:40,295 | INFO     | architecture information:
[2026-02-05 04:46:43] 2026-02-04 19:45:40,296 | INFO     | executing command: cat /etc/os-release
[2026-02-05 04:46:43] 2026-02-04 19:45:40,306 | INFO     | cat /etc/os-release:
[2026-02-05 04:46:43] NAME="CentOS Linux"
[2026-02-05 04:46:43] VERSION="7 (Core)"
[2026-02-05 04:46:43] ID="centos"
[2026-02-05 04:46:43] ID_LIKE="rhel fedora"
[2026-02-05 04:46:43] VERSION_ID="7"
[2026-02-05 04:46:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-05 04:46:43] ANSI_COLOR="0;31"
[2026-02-05 04:46:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-05 04:46:43] HOME_URL="https://www.centos.org/"
[2026-02-05 04:46:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-05 04:46:43] 
[2026-02-05 04:46:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-05 04:46:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-05 04:46:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-05 04:46:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-05 04:46:43] 
[2026-02-05 04:46:43] 2026-02-04 19:45:40,306 | INFO     | **************************************
[2026-02-05 04:46:43] 2026-02-04 19:45:40,309 | INFO     | number of running child processes to parent process 51890: 1
[2026-02-05 04:46:43] 2026-02-04 19:45:40,309 | INFO     | maximum number of monitored processes: 6
[2026-02-05 04:46:43] 2026-02-04 19:45:40,309 | INFO     | aborting job monitoring since job object (job id=7000016857) has expired
[2026-02-05 04:46:43] 2026-02-04 19:45:40,809 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-02-05 04:46:43] 2026-02-04 19:45:40,816 | INFO     | sufficient remaining disk space (115347554304 B)
[2026-02-05 04:46:43] 2026-02-04 19:45:40,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-05 04:46:43] 2026-02-04 19:45:40,817 | INFO     | current server update state: UPDATING_FINAL
[2026-02-05 04:46:43] 2026-02-04 19:45:40,817 | INFO     | update_server=False
[2026-02-05 04:46:43] 2026-02-04 19:45:40,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-05 04:46:43] 2026-02-04 19:45:40,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-05 04:46:43] 2026-02-04 19:45:40,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-05 04:46:43] 2026-02-04 19:45:40,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-05 04:46:43] 2026-02-04 19:45:40,817 | INFO     | will abort loop
[2026-02-05 04:46:43] 2026-02-04 19:45:41,454 | INFO     | all data control threads have been joined
[2026-02-05 04:46:43] 2026-02-04 19:45:41,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-05 04:46:43] 2026-02-04 19:45:41,597 | INFO     | all job control threads have been joined
[2026-02-05 04:46:43] 2026-02-04 19:45:41,655 | INFO     | all payload control threads have been joined
[2026-02-05 04:46:43] 2026-02-04 19:45:41,822 | INFO     | [job] retrieve thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:41,822 | INFO     | [job] job monitor thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:41,822 | INFO     | [job] queue monitor thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:42,159 | INFO     | [payload] failed_post thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:42,163 | INFO     | [payload] execute_payloads thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:42,459 | INFO     | [data] control thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:42,602 | INFO     | [job] control thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:42,649 | INFO     | [job] validate thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:42,660 | INFO     | [payload] control thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:42,754 | INFO     | [payload] validate_post thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:43,051 | INFO     | [data] copytool_in thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:43,224 | INFO     | [payload] validate_pre thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:43,231 | INFO     | [job] create_data_payload thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:43,472 | INFO     | [data] copytool_out thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:44,822 | INFO     | [data] queue_monitor thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:45:51,035 | INFO     | job.realtimelogging is not enabled
[2026-02-05 04:46:43] 2026-02-04 19:45:52,040 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-05 04:46:43] 2026-02-04 19:46:11,589 | INFO     | PID=47253 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-05 04:46:43] 2026-02-04 19:46:11,590 | INFO     | found 0 job(s) in 20 queues
[2026-02-05 04:46:43] 2026-02-04 19:46:11,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-05 04:46:43] 2026-02-04 19:46:11,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-05 04:46:43] 2026-02-04 19:46:37,099 | INFO     | [monitor] cgroup control has ended
[2026-02-05 04:46:43] 2026-02-04 19:46:38,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140196377761600)>', '<ExcThread(monitor, started 140196020467456)>']
[2026-02-05 04:46:43] 2026-02-04 19:46:38,725 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-05 04:46:43] 2026-02-04 19:46:38,725 | INFO     | [monitor] control thread has ended
[2026-02-05 04:46:43] 2026-02-04 19:46:43,675 | INFO     | all workflow threads have been joined
[2026-02-05 04:46:43] 2026-02-04 19:46:43,675 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-05 04:46:43] 2026-02-04 19:46:43,675 | INFO     | traces error code: 0
[2026-02-05 04:46:43] 2026-02-04 19:46:43,675 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-05 04:46:43] 2026-02-04 19:46:43,748 [wrapper] ==== pilot stdout END ====
[2026-02-05 04:46:43] 2026-02-04 19:46:43,749 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-05 04:46:43] 2026-02-04 19:46:43,750 [wrapper] pilotpid: 47253
[2026-02-05 04:46:43] 2026-02-04 19:46:43,751 [wrapper] Pilot exit status: 0
[2026-02-05 04:46:43] 2026-02-04 19:46:43,756 [wrapper] pandaids: 7000016857
[2026-02-05 04:46:43] 2026-02-04 19:46:43,776 [wrapper] cleanup supervisor_pilot   56943 47254
[2026-02-05 04:46:43] 2026-02-04 19:46:43,778 [wrapper] Test setup, not cleaning
[2026-02-05 04:46:43] 2026-02-04 19:46:43,779 [wrapper] apfmon messages muted
[2026-02-05 04:46:43] 2026-02-04 19:46:43,781 [wrapper] ==== wrapper stdout END ====
[2026-02-05 04:46:43] 2026-02-04 19:46:43,782 [wrapper] ==== wrapper stderr END ====
[2026-02-05 04:46:43]  *** Error codes and diagnostics ***
[2026-02-05 04:46:43]     "exeErrorCode": 0,
[2026-02-05 04:46:43]     "exeErrorDiag": "",
[2026-02-05 04:46:43]     "pilotErrorCode": 0,
[2026-02-05 04:46:43]     "pilotErrorDiag": "",
[2026-02-05 04:46:43]  *** Listing of results directory ***
[2026-02-05 04:46:43] total 678960
[2026-02-05 04:46:43] -rwx------. 1 boinc boinc     36322 Feb  4 02:16 runpilot2-wrapper.sh
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc    584422 Feb  4 02:17 pilot3.tar.gz
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc      5111 Feb  4 02:18 queuedata.json
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc       100 Feb  5 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-05 04:46:43] -rwxr-xr-x. 1 boinc boinc      7986 Feb  5 02:54 run_atlas
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc       105 Feb  5 02:54 job.xml
[2026-02-05 04:46:43] -rw-r--r--. 2 boinc boinc 499385661 Feb  5 02:54 EVNT.48317889._000236.pool.root.1
[2026-02-05 04:46:43] -rw-r--r--. 2 boinc boinc    597757 Feb  5 02:54 input.tar.gz
[2026-02-05 04:46:43] -rw-r--r--. 2 boinc boinc     15845 Feb  5 02:54 start_atlas.sh
[2026-02-05 04:46:43] drwxrwx--x. 2 boinc boinc        68 Feb  5 02:54 shared
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc         0 Feb  5 02:54 boinc_lockfile
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc      2522 Feb  5 02:54 pandaJob.out
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc   1009544 Feb  5 02:55 agis_schedconf.cvmfs.json
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc   1511668 Feb  5 02:55 agis_ddmendpoints.agis.ALL.json
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc       426 Feb  5 02:55 workernode_map.json
[2026-02-05 04:46:43] drwx------. 5 boinc boinc      4096 Feb  5 02:55 pilot3
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc      6566 Feb  5 03:34 init_data.xml
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc 189375654 Feb  5 04:45 HITS.48317892._012395.pool.root.1
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc       530 Feb  5 04:45 boinc_task_state.xml
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc      1012 Feb  5 04:45 memory_monitor_summary.json
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc    335483 Feb  5 04:45 log.48317892._012395.job.log.tgz.1
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc      6309 Feb  5 04:45 heartbeat.json
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc        95 Feb  5 04:46 pilot_heartbeat.json
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc        27 Feb  5 04:46 wrapper_checkpoint.txt
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc      8192 Feb  5 04:46 boinc_mmap_file
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc      5103 Feb  5 04:46 pilotlog.txt
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc    948213 Feb  5 04:46 log.48317892._012395.job.log.1
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc       357 Feb  5 04:46 output.list
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc       620 Feb  5 04:46 runtime_log
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc   1300480 Feb  5 04:46 result.tar.gz
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc      8764 Feb  5 04:46 runtime_log.err
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc       640 Feb  5 04:46 iQSLDm4BZ78n9Rq4apOajLDm4fhM0noT9bVooX4SDm28UKDmvDP4Mm.diag
[2026-02-05 04:46:43] -rw-r--r--. 1 boinc boinc     21335 Feb  5 04:46 stderr.txt
[2026-02-05 04:46:43] HITS file was successfully produced:
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc 189375654 Feb  5 04:45 shared/HITS.pool.root.1
[2026-02-05 04:46:43]  *** Contents of shared directory: ***
[2026-02-05 04:46:43] total 674496
[2026-02-05 04:46:43] -rw-r--r--. 2 boinc boinc 499385661 Feb  5 02:54 ATLAS.root_0
[2026-02-05 04:46:43] -rw-r--r--. 2 boinc boinc    597757 Feb  5 02:54 input.tar.gz
[2026-02-05 04:46:43] -rw-r--r--. 2 boinc boinc     15845 Feb  5 02:54 start_atlas.sh
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc 189375654 Feb  5 04:45 HITS.pool.root.1
[2026-02-05 04:46:43] -rw-------. 1 boinc boinc   1300480 Feb  5 04:46 result.tar.gz
04:46:45 (42888): run_atlas exited; CPU time 37184.744787
04:46:45 (42888): called boinc_finish(0)

</stderr_txt>
]]>

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